Wall clock time and date at job start Sat Apr 11 2020 06:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.52999 * 109.46735 * 175.00021 * 4 2 1 6 6 C 1.52999 * 109.47222 * 180.02562 * 5 4 2 7 7 N 1.46893 * 109.47464 * 180.02562 * 6 5 4 8 8 C 1.46898 * 111.00327 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47645 * 180.02562 * 8 7 6 10 10 O 1.21299 * 119.99463 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00444 * 180.02562 * 9 8 7 12 12 C 1.37102 * 120.00221 * 179.97438 * 11 9 8 13 13 H 1.08004 * 120.00037 * 359.97438 * 12 11 9 14 14 C 1.38955 * 119.99974 * 179.97438 * 12 11 9 15 15 N 1.31407 * 120.00148 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99799 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47333 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47416 * 119.99955 * 16 14 12 19 19 H 1.48504 * 109.47245 * 240.00145 * 16 14 12 20 20 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 21 21 C 1.34784 * 119.99635 * 274.99773 * 20 2 1 22 22 O 1.21565 * 119.99932 * 0.02562 * 21 20 2 23 23 C 1.47754 * 119.99860 * 179.97438 * 21 20 2 24 24 C 1.39348 * 124.11731 * 179.97438 * 23 21 20 25 25 N 1.30090 * 112.14549 * 179.97438 * 24 23 21 26 26 S 1.55916 * 108.75519 * 0.02562 * 25 24 23 27 27 N 1.31485 * 124.11606 * 359.70464 * 23 21 20 28 28 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 31 31 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 32 32 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 33 33 H 1.09002 * 109.47226 * 300.00134 * 5 4 2 34 34 H 1.09002 * 109.47308 * 60.00186 * 5 4 2 35 35 H 1.09002 * 109.47060 * 300.00151 * 6 5 4 36 36 H 1.09002 * 109.46897 * 59.99849 * 6 5 4 37 37 H 1.00902 * 111.00070 * 303.95606 * 7 6 5 38 38 H 1.09007 * 109.47018 * 300.00124 * 8 7 6 39 39 H 1.09000 * 109.47250 * 60.00070 * 8 7 6 40 40 H 0.97003 * 119.99929 * 359.97438 * 11 9 8 41 41 H 0.97000 * 120.00051 * 180.02562 * 15 14 12 42 42 H 0.96995 * 120.00292 * 95.27206 * 20 2 1 43 43 H 1.08003 * 123.92380 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0747 -1.3340 -2.5633 7 7 5.5387 -1.2309 -2.6249 8 6 6.0650 -1.9126 -3.8150 9 6 7.5664 -1.7864 -3.8437 10 8 8.1415 -1.1869 -2.9598 11 7 8.2700 -2.3385 -4.8518 12 6 9.6359 -2.2232 -4.8781 13 1 10.1480 -1.6895 -4.0911 14 6 10.3614 -2.7930 -5.9172 15 7 9.7383 -3.4428 -6.8745 16 14 12.2223 -2.6353 -5.9534 17 1 12.6766 -1.8618 -4.7700 18 1 12.8345 -3.9880 -5.9260 19 1 12.6353 -1.9301 -7.1933 20 7 2.0184 -0.6907 1.1961 21 6 2.1471 -0.0183 2.3571 22 8 1.8576 1.1611 2.4118 23 6 2.6391 -0.7150 3.5636 24 6 2.8053 -0.1049 4.8053 25 7 3.2505 -0.9340 5.7035 26 16 3.4382 -2.3342 5.0439 27 7 2.9685 -1.9875 3.5976 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7516 -1.7715 -1.2057 32 1 1.6054 -0.2617 -2.1370 33 1 3.8532 0.4370 -1.3574 34 1 3.9994 -1.0729 -0.4261 35 1 3.7863 -2.3843 -2.5202 36 1 3.6400 -0.8740 -3.4508 37 1 5.8347 -0.2666 -2.6006 38 1 5.7899 -2.9669 -3.7812 39 1 5.6445 -1.4560 -4.7110 40 1 7.8100 -2.8176 -5.5588 41 1 10.2448 -3.8409 -7.5997 42 1 2.2528 -1.6308 1.1515 43 1 2.5895 0.9354 4.9995 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283135013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:00 Heat of formation + Delta-G solvation = -52.300502 kcal Electronic energy + Delta-G solvation = -25793.457337 eV Core-core repulsion = 21806.180680 eV Total energy + Delta-G solvation = -3987.276657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.18668 -40.38644 -40.15351 -38.01476 -36.68295 -35.86665 -34.83136 -33.43759 -33.16659 -31.43719 -28.65815 -28.47298 -26.67833 -25.10725 -24.32237 -22.43317 -21.86808 -21.49176 -21.04226 -20.39502 -19.91222 -18.83128 -17.82330 -17.42800 -17.16917 -17.01709 -16.51397 -16.39594 -16.02021 -15.72093 -15.62527 -15.35671 -15.17442 -14.88959 -14.33159 -14.17484 -14.01384 -13.52792 -13.33764 -13.27529 -13.07814 -12.95890 -12.76428 -12.52114 -12.42440 -12.32165 -12.28102 -12.14208 -12.10979 -12.08438 -11.77486 -11.54719 -11.51631 -11.20277 -10.37278 -10.33705 -10.06890 -10.02890 -9.30786 -8.48031 -5.96834 -0.65581 0.34610 0.44974 0.61506 1.35878 1.41273 1.55558 1.99170 2.03657 2.04085 2.28512 2.92454 3.19106 3.39815 3.50358 3.68281 3.81488 4.02446 4.06537 4.14205 4.30144 4.32532 4.44113 4.46474 4.52466 4.58847 4.65283 4.72184 4.82772 4.88786 4.93224 5.05683 5.24634 5.30000 5.32985 5.39738 5.41882 5.51848 5.90267 6.12956 6.38737 6.40836 6.58983 7.00640 7.11439 7.54815 8.10368 8.69569 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.001816 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.805608 B =15411.080794 C =16992.967022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.112 4.112 6 C 0.061 3.939 7 N -0.689 5.689 8 C 0.066 3.934 9 C 0.435 3.565 10 O -0.626 6.626 11 N -0.573 5.573 12 C -0.334 4.334 13 H 0.077 0.923 14 C -0.014 4.014 15 N -0.919 5.919 16 Si 0.993 3.007 17 H -0.275 1.275 18 H -0.270 1.270 19 H -0.270 1.270 20 N -0.694 5.694 21 C 0.604 3.396 22 O -0.554 6.554 23 C -0.007 4.007 24 C 0.086 3.914 25 N -0.601 5.601 26 S 0.788 5.212 27 N -0.561 5.561 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.341 0.659 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.415 0.585 43 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.601 0.741 17.070 28.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.067 4.067 7 N -0.322 5.322 8 C -0.067 4.067 9 C 0.223 3.777 10 O -0.512 6.512 11 N -0.210 5.210 12 C -0.464 4.464 13 H 0.095 0.905 14 C -0.213 4.213 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.199 1.199 18 H -0.195 1.195 19 H -0.195 1.195 20 N -0.345 5.345 21 C 0.385 3.615 22 O -0.432 6.432 23 C -0.180 4.180 24 C -0.106 4.106 25 N -0.443 5.443 26 S 0.830 5.170 27 N -0.413 5.413 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.159 0.841 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.252 0.748 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -21.593 -0.461 18.740 28.595 hybrid contribution 0.236 1.621 -1.783 2.421 sum -21.356 1.160 16.957 27.294 Atomic orbital electron populations 1.22125 0.93747 1.02960 1.02704 1.21165 0.94880 0.97000 0.83289 0.90552 1.21808 0.94040 1.02286 0.97015 1.21502 0.95875 1.00109 0.97559 1.22075 0.85409 1.01612 0.97629 1.60099 1.11069 1.20961 1.40033 1.21533 0.90116 1.01777 0.93255 1.20959 0.90766 0.83021 0.82944 1.90492 1.72888 1.47766 1.40095 1.41943 1.06896 1.49188 1.22995 1.19693 0.83065 1.34397 1.09202 0.90479 1.26051 1.04973 0.95679 0.94622 1.69671 1.38234 1.35798 1.12325 0.84866 0.76812 0.78360 0.78258 1.19920 1.19496 1.19501 1.45941 1.64929 1.14935 1.08692 1.16896 0.77328 0.85262 0.82033 1.90813 1.51855 1.15728 1.84827 1.22392 1.08379 0.89040 0.98211 1.23912 0.97243 1.03245 0.86189 1.72189 1.23302 1.10448 1.38320 1.78911 1.40278 1.10963 0.86872 1.72291 1.19404 1.18898 1.30743 0.91274 0.93657 0.89784 0.89496 0.88277 0.92747 0.92416 0.90136 0.93938 0.84074 0.87730 0.91515 0.76894 0.91247 0.74824 0.75983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.48 71.98 0.68 -1.18 16 2 C 0.14 2.02 2.57 45.00 0.12 2.13 16 3 H 0.08 1.39 7.58 -2.39 -0.02 1.37 16 4 C -0.11 -1.33 4.75 30.60 0.15 -1.18 16 5 C -0.11 -2.06 5.36 30.59 0.16 -1.89 16 6 C 0.06 1.29 5.68 86.30 0.49 1.78 16 7 N -0.69 -21.71 6.13 -517.94 -3.17 -24.89 16 8 C 0.07 2.24 6.17 85.56 0.53 2.77 16 9 C 0.44 21.01 7.82 87.66 0.69 21.70 16 10 O -0.63 -35.46 15.78 -3.09 -0.05 -35.51 16 11 N -0.57 -29.66 5.29 -306.98 -1.62 -31.28 16 12 C -0.33 -19.17 9.68 84.04 0.81 -18.35 16 13 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 14 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 15 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 16 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 20 N -0.69 -11.35 4.53 -445.48 -2.02 -13.37 16 21 C 0.60 12.42 7.79 86.76 0.68 13.09 16 22 O -0.55 -14.20 16.47 -3.92 -0.06 -14.26 16 23 C -0.01 -0.13 6.81 41.98 0.29 0.16 16 24 C 0.09 1.44 11.22 85.22 0.96 2.40 16 25 N -0.60 -9.91 11.41 -92.48 -1.06 -10.96 16 26 S 0.79 9.69 23.69 -56.49 -1.34 8.35 16 27 N -0.56 -9.34 11.00 -80.60 -0.89 -10.23 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.24 7.75 -2.39 -0.02 1.22 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.34 11.51 8.43 -89.69 -0.76 10.76 16 38 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.40 19.37 7.90 -92.71 -0.73 18.63 16 41 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 42 H 0.41 5.97 8.19 -92.71 -0.76 5.21 16 43 H 0.22 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -74.04 385.85 -3.06 -77.10 By element: Atomic # 1 Polarization: 39.21 SS G_CDS: -1.17 Total: 38.03 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 6.01 Total: 21.17 kcal Atomic # 7 Polarization: -131.55 SS G_CDS: -8.47 Total: -140.02 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.11 Total: -49.77 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 9.69 SS G_CDS: -1.34 Total: 8.35 kcal Total: -74.04 -3.06 -77.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283135013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.800 kcal (2) G-P(sol) polarization free energy of solvation -74.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds