Wall clock time and date at job start Sat Apr 11 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.00195 * 2 1 4 4 C 1.54320 * 109.88346 * 121.10036 * 2 1 3 5 5 C 1.55166 * 102.94092 * 141.60786 * 4 2 1 6 6 H 1.08996 * 111.03522 * 82.58535 * 5 4 2 7 7 N 1.46900 * 111.00244 * 206.42260 * 5 4 2 8 8 C 1.46900 * 110.99904 * 198.65030 * 7 5 4 9 9 C 1.50697 * 109.47148 * 179.97438 * 8 7 5 10 10 N 1.30890 * 125.91503 * 274.98110 * 9 8 7 11 11 C 1.33539 * 109.78191 * 180.02562 * 10 9 8 12 12 O 1.35865 * 125.58642 * 180.02562 * 11 10 9 13 13 N 1.31071 * 108.82596 * 0.25685 * 11 10 9 14 14 N 1.34359 * 125.90951 * 95.01362 * 9 8 7 15 15 H 0.96996 * 126.77526 * 359.97267 * 14 9 8 16 16 C 1.54910 * 101.58184 * 324.49760 * 5 4 2 17 17 N 1.47024 * 109.87961 * 238.90889 * 2 1 3 18 18 C 1.34777 * 125.65270 * 61.67782 * 17 2 1 19 19 O 1.21288 * 119.99286 * 359.97438 * 18 17 2 20 20 C 1.50699 * 120.00500 * 179.97438 * 18 17 2 21 21 S 1.81002 * 109.47273 * 179.97438 * 20 18 17 22 22 C 1.76198 * 100.00066 * 179.97438 * 21 20 18 23 23 H 1.08003 * 119.99648 * 0.02562 * 22 21 20 24 24 C 1.38791 * 120.00010 * 179.97438 * 22 21 20 25 25 N 1.31633 * 120.00239 * 0.02562 * 24 22 21 26 26 Si 1.86809 * 119.99942 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.46960 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.46854 * 120.00395 * 26 24 22 29 29 H 1.48498 * 109.46972 * 240.00114 * 26 24 22 30 30 H 1.08997 * 109.47472 * 179.63810 * 1 2 3 31 31 H 1.09001 * 109.46864 * 299.63761 * 1 2 3 32 32 H 1.09006 * 109.47404 * 59.63858 * 1 2 3 33 33 H 1.09000 * 110.72108 * 23.24706 * 4 2 1 34 34 H 1.08998 * 110.71766 * 259.97038 * 4 2 1 35 35 H 1.00900 * 110.99821 * 74.69508 * 7 5 4 36 36 H 1.08997 * 109.47217 * 60.00053 * 8 7 5 37 37 H 1.09000 * 109.47002 * 300.00234 * 8 7 5 38 38 H 0.96700 * 114.00317 * 89.99725 * 12 11 10 39 39 H 1.08999 * 110.36805 * 155.84714 * 16 5 4 40 40 H 1.09003 * 110.36666 * 278.06307 * 16 5 4 41 41 H 1.08993 * 109.47109 * 300.00102 * 20 18 17 42 42 H 1.09001 * 109.46774 * 60.00133 * 20 18 17 43 43 H 0.96996 * 120.00230 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 1.2426 5 6 3.2876 -1.5143 0.6921 6 1 4.1658 -0.8695 0.6601 7 7 3.5539 -2.7230 1.4835 8 6 4.9266 -3.2004 1.2696 9 6 5.1625 -4.4382 2.0962 10 7 5.5301 -4.4642 3.3521 11 6 5.6448 -5.7295 3.7633 12 8 6.0078 -6.1255 5.0113 13 7 5.3545 -6.5269 2.7644 14 7 5.0324 -5.7061 1.6712 15 1 4.7712 -5.9972 0.7836 16 6 2.8144 -1.8794 -0.7370 17 7 2.0299 -0.7140 -1.1840 18 6 1.8084 -0.3612 -2.4658 19 8 1.1450 0.6224 -2.7179 20 6 2.3851 -1.1886 -3.5856 21 16 1.9144 -0.4633 -5.1758 22 6 2.6992 -1.5966 -6.2732 23 1 3.2598 -2.4308 -5.8778 24 6 2.5961 -1.4179 -7.6457 25 7 1.9125 -0.4015 -8.1276 26 14 3.4276 -2.6199 -8.8091 27 1 4.1273 -3.6669 -8.0222 28 1 2.4049 -3.2552 -9.6784 29 1 4.4111 -1.8932 -9.6517 30 1 -0.3634 -1.0276 -0.0065 31 1 -0.3633 0.5082 0.8932 32 1 -0.3634 0.5195 -0.8868 33 1 1.3051 -1.4461 1.6181 34 1 2.3529 -0.0461 2.0200 35 1 2.8827 -3.4469 1.2749 36 1 5.6317 -2.4247 1.5683 37 1 5.0696 -3.4347 0.2148 38 1 5.2651 -6.2364 5.6204 39 1 3.6715 -2.0338 -1.3926 40 1 2.1901 -2.7726 -0.7134 41 1 3.4716 -1.2068 -3.5015 42 1 1.9985 -2.2057 -3.5219 43 1 1.8407 -0.2764 -9.0868 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278348660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:29 Heat of formation + Delta-G solvation = -7.291085 kcal Electronic energy + Delta-G solvation = -26473.542198 eV Core-core repulsion = 22488.217296 eV Total energy + Delta-G solvation = -3985.324902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.28697 -41.26316 -39.03425 -38.47705 -36.40529 -34.58979 -33.39617 -33.33565 -32.61493 -30.47898 -30.07986 -27.67275 -26.90407 -26.57211 -23.64225 -23.23826 -22.22714 -21.82544 -20.35618 -19.64165 -19.47506 -18.68990 -18.19892 -17.56583 -17.07085 -16.90278 -16.88665 -16.35015 -16.01117 -15.77951 -15.27892 -14.98710 -14.96051 -14.58456 -14.28997 -14.27046 -13.96391 -13.86330 -13.51928 -13.25818 -13.15752 -13.07825 -13.01299 -12.92014 -12.76252 -12.56414 -12.35045 -11.89081 -11.71328 -11.63751 -11.23495 -11.16564 -11.02988 -10.88951 -10.72751 -10.26667 -9.73682 -9.49329 -8.67824 -8.35205 -6.13448 0.33671 1.24440 1.35230 1.41110 1.45293 1.54558 1.57057 1.60558 2.08072 2.26656 2.37686 2.99271 3.04035 3.28320 3.43152 3.52040 3.62324 3.82822 3.93658 4.04305 4.18077 4.25289 4.29472 4.35465 4.42097 4.46866 4.61581 4.67047 4.74995 4.78149 4.93302 4.98833 5.00447 5.08824 5.19171 5.32945 5.41308 5.52745 5.79579 6.03703 6.19301 6.24659 6.43381 6.51939 6.89588 7.06259 7.16744 8.74171 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.002385 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.668361 B =11739.131820 C =14046.484251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.128 3.872 3 H 0.066 0.934 4 C -0.100 4.100 5 C 0.093 3.907 6 H 0.112 0.888 7 N -0.662 5.662 8 C 0.134 3.866 9 C 0.315 3.685 10 N -0.559 5.559 11 C 0.392 3.608 12 O -0.452 6.452 13 N -0.336 5.336 14 N -0.453 5.453 15 H 0.461 0.539 16 C 0.061 3.939 17 N -0.610 5.610 18 C 0.545 3.455 19 O -0.563 6.563 20 C -0.119 4.119 21 S -0.154 6.154 22 C -0.542 4.542 23 H 0.084 0.916 24 C 0.012 3.988 25 N -0.912 5.912 26 Si 0.999 3.001 27 H -0.254 1.254 28 H -0.276 1.276 29 H -0.275 1.275 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.031 0.969 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.354 0.646 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.429 0.571 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 -10.180 25.052 27.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.025 3.975 3 H 0.084 0.916 4 C -0.139 4.139 5 C -0.017 4.017 6 H 0.130 0.870 7 N -0.295 5.295 8 C 0.003 3.997 9 C 0.036 3.964 10 N -0.298 5.298 11 C 0.073 3.927 12 O -0.255 6.255 13 N -0.179 5.179 14 N -0.177 5.177 15 H 0.311 0.689 16 C -0.063 4.063 17 N -0.345 5.345 18 C 0.333 3.667 19 O -0.441 6.441 20 C -0.270 4.270 21 S 0.073 5.927 22 C -0.690 4.690 23 H 0.102 0.898 24 C -0.193 4.193 25 N -0.548 5.548 26 Si 0.820 3.180 27 H -0.178 1.178 28 H -0.201 1.201 29 H -0.201 1.201 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.174 0.826 36 H 0.139 0.861 37 H 0.112 0.888 38 H 0.290 0.710 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.214 -8.805 25.332 27.321 hybrid contribution 0.170 -1.968 -1.949 2.775 sum 5.384 -10.774 23.384 26.303 Atomic orbital electron populations 1.22088 0.95190 1.02200 1.02192 1.21772 0.94581 0.96631 0.84509 0.91630 1.22658 0.97037 0.99423 0.94747 1.22683 0.99291 0.92028 0.87747 0.87017 1.60384 1.02691 1.08146 1.58246 1.20689 0.92827 0.89895 0.96275 1.24354 0.93472 0.88408 0.90138 1.70293 1.25012 1.22592 1.11919 1.21405 0.96699 0.86107 0.88510 1.84858 1.36887 1.87818 1.15932 1.78168 1.26121 1.17177 0.96435 1.47755 1.52401 1.04086 1.13476 0.68922 1.23447 0.96018 0.88710 0.98161 1.48390 1.52988 1.29332 1.03772 1.19767 0.79642 0.84379 0.82870 1.90691 1.40877 1.28986 1.83568 1.23305 1.04683 1.02754 0.96250 1.85664 1.70836 1.40174 0.96027 1.23202 1.38077 1.14123 0.93558 0.89783 1.26136 0.95794 0.97922 0.99414 1.70192 1.40205 1.30342 1.14093 0.84907 0.77851 0.77755 0.77446 1.17768 1.20116 1.20065 0.92163 0.89510 0.94969 0.88979 0.87935 0.82628 0.86117 0.88813 0.71033 0.89361 0.89746 0.87421 0.87722 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.10 71.98 0.66 -2.76 16 2 C 0.13 2.50 3.46 45.34 0.16 2.66 16 3 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.10 -1.05 6.18 31.78 0.20 -0.86 16 5 C 0.09 0.78 3.32 46.31 0.15 0.94 16 6 H 0.11 0.87 7.92 -2.39 -0.02 0.85 16 7 N -0.66 -4.14 6.36 -488.40 -3.11 -7.25 16 8 C 0.13 0.75 6.18 85.56 0.53 1.28 16 9 C 0.32 3.71 7.74 138.23 1.07 4.78 16 10 N -0.56 -10.42 11.21 -304.31 -3.41 -13.83 16 11 C 0.39 7.52 9.46 180.57 1.71 9.23 16 12 O -0.45 -7.10 13.66 -92.03 -1.26 -8.36 16 13 N -0.34 -6.13 12.81 -174.94 -2.24 -8.37 16 14 N -0.45 -4.90 7.44 -50.72 -0.38 -5.28 16 15 H 0.46 1.74 8.96 -213.10 -1.91 -0.17 16 16 C 0.06 0.79 6.27 86.86 0.54 1.33 16 17 N -0.61 -14.40 3.06 -788.05 -2.41 -16.82 16 18 C 0.55 19.54 7.66 87.66 0.67 20.21 16 19 O -0.56 -25.75 14.90 -3.05 -0.05 -25.80 16 20 C -0.12 -4.49 5.16 71.24 0.37 -4.12 16 21 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 22 C -0.54 -29.99 9.50 67.95 0.65 -29.34 16 23 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 24 C 0.01 0.67 5.49 84.85 0.47 1.13 16 25 N -0.91 -55.22 13.22 21.65 0.29 -54.94 16 26 Si 1.00 42.40 29.55 68.60 2.03 44.42 16 27 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 28 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 29 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.03 0.96 6.88 -2.38 -0.02 0.95 16 33 H 0.09 0.85 7.85 -2.39 -0.02 0.83 16 34 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.35 1.60 8.30 -89.69 -0.74 0.86 16 36 H 0.12 0.71 8.09 -2.39 -0.02 0.69 16 37 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.43 2.03 9.06 -74.06 -0.67 1.36 16 39 H 0.09 1.03 7.47 -2.39 -0.02 1.01 16 40 H 0.08 0.87 7.80 -2.39 -0.02 0.85 16 41 H 0.11 3.60 7.85 -2.40 -0.02 3.58 16 42 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -87.21 378.80 -6.78 -93.99 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -2.24 Total: 7.27 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 7.17 Total: 4.49 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -11.27 Total: -106.48 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -1.30 Total: -34.16 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal Total: -87.21 -6.78 -93.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278348660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.695 kcal (2) G-P(sol) polarization free energy of solvation -87.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds