Wall clock time and date at job start Sat Apr 11 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47147 * 2 1 4 4 C 1.53001 * 109.47485 * 239.99551 * 2 1 3 5 5 N 1.46503 * 109.47041 * 185.00185 * 4 2 1 6 6 C 1.34778 * 119.99825 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99982 * 179.97438 * 6 5 4 9 9 S 1.80994 * 109.47023 * 179.97438 * 8 6 5 10 10 C 1.76196 * 100.00020 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00054 * 0.02562 * 10 9 8 12 12 C 1.38804 * 120.00076 * 179.97438 * 10 9 8 13 13 N 1.31630 * 120.00136 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00014 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47003 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.46936 * 120.00321 * 14 12 10 17 17 H 1.48499 * 109.46797 * 240.00421 * 14 12 10 18 18 N 1.46500 * 109.47223 * 119.99209 * 2 1 3 19 19 C 1.34780 * 120.00136 * 275.00326 * 18 2 1 20 20 O 1.21279 * 120.00136 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99830 * 179.97438 * 19 18 2 22 22 C 1.53003 * 109.47148 * 180.02562 * 21 19 18 23 23 C 1.50690 * 109.47160 * 180.02562 * 22 21 19 24 24 C 1.35351 * 126.91729 * 274.95578 * 23 22 21 25 25 N 1.33769 * 106.50107 * 180.02562 * 24 23 22 26 26 N 1.28629 * 108.88659 * 359.97438 * 25 24 23 27 27 N 1.28714 * 110.17964 * 0.02562 * 26 25 24 28 28 H 0.97001 * 125.86941 * 179.73092 * 27 26 25 29 29 H 1.08991 * 109.47526 * 300.00430 * 1 2 3 30 30 H 1.09000 * 109.47108 * 60.00994 * 1 2 3 31 31 H 1.09006 * 109.46575 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46820 * 304.99835 * 4 2 1 33 33 H 1.09001 * 109.47048 * 64.99595 * 4 2 1 34 34 H 0.97001 * 120.00142 * 359.97438 * 5 4 2 35 35 H 1.08996 * 109.46608 * 299.99353 * 8 6 5 36 36 H 1.08999 * 109.47004 * 59.99663 * 8 6 5 37 37 H 0.97001 * 120.00094 * 179.97438 * 13 12 10 38 38 H 0.96999 * 120.00038 * 94.99960 * 18 2 1 39 39 H 1.09004 * 109.47468 * 60.00474 * 21 19 18 40 40 H 1.08997 * 109.47733 * 300.00178 * 21 19 18 41 41 H 1.08996 * 109.46925 * 59.99700 * 22 21 19 42 42 H 1.09004 * 109.46804 * 300.00198 * 22 21 19 43 43 H 1.08004 * 126.74797 * 0.05551 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4284 -2.1909 7 8 3.5702 -1.8835 -3.1397 8 6 5.6752 -1.5360 -2.1307 9 16 6.2785 -2.3895 -3.6084 10 6 8.0104 -2.3753 -3.2842 11 1 8.3866 -1.9221 -2.3790 12 6 8.8911 -2.9474 -4.1918 13 7 8.4325 -3.5002 -5.2949 14 14 10.7271 -2.9329 -3.8478 15 1 10.9823 -2.2570 -2.5504 16 1 11.2300 -4.3287 -3.7856 17 1 11.4284 -2.2020 -4.9336 18 7 2.0183 -0.6904 1.1963 19 6 2.1470 -0.0180 2.3572 20 8 1.8581 1.1587 2.4117 21 6 2.6488 -0.7284 3.5878 22 6 2.6998 0.2547 4.7591 23 6 3.2021 -0.4555 5.9895 24 6 2.4684 -1.1788 6.8674 25 7 3.3195 -1.6225 7.7990 26 7 4.5021 -1.2025 7.5166 27 7 4.4777 -0.4985 6.4394 28 1 5.2417 -0.0691 6.0236 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 1.6055 -1.7199 -1.2950 33 1 1.7517 -0.1585 -2.1369 34 1 3.9825 -0.4622 -0.4317 35 1 6.1094 -0.5373 -2.0848 36 1 5.9638 -2.0990 -1.2431 37 1 9.0480 -3.8997 -5.9293 38 1 2.2490 -1.6316 1.1528 39 1 3.6480 -1.1209 3.3988 40 1 1.9760 -1.5502 3.8328 41 1 1.7005 0.6468 4.9480 42 1 3.3724 1.0768 4.5144 43 1 1.4049 -1.3620 6.8238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284201034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:33 Heat of formation + Delta-G solvation = 4.914169 kcal Electronic energy + Delta-G solvation = -25809.818466 eV Core-core repulsion = 21825.022823 eV Total energy + Delta-G solvation = -3984.795642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -43.75920 -40.47283 -39.22993 -36.77337 -34.95244 -33.81944 -33.61681 -32.48906 -31.79742 -30.20464 -29.45228 -26.20555 -25.66035 -25.37451 -23.43198 -22.41448 -21.60963 -20.83405 -20.45950 -18.77902 -18.06591 -17.58563 -16.94096 -16.50037 -16.37235 -16.13232 -15.89081 -15.15205 -14.90818 -14.86206 -14.69325 -14.35642 -14.05107 -13.89983 -13.49938 -13.18203 -13.01120 -12.93828 -12.92895 -12.62510 -12.31802 -12.22310 -11.90466 -11.87771 -11.39875 -11.30323 -11.12026 -11.08513 -11.04466 -10.81374 -10.38033 -9.87560 -9.64682 -9.63694 -9.50381 -9.14541 -9.05917 -8.30999 -6.57275 -6.27920 -3.99022 1.05564 2.09047 2.15054 2.25302 2.65121 2.93059 2.97674 3.17055 3.23434 3.27432 3.60354 3.86977 4.11007 4.14204 4.24376 4.27655 4.39660 4.57975 4.67211 4.73560 4.86897 4.91372 4.93845 5.04524 5.07532 5.24387 5.29428 5.36101 5.36738 5.43931 5.57165 5.65578 5.66123 5.78224 5.81239 6.01943 6.03802 6.34542 6.43042 6.99457 7.52757 7.54580 7.72904 7.99271 8.29042 8.47089 9.17658 10.79511 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009134 B = 0.002200 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.746646 B =12725.898070 C =15397.108347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.096 0.904 4 C 0.112 3.888 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.515 6.515 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.279 1.279 17 H -0.279 1.279 18 N -0.726 5.726 19 C 0.517 3.483 20 O -0.538 6.538 21 C -0.140 4.140 22 C -0.032 4.032 23 C -0.010 4.010 24 C -0.045 4.045 25 N -0.266 5.266 26 N -0.080 5.080 27 N -0.388 5.388 28 H 0.449 0.551 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.398 0.602 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.268 0.732 38 H 0.405 0.595 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.083 8.161 20.133 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.396 5.396 6 C 0.318 3.682 7 O -0.389 6.389 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 N -0.379 5.379 19 C 0.303 3.697 20 O -0.415 6.415 21 C -0.181 4.181 22 C -0.072 4.072 23 C -0.144 4.144 24 C -0.203 4.203 25 N -0.133 5.133 26 N -0.060 5.060 27 N -0.109 5.109 28 H 0.294 0.706 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.240 0.760 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -15.489 7.505 19.618 26.098 hybrid contribution 2.060 0.889 0.447 2.288 sum -13.429 8.393 20.065 25.562 Atomic orbital electron populations 1.22101 0.93914 1.02755 1.03164 1.21268 0.95043 0.97827 0.83229 0.88583 1.21624 0.81148 1.01374 0.97090 1.45994 1.06766 1.62145 1.24664 1.20333 0.89542 0.76729 0.81598 1.90716 1.69852 1.45881 1.32403 1.23527 0.93452 1.05703 1.07742 1.85416 1.04707 1.72959 1.20200 1.22890 0.91452 1.44340 1.09726 0.90906 1.25002 0.99647 0.94505 0.94451 1.70022 1.35369 1.35408 1.09401 0.86111 0.82912 0.78028 0.78407 1.19640 1.20532 1.20520 1.46164 1.67530 1.14499 1.09683 1.20537 0.77411 0.87278 0.84486 1.90740 1.49849 1.15911 1.84986 1.21697 1.04111 0.99767 0.92504 1.19858 1.03920 0.96233 0.87163 1.22304 0.85057 1.05645 1.01374 1.23472 1.01747 1.01537 0.93518 1.75135 0.95679 1.19332 1.23142 1.78342 1.17819 1.08915 1.00953 1.45195 1.09854 1.36459 1.19397 0.70555 0.91567 0.91001 0.91957 0.90856 0.89912 0.76827 0.89246 0.89311 0.92176 0.76040 0.88494 0.87880 0.87736 0.89350 0.79167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 9.48 37.16 0.35 -0.64 16 2 C 0.13 0.91 2.73 -67.93 -0.19 0.73 16 3 H 0.10 0.80 7.58 -51.93 -0.39 0.40 16 4 C 0.11 1.03 5.23 -4.04 -0.02 1.01 16 5 N -0.74 -8.31 5.39 -60.29 -0.32 -8.63 16 6 C 0.53 9.03 7.85 -10.98 -0.09 8.94 16 7 O -0.51 -10.90 15.86 5.56 0.09 -10.81 16 8 C -0.15 -2.90 6.16 36.01 0.22 -2.68 16 9 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 10 C -0.54 -14.86 9.50 30.94 0.29 -14.56 16 11 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 12 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 13 N -0.87 -25.65 13.22 55.49 0.73 -24.92 16 14 Si 0.92 20.96 29.55 -169.99 -5.02 15.94 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 N -0.73 -4.06 4.52 -53.80 -0.24 -4.31 16 19 C 0.52 3.25 7.79 -10.98 -0.09 3.17 16 20 O -0.54 -5.32 15.64 5.56 0.09 -5.23 16 21 C -0.14 -0.49 5.68 -27.88 -0.16 -0.65 16 22 C -0.03 -0.12 5.07 -27.89 -0.14 -0.26 16 23 C -0.01 -0.05 6.56 -82.09 -0.54 -0.59 16 24 C -0.05 -0.31 11.99 -17.74 -0.21 -0.53 16 25 N -0.27 -2.74 12.41 30.24 0.38 -2.37 16 26 N -0.08 -0.77 13.38 60.35 0.81 0.04 16 27 N -0.39 -2.30 6.98 33.54 0.23 -2.06 16 28 H 0.45 1.18 8.96 -190.40 -1.71 -0.52 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.40 3.56 8.14 -40.82 -0.33 3.23 16 35 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 36 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.40 1.74 8.60 -40.82 -0.35 1.39 16 39 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.10 0.41 8.10 -51.93 -0.42 -0.01 16 42 H 0.09 0.35 8.10 -51.93 -0.42 -0.07 16 43 H 0.19 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 389.32 15.07 5.87 5.87 Total: -1.00 -38.27 389.32 -7.67 -45.94 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -7.40 Total: -1.56 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -0.66 Total: -4.12 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 1.58 Total: -42.25 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.18 Total: -16.04 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.27 -7.67 -45.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.853 kcal (2) G-P(sol) polarization free energy of solvation -38.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds