Wall clock time and date at job start Sat Apr 11 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47507 * 2 1 4 4 C 1.34777 * 119.99858 * 89.99839 * 3 2 1 5 5 O 1.21279 * 120.00166 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.99762 * 0.02562 * 4 3 2 7 7 S 1.81003 * 109.46853 * 179.97438 * 6 4 3 8 8 C 1.76196 * 99.99846 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00030 * 359.97438 * 8 7 6 10 10 C 1.38802 * 119.99637 * 180.02562 * 8 7 6 11 11 N 1.31628 * 120.00513 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99570 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47213 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46950 * 120.00258 * 12 10 8 15 15 H 1.48503 * 109.47177 * 240.00017 * 12 10 8 16 16 C 1.46496 * 119.99884 * 270.00494 * 3 2 1 17 17 H 1.09005 * 109.46750 * 179.97438 * 16 3 2 18 18 C 1.52996 * 109.47640 * 59.99862 * 16 3 2 19 19 C 1.53001 * 109.47195 * 299.99538 * 16 3 2 20 20 N 1.46499 * 109.46977 * 305.00394 * 19 16 3 21 21 C 1.34777 * 120.00042 * 180.02562 * 20 19 16 22 22 O 1.21615 * 119.99776 * 359.97438 * 21 20 19 23 23 C 1.47234 * 120.00223 * 179.97438 * 21 20 19 24 24 C 1.37010 * 127.18881 * 179.97438 * 23 21 20 25 25 N 1.33320 * 106.37095 * 180.02562 * 24 23 21 26 26 N 1.28515 * 109.43817 * 359.97438 * 25 24 23 27 27 N 1.28713 * 110.64302 * 359.71952 * 26 25 24 28 28 H 0.96999 * 126.04180 * 180.29459 * 27 26 25 29 29 H 1.08998 * 109.47528 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46948 * 300.00127 * 1 2 3 31 31 H 1.08997 * 109.47177 * 59.99685 * 1 2 3 32 32 H 1.09005 * 109.46948 * 239.99872 * 2 1 3 33 33 H 1.08997 * 109.47177 * 120.00315 * 2 1 3 34 34 H 1.09000 * 109.47318 * 299.99141 * 6 4 3 35 35 H 1.09000 * 109.47161 * 59.99772 * 6 4 3 36 36 H 0.96995 * 120.00407 * 180.02562 * 11 10 8 37 37 H 1.09005 * 109.47109 * 299.99853 * 18 16 3 38 38 H 1.09000 * 109.47163 * 59.99456 * 18 16 3 39 39 H 1.08992 * 109.47336 * 179.97438 * 18 16 3 40 40 H 1.08997 * 109.47014 * 65.00060 * 19 16 3 41 41 H 1.09001 * 109.47120 * 185.00431 * 19 16 3 42 42 H 0.96999 * 120.00504 * 359.97438 * 20 19 16 43 43 H 1.08000 * 126.81390 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0165 1.1672 5 8 2.6470 3.1601 1.1673 6 6 1.9923 1.3058 2.4723 7 16 2.3850 2.4145 3.8481 8 6 2.0114 1.3586 5.2082 9 1 1.6555 0.3545 5.0304 10 6 2.1735 1.8176 6.5081 11 7 2.6058 3.0418 6.7248 12 14 1.7766 0.6982 7.9500 13 1 1.3116 -0.6174 7.4421 14 1 2.9947 0.5064 8.7776 15 1 0.7087 1.3158 8.7768 16 6 2.2625 2.0718 -1.2687 17 1 2.6194 3.0823 -1.0695 18 6 0.9616 2.1399 -2.0710 19 6 3.3171 1.3069 -2.0711 20 7 4.5229 1.1380 -1.2564 21 6 5.5914 0.4895 -1.7605 22 8 5.5544 0.0440 -2.8916 23 6 6.8035 0.3202 -0.9420 24 6 7.9655 -0.3094 -1.3032 25 7 8.7827 -0.2212 -0.2536 26 7 8.1920 0.4117 0.6963 27 7 7.0073 0.7650 0.3381 28 1 6.3702 1.2568 0.8796 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.9444 1.0115 2.5303 35 1 2.6228 0.4185 2.5298 36 1 2.7194 3.3624 7.6331 37 1 0.6043 1.1295 -2.2702 38 1 0.2103 2.6847 -1.4994 39 1 1.1431 2.6541 -3.0147 40 1 2.9247 0.3280 -2.3464 41 1 3.5636 1.8665 -2.9734 42 1 4.5526 1.4936 -0.3544 43 1 8.1771 -0.7839 -2.2501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281488708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:58 Heat of formation + Delta-G solvation = 24.409639 kcal Electronic energy + Delta-G solvation = -27685.825612 eV Core-core repulsion = 23701.875357 eV Total energy + Delta-G solvation = -3983.950255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.60275 -40.52040 -39.52062 -36.90758 -35.05912 -33.80690 -32.62562 -32.53756 -31.55853 -30.37638 -28.89767 -27.12349 -25.60033 -24.34343 -23.59919 -23.06596 -21.94948 -21.27987 -19.78744 -19.04048 -17.90249 -17.29549 -17.08770 -16.65553 -16.61097 -15.98188 -15.41493 -15.24089 -14.90091 -14.67487 -14.52230 -14.29376 -13.96361 -13.65593 -13.47322 -13.35116 -12.93700 -12.82054 -12.64158 -12.47523 -12.42272 -12.09546 -11.79731 -11.56590 -11.27295 -11.15115 -11.12994 -11.05276 -11.02973 -10.84360 -10.62492 -9.91212 -9.88461 -9.64140 -9.51452 -9.17833 -8.87476 -8.38175 -6.64742 -6.32899 -4.05120 0.58805 2.03061 2.16672 2.50186 2.68661 2.71519 2.76267 3.14447 3.17120 3.23676 3.42138 4.01866 4.09311 4.22251 4.35818 4.57247 4.67910 4.70159 4.84135 4.87721 4.90165 5.02759 5.08280 5.12972 5.17462 5.24220 5.34536 5.39641 5.55315 5.62035 5.67166 5.69926 5.73725 5.79015 5.88661 5.92841 6.10975 6.29387 6.42591 6.87829 7.25352 7.49416 7.56793 8.00067 8.24179 8.26384 9.13297 10.74428 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009165 B = 0.003626 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3054.210697 B = 7720.846174 C = 9869.982448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.104 3.896 3 N -0.616 5.616 4 C 0.531 3.469 5 O -0.515 6.515 6 C -0.153 4.153 7 S -0.060 6.060 8 C -0.537 4.537 9 H 0.073 0.927 10 C 0.076 3.924 11 N -0.866 5.866 12 Si 0.917 3.083 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.279 1.279 16 C 0.122 3.878 17 H 0.111 0.889 18 C -0.159 4.159 19 C 0.111 3.889 20 N -0.718 5.718 21 C 0.598 3.402 22 O -0.518 6.518 23 C -0.073 4.073 24 C 0.034 3.966 25 N -0.273 5.273 26 N -0.036 5.036 27 N -0.369 5.369 28 H 0.455 0.545 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.269 0.731 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.401 0.599 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 -6.183 -19.076 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.019 4.019 3 N -0.353 5.353 4 C 0.319 3.681 5 O -0.389 6.389 6 C -0.303 4.303 7 S 0.166 5.834 8 C -0.685 4.685 9 H 0.091 0.909 10 C -0.134 4.134 11 N -0.501 5.501 12 Si 0.744 3.256 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.205 1.205 16 C 0.018 3.982 17 H 0.129 0.871 18 C -0.218 4.218 19 C -0.013 4.013 20 N -0.370 5.370 21 C 0.382 3.618 22 O -0.392 6.392 23 C -0.207 4.207 24 C -0.126 4.126 25 N -0.138 5.138 26 N -0.019 5.019 27 N -0.096 5.096 28 H 0.303 0.697 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.236 0.764 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.071 -4.713 -18.735 19.348 hybrid contribution -2.091 -1.608 0.999 2.821 sum -1.021 -6.320 -17.736 18.856 Atomic orbital electron populations 1.22388 0.95666 1.02419 1.03197 1.21540 0.94802 0.82281 1.03265 1.48152 1.67531 1.14519 1.05081 1.20488 0.76372 0.86501 0.84705 1.90715 1.44302 1.17174 1.86750 1.23613 1.05098 1.04477 0.97155 1.85375 1.86648 1.17970 0.93377 1.22868 1.52082 1.01450 0.92104 0.90899 1.24980 0.94502 0.95512 0.98398 1.70006 1.42794 1.15596 1.21730 0.86136 0.78292 0.80076 0.81133 1.19601 1.20471 1.20491 1.21301 0.94964 0.98165 0.83764 0.87129 1.22174 0.96607 1.02879 1.00103 1.21875 0.83668 1.01672 0.94060 1.45830 1.14592 1.57720 1.18848 1.16719 0.80934 0.78518 0.85629 1.90863 1.81769 1.49080 1.17473 1.22344 1.00267 1.10008 0.88115 1.23908 0.88497 0.99954 1.00267 1.75038 1.25748 1.14658 0.98331 1.78311 0.91399 1.11231 1.20926 1.45737 1.13967 1.38388 1.11551 0.69727 0.91647 0.91878 0.91683 0.90505 0.89940 0.89021 0.89411 0.92126 0.91540 0.91224 0.91190 0.90430 0.89687 0.76405 0.77919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.96 37.16 0.37 -1.07 16 2 C 0.10 0.89 5.35 -4.04 -0.02 0.86 16 3 N -0.62 -6.46 1.88 -166.11 -0.31 -6.77 16 4 C 0.53 8.10 7.40 -10.98 -0.08 8.02 16 5 O -0.52 -9.62 15.19 5.56 0.08 -9.54 16 6 C -0.15 -2.69 4.71 36.01 0.17 -2.52 16 7 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 8 C -0.54 -14.41 9.50 30.94 0.29 -14.12 16 9 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 10 C 0.08 2.06 5.49 -17.43 -0.10 1.97 16 11 N -0.87 -25.04 13.22 55.49 0.73 -24.31 16 12 Si 0.92 20.64 29.55 -169.99 -5.02 15.62 16 13 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 C 0.12 1.07 2.80 -67.93 -0.19 0.88 16 17 H 0.11 1.18 6.90 -51.93 -0.36 0.82 16 18 C -0.16 -1.09 8.14 37.16 0.30 -0.79 16 19 C 0.11 0.88 4.92 -4.04 -0.02 0.86 16 20 N -0.72 -6.49 5.38 -61.45 -0.33 -6.82 16 21 C 0.60 6.29 7.81 -12.61 -0.10 6.19 16 22 O -0.52 -6.63 16.92 5.26 0.09 -6.54 16 23 C -0.07 -0.76 7.17 -82.33 -0.59 -1.35 16 24 C 0.03 0.36 11.87 -17.35 -0.21 0.15 16 25 N -0.27 -3.53 12.35 30.47 0.38 -3.16 16 26 N -0.04 -0.47 13.35 60.35 0.81 0.34 16 27 N -0.37 -3.84 6.98 33.31 0.23 -3.61 16 28 H 0.46 3.88 8.32 -190.33 -1.58 2.29 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.64 7.22 -51.93 -0.38 0.26 16 31 H 0.06 0.47 5.44 -51.93 -0.28 0.19 16 32 H 0.08 0.53 6.53 -51.93 -0.34 0.19 16 33 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 34 H 0.09 1.55 7.19 -51.92 -0.37 1.17 16 35 H 0.09 1.41 7.40 -51.92 -0.38 1.03 16 36 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.07 0.39 6.17 -51.93 -0.32 0.07 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.58 6.88 -51.93 -0.36 0.22 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.40 3.70 7.13 -40.82 -0.29 3.41 16 43 H 0.20 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 374.19 15.07 5.64 5.64 Total: -1.00 -34.19 374.19 -6.74 -40.94 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.66 Total: 2.85 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -0.17 Total: -0.93 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 1.50 Total: -44.33 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.17 Total: -16.08 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.19 -6.74 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281488708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.346 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds