Wall clock time and date at job start Sat Apr 11 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47147 * 2 1 4 4 C 1.53001 * 109.47485 * 239.99551 * 2 1 3 5 5 N 1.46503 * 109.47041 * 185.00185 * 4 2 1 6 6 C 1.34778 * 119.99825 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99982 * 179.97438 * 6 5 4 9 9 S 1.80994 * 109.47023 * 179.97438 * 8 6 5 10 10 C 1.76196 * 100.00020 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00054 * 0.02562 * 10 9 8 12 12 C 1.38804 * 120.00076 * 179.97438 * 10 9 8 13 13 N 1.31630 * 120.00136 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00014 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47003 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.46936 * 120.00321 * 14 12 10 17 17 H 1.48499 * 109.46797 * 240.00421 * 14 12 10 18 18 N 1.46500 * 109.47223 * 119.99209 * 2 1 3 19 19 C 1.34780 * 120.00136 * 275.00326 * 18 2 1 20 20 O 1.21279 * 120.00136 * 0.02562 * 19 18 2 21 21 C 1.50700 * 119.99830 * 179.97438 * 19 18 2 22 22 C 1.53003 * 109.47148 * 180.02562 * 21 19 18 23 23 C 1.50690 * 109.47160 * 180.02562 * 22 21 19 24 24 C 1.35351 * 126.91729 * 274.95578 * 23 22 21 25 25 N 1.33769 * 106.50107 * 180.02562 * 24 23 22 26 26 N 1.28629 * 108.88659 * 359.97438 * 25 24 23 27 27 N 1.28714 * 110.17964 * 0.02562 * 26 25 24 28 28 H 0.97001 * 125.86941 * 179.73092 * 27 26 25 29 29 H 1.08991 * 109.47526 * 300.00430 * 1 2 3 30 30 H 1.09000 * 109.47108 * 60.00994 * 1 2 3 31 31 H 1.09006 * 109.46575 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46820 * 304.99835 * 4 2 1 33 33 H 1.09001 * 109.47048 * 64.99595 * 4 2 1 34 34 H 0.97001 * 120.00142 * 359.97438 * 5 4 2 35 35 H 1.08996 * 109.46608 * 299.99353 * 8 6 5 36 36 H 1.08999 * 109.47004 * 59.99663 * 8 6 5 37 37 H 0.97001 * 120.00094 * 179.97438 * 13 12 10 38 38 H 0.96999 * 120.00038 * 94.99960 * 18 2 1 39 39 H 1.09004 * 109.47468 * 60.00474 * 21 19 18 40 40 H 1.08997 * 109.47733 * 300.00178 * 21 19 18 41 41 H 1.08996 * 109.46925 * 59.99700 * 22 21 19 42 42 H 1.09004 * 109.46804 * 300.00198 * 22 21 19 43 43 H 1.08004 * 126.74797 * 0.05551 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1904 6 6 4.1732 -1.4284 -2.1909 7 8 3.5702 -1.8835 -3.1397 8 6 5.6752 -1.5360 -2.1307 9 16 6.2785 -2.3895 -3.6084 10 6 8.0104 -2.3753 -3.2842 11 1 8.3866 -1.9221 -2.3790 12 6 8.8911 -2.9474 -4.1918 13 7 8.4325 -3.5002 -5.2949 14 14 10.7271 -2.9329 -3.8478 15 1 10.9823 -2.2570 -2.5504 16 1 11.2300 -4.3287 -3.7856 17 1 11.4284 -2.2020 -4.9336 18 7 2.0183 -0.6904 1.1963 19 6 2.1470 -0.0180 2.3572 20 8 1.8581 1.1587 2.4117 21 6 2.6488 -0.7284 3.5878 22 6 2.6998 0.2547 4.7591 23 6 3.2021 -0.4555 5.9895 24 6 2.4684 -1.1788 6.8674 25 7 3.3195 -1.6225 7.7990 26 7 4.5021 -1.2025 7.5166 27 7 4.4777 -0.4985 6.4394 28 1 5.2417 -0.0691 6.0236 29 1 -0.3634 0.5138 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 1.6055 -1.7199 -1.2950 33 1 1.7517 -0.1585 -2.1369 34 1 3.9825 -0.4622 -0.4317 35 1 6.1094 -0.5373 -2.0848 36 1 5.9638 -2.0990 -1.2431 37 1 9.0480 -3.8997 -5.9293 38 1 2.2490 -1.6316 1.1528 39 1 3.6480 -1.1209 3.3988 40 1 1.9760 -1.5502 3.8328 41 1 1.7005 0.6468 4.9480 42 1 3.3724 1.0768 4.5144 43 1 1.4049 -1.3620 6.8238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284201034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:31 Heat of formation + Delta-G solvation = -25.952971 kcal Electronic energy + Delta-G solvation = -25811.156965 eV Core-core repulsion = 21825.022823 eV Total energy + Delta-G solvation = -3986.134142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -44.28623 -41.13030 -40.39548 -37.55042 -35.41607 -34.81207 -34.58067 -34.14380 -32.48100 -30.98775 -30.47005 -27.74282 -26.85772 -26.06270 -23.99065 -22.95405 -22.16541 -21.73896 -21.33030 -19.85637 -19.24288 -18.29485 -17.79462 -17.59488 -17.11504 -16.88686 -16.81439 -16.59558 -16.32364 -15.85301 -15.37615 -15.20574 -14.92143 -14.73360 -14.47875 -14.39409 -14.08065 -13.79402 -13.50723 -13.30181 -13.23241 -13.16136 -12.92015 -12.89371 -12.71758 -12.58886 -12.28706 -12.03665 -11.77792 -11.70813 -11.59758 -11.16336 -10.99117 -10.93092 -10.26872 -10.18565 -10.14271 -10.11564 -8.66312 -8.35327 -6.12712 0.56822 1.26962 1.40944 1.47180 1.54045 1.57481 1.60620 1.67657 1.86337 2.14679 2.26364 2.32929 2.99200 3.31789 3.46252 3.59620 3.70902 3.90472 3.96881 4.04547 4.08496 4.18157 4.27405 4.30673 4.34575 4.51220 4.51411 4.60361 4.66348 4.75741 4.80425 5.02200 5.03672 5.07935 5.22194 5.26530 5.39741 5.42044 5.50475 5.98306 6.19606 6.44735 6.54598 7.06611 7.21738 7.26570 7.44115 8.73920 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009134 B = 0.002200 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.746646 B =12725.898070 C =15397.108347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 H 0.087 0.913 4 C 0.114 3.886 5 N -0.712 5.712 6 C 0.536 3.464 7 O -0.563 6.563 8 C -0.131 4.131 9 S -0.151 6.151 10 C -0.544 4.544 11 H 0.083 0.917 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.256 1.256 16 H -0.275 1.275 17 H -0.275 1.275 18 N -0.720 5.720 19 C 0.519 3.481 20 O -0.575 6.575 21 C -0.133 4.133 22 C -0.025 4.025 23 C 0.009 3.991 24 C -0.055 4.055 25 N -0.306 5.306 26 N -0.116 5.116 27 N -0.376 5.376 28 H 0.461 0.539 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.413 0.587 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.271 0.729 38 H 0.414 0.586 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.887 8.871 21.705 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.038 3.962 3 H 0.105 0.895 4 C -0.010 4.010 5 N -0.366 5.366 6 C 0.322 3.678 7 O -0.441 6.441 8 C -0.282 4.282 9 S 0.076 5.924 10 C -0.692 4.692 11 H 0.101 0.899 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.180 1.180 16 H -0.200 1.200 17 H -0.201 1.201 18 N -0.373 5.373 19 C 0.307 3.693 20 O -0.454 6.454 21 C -0.173 4.173 22 C -0.065 4.065 23 C -0.127 4.127 24 C -0.213 4.213 25 N -0.172 5.172 26 N -0.096 5.096 27 N -0.099 5.099 28 H 0.310 0.690 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.250 0.750 35 H 0.125 0.875 36 H 0.130 0.870 37 H 0.080 0.920 38 H 0.251 0.749 39 H 0.130 0.870 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.108 0.892 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -15.282 8.226 21.253 27.438 hybrid contribution 1.858 0.757 -0.011 2.007 sum -13.423 8.983 21.242 26.685 Atomic orbital electron populations 1.22056 0.93033 1.03302 1.03084 1.21056 0.95532 0.96966 0.82684 0.89540 1.21744 0.79298 1.01816 0.98125 1.45692 1.07746 1.59852 1.23325 1.20001 0.88770 0.76996 0.82077 1.90710 1.70360 1.48420 1.34575 1.23372 0.94889 1.05662 1.04254 1.85585 1.05759 1.74977 1.26036 1.23223 0.91732 1.44176 1.10063 0.89922 1.26112 1.05112 0.93892 0.94080 1.70182 1.37286 1.36606 1.10668 0.84925 0.76072 0.78258 0.78820 1.17992 1.20009 1.20088 1.46110 1.67147 1.14883 1.09167 1.20945 0.76524 0.86782 0.85045 1.90737 1.51528 1.17621 1.85527 1.21689 1.05227 0.99690 0.90719 1.19846 1.03991 0.96150 0.86475 1.22476 0.84493 1.04498 1.01197 1.23989 1.02801 1.01434 0.93062 1.75087 0.96485 1.20743 1.24843 1.78284 1.18016 1.10683 1.02621 1.45235 1.10701 1.35462 1.18519 0.69018 0.92173 0.90579 0.91095 0.90533 0.90554 0.75022 0.87536 0.86999 0.92023 0.74942 0.87044 0.86041 0.87505 0.89169 0.76821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 71.98 0.68 -0.93 16 2 C 0.14 1.67 2.73 44.99 0.12 1.79 16 3 H 0.09 1.26 7.58 -2.38 -0.02 1.24 16 4 C 0.11 1.86 5.23 86.38 0.45 2.32 16 5 N -0.71 -14.31 5.39 -463.05 -2.49 -16.81 16 6 C 0.54 17.51 7.85 87.66 0.69 18.19 16 7 O -0.56 -23.89 15.86 -3.03 -0.05 -23.94 16 8 C -0.13 -4.74 6.16 71.24 0.44 -4.30 16 9 S -0.15 -8.03 20.57 -56.49 -1.16 -9.19 16 10 C -0.54 -30.06 9.50 67.96 0.65 -29.41 16 11 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 12 C 0.01 0.71 5.49 84.86 0.47 1.18 16 13 N -0.91 -54.85 13.22 21.65 0.29 -54.57 16 14 Si 1.00 42.54 29.55 68.60 2.03 44.56 16 15 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 18 N -0.72 -5.98 4.52 -442.53 -2.00 -7.98 16 19 C 0.52 5.08 7.79 87.66 0.68 5.76 16 20 O -0.57 -10.15 15.64 -3.03 -0.05 -10.20 16 21 C -0.13 -0.48 5.68 29.85 0.17 -0.31 16 22 C -0.02 -0.12 5.07 29.85 0.15 0.03 16 23 C 0.01 0.07 6.56 41.35 0.27 0.34 16 24 C -0.05 -0.67 11.99 83.73 1.00 0.34 16 25 N -0.31 -6.15 12.41 -58.25 -0.72 -6.87 16 26 N -0.12 -2.19 13.38 37.02 0.50 -1.69 16 27 N -0.38 -3.90 6.98 -47.79 -0.33 -4.23 16 28 H 0.46 1.66 8.96 -219.96 -1.97 -0.31 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.41 6.04 8.14 -92.71 -0.75 5.29 16 35 H 0.11 3.51 8.14 -2.40 -0.02 3.49 16 36 H 0.11 3.55 8.14 -2.40 -0.02 3.53 16 37 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.41 2.14 8.60 -92.71 -0.80 1.34 16 39 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 40 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.11 0.57 8.10 -2.39 -0.02 0.55 16 42 H 0.09 0.47 8.10 -2.38 -0.02 0.46 16 43 H 0.22 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -85.92 389.32 -0.68 -86.59 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -2.45 Total: 9.31 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 5.78 Total: -5.00 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -4.77 Total: -92.14 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.10 Total: -34.14 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -85.92 -0.68 -86.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.637 kcal (2) G-P(sol) polarization free energy of solvation -85.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds