Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.53004 * 109.46864 * 120.00188 * 2 1 3 5 5 N 1.46507 * 109.46980 * 174.99955 * 4 2 1 6 6 C 1.34775 * 119.99612 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00577 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.99676 * 179.97438 * 6 5 4 9 9 S 1.80994 * 109.46899 * 179.97438 * 8 6 5 10 10 C 1.76210 * 99.99856 * 179.97438 * 9 8 6 11 11 H 1.07997 * 119.99500 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99844 * 179.97438 * 10 9 8 13 13 N 1.31621 * 119.99638 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00014 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.47011 * 90.00208 * 14 12 10 16 16 H 1.48499 * 109.47090 * 209.99913 * 14 12 10 17 17 H 1.48501 * 109.47398 * 330.00112 * 14 12 10 18 18 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 19 19 C 1.34784 * 119.99893 * 85.00288 * 18 2 1 20 20 O 1.21283 * 119.99649 * 0.02562 * 19 18 2 21 21 C 1.50697 * 119.99774 * 179.72962 * 19 18 2 22 22 C 1.53003 * 109.46624 * 180.02562 * 21 19 18 23 23 C 1.50702 * 109.46956 * 179.97438 * 22 21 19 24 24 C 1.35355 * 126.90920 * 274.67950 * 23 22 21 25 25 N 1.33779 * 106.49438 * 179.90381 * 24 23 22 26 26 N 1.28630 * 108.88620 * 0.36812 * 25 24 23 27 27 N 1.28720 * 110.17972 * 359.77053 * 26 25 24 28 28 H 0.97001 * 125.87034 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 30 30 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 32 32 H 1.08996 * 109.47116 * 294.99243 * 4 2 1 33 33 H 1.08992 * 109.47265 * 54.99911 * 4 2 1 34 34 H 0.96995 * 119.99766 * 359.97438 * 5 4 2 35 35 H 1.09000 * 109.46612 * 300.00072 * 8 6 5 36 36 H 1.08998 * 109.47014 * 59.99367 * 8 6 5 37 37 H 0.97004 * 120.00062 * 179.97438 * 13 12 10 38 38 H 0.97005 * 120.00261 * 265.00500 * 18 2 1 39 39 H 1.09001 * 109.46809 * 299.99238 * 21 19 18 40 40 H 1.08993 * 109.47525 * 59.99679 * 21 19 18 41 41 H 1.09001 * 109.46782 * 299.99104 * 22 21 19 42 42 H 1.08993 * 109.47555 * 59.99547 * 22 21 19 43 43 H 1.07998 * 126.75094 * 0.04311 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1729 -1.4293 2.1907 7 8 3.5698 -1.8843 3.1395 8 6 5.6748 -1.5380 2.1301 9 16 6.2780 -2.3912 3.6080 10 6 8.0097 -2.3796 3.2825 11 1 8.3859 -1.9270 2.3770 12 6 8.8903 -2.9514 4.1905 13 7 10.1839 -2.9423 3.9475 14 14 8.2397 -3.7324 5.7576 15 1 7.9508 -5.1682 5.5121 16 1 9.2576 -3.6089 6.8317 17 1 6.9935 -3.0410 6.1748 18 7 2.0183 -0.6906 -1.1961 19 6 2.1471 -0.0183 -2.3572 20 8 1.8591 1.1586 -2.4115 21 6 2.6552 -0.7272 -3.5860 22 6 2.7061 0.2558 -4.7574 23 6 3.2149 -0.4530 -5.9862 24 6 4.5080 -0.6455 -6.3367 25 7 4.4920 -1.3188 -7.4926 26 7 3.2701 -1.5225 -7.8389 27 7 2.4709 -1.0198 -6.9641 28 1 1.5018 -1.0435 -6.9994 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.7516 -0.1584 2.1370 33 1 1.6053 -1.7198 1.2952 34 1 3.9823 -0.4629 0.4317 35 1 5.9627 -2.1008 1.2422 36 1 6.1097 -0.5396 2.0843 37 1 10.7994 -3.3415 4.5822 38 1 2.2490 -1.6319 -1.1526 39 1 3.6556 -1.1151 -3.3941 40 1 1.9867 -1.5521 -3.8322 41 1 1.7059 0.6441 -4.9495 42 1 3.3749 1.0804 -4.5110 43 1 5.3809 -0.3214 -5.7896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284201035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = 5.727903 kcal Electronic energy + Delta-G solvation = -25840.583194 eV Core-core repulsion = 21855.822838 eV Total energy + Delta-G solvation = -3984.760356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.75248 -40.50599 -39.32663 -36.82819 -34.95757 -33.89097 -33.61948 -32.47760 -31.84034 -30.22353 -29.56410 -26.25062 -25.69765 -25.48428 -23.43164 -22.42789 -21.63840 -20.86256 -20.56198 -18.78328 -18.10076 -17.58428 -16.96205 -16.51096 -16.46144 -16.19754 -15.91239 -15.24344 -15.00951 -14.84786 -14.79221 -14.25929 -14.03484 -13.88750 -13.62559 -13.24126 -13.10632 -12.94533 -12.89897 -12.82748 -12.40979 -12.22757 -12.01456 -11.88464 -11.45531 -11.30507 -11.29271 -11.04468 -11.03444 -10.66005 -10.40055 -9.90580 -9.70419 -9.63213 -9.58411 -9.16263 -9.03466 -8.55737 -6.97072 -6.32507 -4.05006 1.05316 2.10906 2.12869 2.23827 2.59913 2.71560 2.86006 3.23469 3.30104 3.46827 3.58304 3.85967 4.11934 4.20205 4.25013 4.29341 4.41488 4.56914 4.63486 4.68414 4.71817 4.82586 4.90589 4.95139 5.06505 5.16366 5.18498 5.24847 5.35742 5.37209 5.46861 5.57416 5.68427 5.69064 5.75065 5.93561 5.98274 6.33672 6.34815 6.96391 7.44820 7.70454 7.90429 7.99967 8.35610 8.38019 9.13440 10.76681 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010658 B = 0.002133 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.514918 B =13121.119576 C =15367.423722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.097 0.903 4 C 0.113 3.887 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.517 6.517 8 C -0.125 4.125 9 S -0.141 6.141 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.879 5.879 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.727 5.727 19 C 0.517 3.483 20 O -0.537 6.537 21 C -0.140 4.140 22 C -0.031 4.031 23 C -0.011 4.011 24 C -0.042 4.042 25 N -0.264 5.264 26 N -0.082 5.082 27 N -0.390 5.390 28 H 0.447 0.553 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.271 0.729 38 H 0.405 0.595 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.260 6.677 -17.859 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.115 0.885 4 C -0.012 4.012 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.392 6.392 8 C -0.275 4.275 9 S 0.085 5.915 10 C -0.670 4.670 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.516 5.516 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 N -0.380 5.380 19 C 0.303 3.697 20 O -0.414 6.414 21 C -0.181 4.181 22 C -0.071 4.071 23 C -0.145 4.145 24 C -0.199 4.199 25 N -0.131 5.131 26 N -0.062 5.062 27 N -0.111 5.111 28 H 0.292 0.708 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.240 0.760 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.124 0.876 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -22.023 5.943 -17.591 28.806 hybrid contribution 0.367 0.348 0.235 0.558 sum -21.656 6.290 -17.356 28.457 Atomic orbital electron populations 1.22102 0.93974 1.02689 1.03166 1.21264 0.94985 0.97915 0.83226 0.88470 1.21628 0.81016 1.01375 0.97171 1.45952 1.06849 1.61919 1.24620 1.20312 0.89497 0.76804 0.81685 1.90711 1.69855 1.46117 1.32475 1.23277 0.93235 1.05601 1.05401 1.84800 1.07062 1.75337 1.24306 1.22303 0.88585 1.44814 1.11272 0.89359 1.24718 0.94111 0.94524 0.97978 1.69933 1.01558 1.43368 1.36696 0.86735 0.80798 0.81201 0.83104 1.19206 1.19911 1.15947 1.46165 1.67620 1.14500 1.09669 1.20550 0.77352 0.87286 0.84502 1.90743 1.49845 1.15850 1.84971 1.21698 1.04402 0.99412 0.92569 1.19857 1.03602 0.96673 0.86995 1.22298 0.92282 1.04408 0.95515 1.23535 0.96854 1.03413 0.96124 1.75153 1.11046 1.14406 1.12482 1.78334 0.95617 1.17856 1.14424 1.45166 1.11675 1.38412 1.15841 0.70759 0.91603 0.92018 0.90993 0.89878 0.90860 0.76571 0.88503 0.88429 0.91893 0.76047 0.87610 0.88729 0.89511 0.87590 0.78983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.48 37.15 0.35 -0.57 16 2 C 0.13 0.85 2.73 -67.93 -0.19 0.66 16 3 H 0.10 0.77 7.58 -51.93 -0.39 0.37 16 4 C 0.11 0.96 5.23 -4.04 -0.02 0.94 16 5 N -0.74 -7.77 5.39 -60.29 -0.32 -8.09 16 6 C 0.53 8.49 7.85 -10.98 -0.09 8.41 16 7 O -0.52 -10.32 15.86 5.56 0.09 -10.24 16 8 C -0.12 -2.24 6.16 36.01 0.22 -2.02 16 9 S -0.14 -3.46 18.55 -107.50 -1.99 -5.45 16 10 C -0.52 -14.68 10.04 30.94 0.31 -14.37 16 11 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 12 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 13 N -0.88 -26.15 13.97 55.49 0.78 -25.37 16 14 Si 0.86 21.38 27.74 -169.99 -4.71 16.67 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 18 N -0.73 -3.80 4.52 -53.81 -0.24 -4.04 16 19 C 0.52 3.13 7.79 -10.98 -0.09 3.04 16 20 O -0.54 -5.20 15.64 5.56 0.09 -5.11 16 21 C -0.14 -0.47 5.68 -27.88 -0.16 -0.63 16 22 C -0.03 -0.12 5.07 -27.88 -0.14 -0.26 16 23 C -0.01 -0.06 6.56 -82.08 -0.54 -0.60 16 24 C -0.04 -0.31 11.99 -17.73 -0.21 -0.52 16 25 N -0.26 -2.80 12.41 30.24 0.38 -2.42 16 26 N -0.08 -0.77 13.38 60.35 0.81 0.03 16 27 N -0.39 -2.13 6.98 33.54 0.23 -1.89 16 28 H 0.45 0.78 8.96 -190.40 -1.71 -0.92 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.40 3.36 8.14 -40.82 -0.33 3.03 16 35 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 36 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 38 H 0.40 1.57 8.60 -40.82 -0.35 1.22 16 39 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.09 0.30 8.10 -51.93 -0.42 -0.12 16 42 H 0.11 0.46 8.10 -51.93 -0.42 0.04 16 43 H 0.19 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 386.63 15.07 5.83 5.83 Total: -1.00 -38.13 386.63 -7.15 -45.28 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -7.43 Total: -1.92 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -0.64 Total: -3.27 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 1.62 Total: -41.79 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.18 Total: -15.35 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.71 Total: 16.67 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.13 -7.15 -45.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.012 kcal (2) G-P(sol) polarization free energy of solvation -38.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds