Wall clock time and date at job start Sat Apr 11 2020 06:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47507 * 2 1 4 4 C 1.34777 * 119.99858 * 89.99839 * 3 2 1 5 5 O 1.21279 * 120.00166 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.99762 * 0.02562 * 4 3 2 7 7 S 1.81003 * 109.46853 * 179.97438 * 6 4 3 8 8 C 1.76196 * 99.99846 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00030 * 359.97438 * 8 7 6 10 10 C 1.38802 * 119.99637 * 180.02562 * 8 7 6 11 11 N 1.31628 * 120.00513 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 119.99570 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47213 * 0.02562 * 12 10 8 14 14 H 1.48506 * 109.46950 * 120.00258 * 12 10 8 15 15 H 1.48503 * 109.47177 * 240.00017 * 12 10 8 16 16 C 1.46496 * 119.99884 * 270.00494 * 3 2 1 17 17 H 1.09005 * 109.46750 * 179.97438 * 16 3 2 18 18 C 1.52996 * 109.47640 * 59.99862 * 16 3 2 19 19 C 1.53001 * 109.47195 * 299.99538 * 16 3 2 20 20 N 1.46499 * 109.46977 * 305.00394 * 19 16 3 21 21 C 1.34777 * 120.00042 * 180.02562 * 20 19 16 22 22 O 1.21615 * 119.99776 * 359.97438 * 21 20 19 23 23 C 1.47234 * 120.00223 * 179.97438 * 21 20 19 24 24 C 1.37010 * 127.18881 * 179.97438 * 23 21 20 25 25 N 1.33320 * 106.37095 * 180.02562 * 24 23 21 26 26 N 1.28515 * 109.43817 * 359.97438 * 25 24 23 27 27 N 1.28713 * 110.64302 * 359.71952 * 26 25 24 28 28 H 0.96999 * 126.04180 * 180.29459 * 27 26 25 29 29 H 1.08998 * 109.47528 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46948 * 300.00127 * 1 2 3 31 31 H 1.08997 * 109.47177 * 59.99685 * 1 2 3 32 32 H 1.09005 * 109.46948 * 239.99872 * 2 1 3 33 33 H 1.08997 * 109.47177 * 120.00315 * 2 1 3 34 34 H 1.09000 * 109.47318 * 299.99141 * 6 4 3 35 35 H 1.09000 * 109.47161 * 59.99772 * 6 4 3 36 36 H 0.96995 * 120.00407 * 180.02562 * 11 10 8 37 37 H 1.09005 * 109.47109 * 299.99853 * 18 16 3 38 38 H 1.09000 * 109.47163 * 59.99456 * 18 16 3 39 39 H 1.08992 * 109.47336 * 179.97438 * 18 16 3 40 40 H 1.08997 * 109.47014 * 65.00060 * 19 16 3 41 41 H 1.09001 * 109.47120 * 185.00431 * 19 16 3 42 42 H 0.96999 * 120.00504 * 359.97438 * 20 19 16 43 43 H 1.08000 * 126.81390 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0165 1.1672 5 8 2.6470 3.1601 1.1673 6 6 1.9923 1.3058 2.4723 7 16 2.3850 2.4145 3.8481 8 6 2.0114 1.3586 5.2082 9 1 1.6555 0.3545 5.0304 10 6 2.1735 1.8176 6.5081 11 7 2.6058 3.0418 6.7248 12 14 1.7766 0.6982 7.9500 13 1 1.3116 -0.6174 7.4421 14 1 2.9947 0.5064 8.7776 15 1 0.7087 1.3158 8.7768 16 6 2.2625 2.0718 -1.2687 17 1 2.6194 3.0823 -1.0695 18 6 0.9616 2.1399 -2.0710 19 6 3.3171 1.3069 -2.0711 20 7 4.5229 1.1380 -1.2564 21 6 5.5914 0.4895 -1.7605 22 8 5.5544 0.0440 -2.8916 23 6 6.8035 0.3202 -0.9420 24 6 7.9655 -0.3094 -1.3032 25 7 8.7827 -0.2212 -0.2536 26 7 8.1920 0.4117 0.6963 27 7 7.0073 0.7650 0.3381 28 1 6.3702 1.2568 0.8796 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.9444 1.0115 2.5303 35 1 2.6228 0.4185 2.5298 36 1 2.7194 3.3624 7.6331 37 1 0.6043 1.1295 -2.2702 38 1 0.2103 2.6847 -1.4994 39 1 1.1431 2.6541 -3.0147 40 1 2.9247 0.3280 -2.3464 41 1 3.5636 1.8665 -2.9734 42 1 4.5526 1.4936 -0.3544 43 1 8.1771 -0.7839 -2.2501 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281488708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:56 Heat of formation + Delta-G solvation = -1.060618 kcal Electronic energy + Delta-G solvation = -27686.930085 eV Core-core repulsion = 23701.875357 eV Total energy + Delta-G solvation = -3985.054728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.49066 -41.48043 -40.48169 -37.93452 -35.91549 -34.68729 -34.59392 -33.44805 -32.42227 -31.29199 -30.12018 -27.82946 -27.66332 -25.19839 -24.35873 -23.93939 -22.87748 -22.10911 -20.72746 -20.04896 -19.54294 -18.45894 -17.94489 -17.55385 -17.45831 -16.98042 -16.88607 -16.54322 -16.25543 -15.82054 -15.52109 -15.35946 -14.88598 -14.67092 -14.61125 -14.35359 -14.00763 -13.67036 -13.51017 -13.35701 -13.32749 -13.19607 -13.11491 -12.94115 -12.61729 -12.49419 -12.43447 -12.00053 -11.92841 -11.77515 -11.67345 -11.50571 -11.17010 -10.86594 -10.76134 -10.31250 -10.26309 -9.81624 -8.66039 -8.36490 -6.12890 -0.27336 1.12989 1.24194 1.34518 1.38942 1.44020 1.51505 1.54830 1.76083 1.87464 2.06575 2.25830 2.98596 3.18712 3.23725 3.46889 3.55927 3.74445 3.85271 3.99584 4.04630 4.05525 4.19222 4.20672 4.42196 4.48700 4.53200 4.55468 4.64578 4.75788 4.88580 4.89296 4.97635 5.04299 5.08627 5.27070 5.41439 5.44955 5.48404 5.58905 6.06973 6.18294 6.22401 6.74554 7.06452 7.09922 7.10140 8.72316 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009165 B = 0.003626 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3054.210697 B = 7720.846174 C = 9869.982448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.098 3.902 3 N -0.598 5.598 4 C 0.536 3.464 5 O -0.556 6.556 6 C -0.128 4.128 7 S -0.140 6.140 8 C -0.545 4.545 9 H 0.080 0.920 10 C 0.018 3.982 11 N -0.909 5.909 12 Si 0.990 3.010 13 H -0.258 1.258 14 H -0.276 1.276 15 H -0.275 1.275 16 C 0.124 3.876 17 H 0.090 0.910 18 C -0.154 4.154 19 C 0.114 3.886 20 N -0.713 5.713 21 C 0.606 3.394 22 O -0.538 6.538 23 C -0.070 4.070 24 C 0.033 3.967 25 N -0.295 5.295 26 N -0.063 5.063 27 N -0.358 5.358 28 H 0.461 0.539 29 H 0.083 0.917 30 H 0.039 0.961 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.270 0.730 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.401 0.599 43 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 -8.334 -20.776 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.323 3.677 5 O -0.434 6.434 6 C -0.279 4.279 7 S 0.087 5.913 8 C -0.693 4.693 9 H 0.098 0.902 10 C -0.187 4.187 11 N -0.545 5.545 12 Si 0.813 3.187 13 H -0.181 1.181 14 H -0.201 1.201 15 H -0.201 1.201 16 C 0.021 3.979 17 H 0.108 0.892 18 C -0.212 4.212 19 C -0.009 4.009 20 N -0.363 5.363 21 C 0.390 3.610 22 O -0.414 6.414 23 C -0.205 4.205 24 C -0.127 4.127 25 N -0.159 5.159 26 N -0.045 5.045 27 N -0.087 5.087 28 H 0.310 0.690 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.235 0.765 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.133 -6.887 -20.459 21.587 hybrid contribution -1.782 -0.962 1.360 2.439 sum -1.915 -7.849 -19.098 20.737 Atomic orbital electron populations 1.22361 0.94968 1.03422 1.02576 1.21801 0.95336 0.80786 1.04510 1.48072 1.65738 1.15175 1.04267 1.20046 0.76516 0.85872 0.85235 1.90710 1.46593 1.18815 1.87270 1.23435 1.05848 1.03214 0.95447 1.85476 1.87302 1.21665 0.96829 1.23206 1.51547 1.01718 0.92845 0.90225 1.26001 0.94235 0.96955 1.01486 1.70157 1.44313 1.17682 1.22376 0.85025 0.78080 0.78384 0.77246 1.18143 1.20100 1.20063 1.21423 0.96482 0.97079 0.82936 0.89175 1.22148 0.94779 1.04042 1.00240 1.21977 0.82669 1.02427 0.93856 1.45862 1.14686 1.56933 1.18858 1.16593 0.80946 0.78332 0.85178 1.90859 1.82090 1.50200 1.18215 1.22429 1.00405 1.09706 0.87944 1.24357 0.88117 0.99615 1.00590 1.75010 1.26592 1.15251 0.99026 1.78283 0.92342 1.12374 1.21548 1.45725 1.13513 1.37795 1.11664 0.68968 0.89866 0.94230 0.90582 0.87752 0.90269 0.88096 0.87615 0.92049 0.89786 0.92651 0.89247 0.88908 0.88535 0.76486 0.75618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.32 9.96 71.98 0.72 -1.60 16 2 C 0.10 1.36 5.35 86.38 0.46 1.82 16 3 N -0.60 -11.41 1.88 -797.83 -1.50 -12.91 16 4 C 0.54 16.09 7.40 87.66 0.65 16.74 16 5 O -0.56 -21.18 15.19 -3.03 -0.05 -21.23 16 6 C -0.13 -4.46 4.71 71.24 0.34 -4.13 16 7 S -0.14 -7.12 20.57 -56.49 -1.16 -8.28 16 8 C -0.55 -29.51 9.50 67.96 0.65 -28.87 16 9 H 0.08 4.04 7.80 -2.91 -0.02 4.01 16 10 C 0.02 1.01 5.49 84.86 0.47 1.47 16 11 N -0.91 -53.79 13.22 21.65 0.29 -53.50 16 12 Si 0.99 42.27 29.55 68.60 2.03 44.30 16 13 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 14 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 16 C 0.12 1.90 2.80 44.99 0.13 2.03 16 17 H 0.09 1.85 6.90 -2.38 -0.02 1.83 16 18 C -0.15 -1.65 8.14 71.98 0.59 -1.06 16 19 C 0.11 1.46 4.92 86.38 0.42 1.89 16 20 N -0.71 -11.45 5.38 -466.57 -2.51 -13.96 16 21 C 0.61 11.55 7.81 86.61 0.68 12.22 16 22 O -0.54 -12.50 16.92 -4.08 -0.07 -12.57 16 23 C -0.07 -1.37 7.17 40.41 0.29 -1.09 16 24 C 0.03 0.68 11.87 84.18 1.00 1.68 16 25 N -0.29 -7.52 12.35 -57.50 -0.71 -8.23 16 26 N -0.06 -1.64 13.35 37.02 0.49 -1.15 16 27 N -0.36 -7.33 6.98 -48.51 -0.34 -7.67 16 28 H 0.46 7.83 8.32 -219.90 -1.83 6.00 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.04 0.72 7.22 -2.38 -0.02 0.71 16 31 H 0.08 0.84 5.44 -2.39 -0.01 0.83 16 32 H 0.10 0.97 6.53 -2.38 -0.02 0.95 16 33 H 0.08 1.21 6.44 -2.39 -0.02 1.19 16 34 H 0.10 3.33 7.19 -2.39 -0.02 3.31 16 35 H 0.11 3.28 7.40 -2.40 -0.02 3.26 16 36 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.08 0.63 6.17 -2.38 -0.01 0.61 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 40 H 0.09 0.99 6.88 -2.39 -0.02 0.97 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.40 6.88 7.13 -92.71 -0.66 6.21 16 43 H 0.23 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -76.11 374.19 1.44 -74.67 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -1.41 Total: 19.44 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 6.38 Total: 1.10 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -4.28 Total: -97.43 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.11 Total: -33.80 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: -7.12 SS G_CDS: -1.16 Total: -8.28 kcal Total: -76.11 1.44 -74.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281488708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.609 kcal (2) G-P(sol) polarization free energy of solvation -76.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds