Wall clock time and date at job start Sat Apr 11 2020 06:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.52999 * 109.46735 * 175.00021 * 4 2 1 6 6 C 1.52999 * 109.47222 * 180.02562 * 5 4 2 7 7 N 1.46893 * 109.47464 * 180.02562 * 6 5 4 8 8 C 1.46898 * 111.00327 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47645 * 180.02562 * 8 7 6 10 10 O 1.21299 * 119.99463 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00444 * 180.02562 * 9 8 7 12 12 C 1.37102 * 120.00221 * 179.97438 * 11 9 8 13 13 H 1.08004 * 120.00037 * 359.97438 * 12 11 9 14 14 C 1.38955 * 119.99974 * 179.97438 * 12 11 9 15 15 N 1.31407 * 120.00148 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99799 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47333 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47416 * 119.99955 * 16 14 12 19 19 H 1.48504 * 109.47245 * 240.00145 * 16 14 12 20 20 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 21 21 C 1.34784 * 119.99635 * 274.99773 * 20 2 1 22 22 O 1.21565 * 119.99932 * 0.02562 * 21 20 2 23 23 C 1.47754 * 119.99860 * 179.97438 * 21 20 2 24 24 C 1.39348 * 124.11731 * 179.97438 * 23 21 20 25 25 N 1.30090 * 112.14549 * 179.97438 * 24 23 21 26 26 S 1.55916 * 108.75519 * 0.02562 * 25 24 23 27 27 N 1.31485 * 124.11606 * 359.70464 * 23 21 20 28 28 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 31 31 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 32 32 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 33 33 H 1.09002 * 109.47226 * 300.00134 * 5 4 2 34 34 H 1.09002 * 109.47308 * 60.00186 * 5 4 2 35 35 H 1.09002 * 109.47060 * 300.00151 * 6 5 4 36 36 H 1.09002 * 109.46897 * 59.99849 * 6 5 4 37 37 H 1.00902 * 111.00070 * 303.95606 * 7 6 5 38 38 H 1.09007 * 109.47018 * 300.00124 * 8 7 6 39 39 H 1.09000 * 109.47250 * 60.00070 * 8 7 6 40 40 H 0.97003 * 119.99929 * 359.97438 * 11 9 8 41 41 H 0.97000 * 120.00051 * 180.02562 * 15 14 12 42 42 H 0.96995 * 120.00292 * 95.27206 * 20 2 1 43 43 H 1.08003 * 123.92380 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 7 5.5387 -1.2309 -2.6249 8 6 6.0650 -1.9126 -3.8150 9 6 7.5664 -1.7864 -3.8437 10 8 8.1415 -1.1869 -2.9598 11 7 8.2700 -2.3385 -4.8518 12 6 9.6359 -2.2232 -4.8781 13 1 10.1480 -1.6895 -4.0911 14 6 10.3614 -2.7930 -5.9172 15 7 9.7383 -3.4428 -6.8745 16 14 12.2223 -2.6353 -5.9534 17 1 12.6766 -1.8618 -4.7700 18 1 12.8345 -3.9880 -5.9260 19 1 12.6353 -1.9301 -7.1933 20 7 2.0184 -0.6907 1.1961 21 6 2.1471 -0.0183 2.3571 22 8 1.8576 1.1611 2.4118 23 6 2.6391 -0.7150 3.5636 24 6 2.8053 -0.1049 4.8053 25 7 3.2505 -0.9340 5.7035 26 16 3.4382 -2.3342 5.0439 27 7 2.9685 -1.9875 3.5976 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -1.7715 -1.2057 32 1 1.6054 -0.2617 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9994 -1.0729 -0.4261 35 1 3.7863 -2.3843 -2.5202 36 1 3.6400 -0.8740 -3.4508 37 1 5.8347 -0.2666 -2.6006 38 1 5.7899 -2.9669 -3.7812 39 1 5.6445 -1.4560 -4.7110 40 1 7.8100 -2.8176 -5.5588 41 1 10.2448 -3.8409 -7.5997 42 1 2.2528 -1.6308 1.1515 43 1 2.5895 0.9354 4.9995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283135013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:07 Heat of formation + Delta-G solvation = -24.826499 kcal Electronic energy + Delta-G solvation = -25792.265974 eV Core-core repulsion = 21806.180680 eV Total energy + Delta-G solvation = -3986.085294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 6.61 seconds Orbital eigenvalues (eV) -41.52306 -39.66108 -38.31691 -37.13259 -35.54495 -34.17759 -33.86891 -32.45144 -31.23131 -30.61496 -27.81766 -27.33849 -25.18889 -24.04114 -23.29826 -21.55602 -21.19087 -20.77803 -19.79031 -19.20577 -18.13445 -17.87636 -16.71727 -16.46104 -16.18293 -15.79436 -15.63081 -15.02605 -14.72769 -14.64361 -14.45886 -14.13794 -13.93303 -13.62814 -13.34270 -13.13246 -12.79055 -12.63917 -12.45436 -12.02225 -11.87718 -11.67847 -11.63716 -11.57031 -11.46389 -11.44750 -11.34790 -11.08439 -10.95800 -10.77234 -10.45489 -10.34273 -10.22312 -9.68925 -9.51956 -9.42030 -8.45611 -8.04591 -7.95567 -6.41793 -3.82488 0.00032 0.96037 1.12982 1.19678 2.68453 2.74640 3.16340 3.26819 3.34348 3.91212 4.01718 4.06232 4.23443 4.38112 4.55845 4.67678 4.73306 4.81560 5.01987 5.05254 5.15137 5.23648 5.25056 5.30863 5.37332 5.48935 5.55861 5.64982 5.70885 5.80345 5.87757 5.94284 5.98928 6.03006 6.17179 6.19001 6.28784 7.08073 7.24458 7.55483 7.67851 7.71849 8.06892 8.61546 9.18154 9.54614 10.06194 10.76080 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.001816 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.805608 B =15411.080794 C =16992.967022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 H 0.094 0.906 4 C -0.126 4.126 5 C -0.119 4.119 6 C 0.059 3.941 7 N -0.671 5.671 8 C 0.051 3.949 9 C 0.441 3.559 10 O -0.583 6.583 11 N -0.565 5.565 12 C -0.298 4.298 13 H 0.103 0.897 14 C 0.021 3.979 15 N -0.902 5.902 16 Si 0.930 3.070 17 H -0.268 1.268 18 H -0.281 1.281 19 H -0.282 1.282 20 N -0.701 5.701 21 C 0.607 3.393 22 O -0.524 6.524 23 C 0.009 3.991 24 C 0.090 3.910 25 N -0.579 5.579 26 S 0.727 5.273 27 N -0.546 5.546 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.349 0.651 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.392 0.608 41 H 0.271 0.729 42 H 0.410 0.590 43 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.704 1.834 17.623 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.112 0.888 4 C -0.164 4.164 5 C -0.157 4.157 6 C -0.070 4.070 7 N -0.303 5.303 8 C -0.082 4.082 9 C 0.226 3.774 10 O -0.467 6.467 11 N -0.201 5.201 12 C -0.428 4.428 13 H 0.121 0.879 14 C -0.180 4.180 15 N -0.544 5.544 16 Si 0.757 3.243 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.208 1.208 20 N -0.352 5.352 21 C 0.387 3.613 22 O -0.399 6.399 23 C -0.166 4.166 24 C -0.104 4.104 25 N -0.420 5.420 26 S 0.769 5.231 27 N -0.396 5.396 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.168 0.832 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.246 0.754 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -20.654 0.654 19.325 28.293 hybrid contribution -0.038 1.351 -2.016 2.427 sum -20.693 2.006 17.310 27.052 Atomic orbital electron populations 1.22185 0.94895 1.02328 1.02791 1.21122 0.94061 0.97809 0.83283 0.88838 1.21886 0.96378 1.01269 0.96877 1.21575 0.93935 1.01133 0.99023 1.21966 0.88287 1.00508 0.96256 1.60072 1.08071 1.21502 1.40670 1.21666 0.94984 1.00118 0.91426 1.19837 0.88145 0.84949 0.84465 1.90525 1.71172 1.46308 1.38731 1.41875 1.07431 1.48591 1.22238 1.19758 0.81521 1.32743 1.08759 0.87883 1.25269 1.00722 0.96606 0.95447 1.69619 1.36601 1.35996 1.12144 0.85796 0.82216 0.78006 0.78302 1.19218 1.20732 1.20774 1.45914 1.65654 1.14793 1.08876 1.16726 0.77630 0.85514 0.81403 1.90838 1.50305 1.14517 1.84260 1.22518 1.07129 0.88736 0.98196 1.23786 0.97435 1.02692 0.86458 1.72265 1.22643 1.09419 1.37662 1.79175 1.42698 1.12596 0.88622 1.72429 1.19010 1.18980 1.29201 0.92326 0.92013 0.91238 0.91023 0.89981 0.91797 0.90860 0.91230 0.95623 0.83234 0.89673 0.93936 0.77464 0.91937 0.75365 0.76929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.48 37.16 0.35 -0.74 16 2 C 0.14 1.08 2.57 -67.93 -0.17 0.91 16 3 H 0.09 0.85 7.58 -51.93 -0.39 0.46 16 4 C -0.13 -0.88 4.75 -26.73 -0.13 -1.01 16 5 C -0.12 -1.17 5.36 -26.73 -0.14 -1.31 16 6 C 0.06 0.70 5.68 -3.83 -0.02 0.67 16 7 N -0.67 -10.95 6.13 -115.06 -0.70 -11.65 16 8 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 9 C 0.44 10.57 7.82 -10.99 -0.09 10.48 16 10 O -0.58 -16.13 15.78 5.54 0.09 -16.05 16 11 N -0.56 -14.47 5.29 -10.96 -0.06 -14.53 16 12 C -0.30 -8.40 9.68 -14.93 -0.14 -8.55 16 13 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 14 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 15 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 16 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 N -0.70 -5.89 4.53 -54.78 -0.25 -6.14 16 21 C 0.61 6.15 7.79 -12.37 -0.10 6.05 16 22 O -0.52 -6.49 16.47 5.31 0.09 -6.40 16 23 C 0.01 0.09 6.81 -83.71 -0.57 -0.48 16 24 C 0.09 0.76 11.22 -17.88 -0.20 0.56 16 25 N -0.58 -4.97 11.41 19.42 0.22 -4.74 16 26 S 0.73 4.88 23.69 -107.50 -2.55 2.33 16 27 N -0.55 -4.74 11.00 23.17 0.25 -4.48 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.35 5.92 8.43 -39.29 -0.33 5.59 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.39 9.57 7.90 -40.82 -0.32 9.24 16 41 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.41 3.14 8.19 -40.82 -0.33 2.80 16 43 H 0.21 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 385.85 15.07 5.81 5.81 Total: -1.00 -33.95 385.85 -8.67 -42.63 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -5.94 Total: 13.06 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -1.34 Total: 7.93 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: 0.19 Total: -65.47 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: 0.17 Total: -22.45 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 4.88 SS G_CDS: -2.55 Total: 2.33 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.95 -8.67 -42.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283135013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.802 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.62 seconds