Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47544 * 2 1 4 4 C 1.53004 * 109.46864 * 120.00188 * 2 1 3 5 5 N 1.46507 * 109.46980 * 174.99955 * 4 2 1 6 6 C 1.34775 * 119.99612 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00577 * 359.97438 * 6 5 4 8 8 C 1.50709 * 119.99676 * 179.97438 * 6 5 4 9 9 S 1.80994 * 109.46899 * 179.97438 * 8 6 5 10 10 C 1.76210 * 99.99856 * 179.97438 * 9 8 6 11 11 H 1.07997 * 119.99500 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99844 * 179.97438 * 10 9 8 13 13 N 1.31621 * 119.99638 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 120.00014 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.47011 * 90.00208 * 14 12 10 16 16 H 1.48499 * 109.47090 * 209.99913 * 14 12 10 17 17 H 1.48501 * 109.47398 * 330.00112 * 14 12 10 18 18 N 1.46499 * 109.47258 * 239.99749 * 2 1 3 19 19 C 1.34784 * 119.99893 * 85.00288 * 18 2 1 20 20 O 1.21283 * 119.99649 * 0.02562 * 19 18 2 21 21 C 1.50697 * 119.99774 * 179.72962 * 19 18 2 22 22 C 1.53003 * 109.46624 * 180.02562 * 21 19 18 23 23 C 1.50702 * 109.46956 * 179.97438 * 22 21 19 24 24 C 1.35355 * 126.90920 * 274.67950 * 23 22 21 25 25 N 1.33779 * 106.49438 * 179.90381 * 24 23 22 26 26 N 1.28630 * 108.88620 * 0.36812 * 25 24 23 27 27 N 1.28720 * 110.17972 * 359.77053 * 26 25 24 28 28 H 0.97001 * 125.87034 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.47025 * 59.99700 * 1 2 3 30 30 H 1.09002 * 109.47544 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47281 * 300.00191 * 1 2 3 32 32 H 1.08996 * 109.47116 * 294.99243 * 4 2 1 33 33 H 1.08992 * 109.47265 * 54.99911 * 4 2 1 34 34 H 0.96995 * 119.99766 * 359.97438 * 5 4 2 35 35 H 1.09000 * 109.46612 * 300.00072 * 8 6 5 36 36 H 1.08998 * 109.47014 * 59.99367 * 8 6 5 37 37 H 0.97004 * 120.00062 * 179.97438 * 13 12 10 38 38 H 0.97005 * 120.00261 * 265.00500 * 18 2 1 39 39 H 1.09001 * 109.46809 * 299.99238 * 21 19 18 40 40 H 1.08993 * 109.47525 * 59.99679 * 21 19 18 41 41 H 1.09001 * 109.46782 * 299.99104 * 22 21 19 42 42 H 1.08993 * 109.47555 * 59.99547 * 22 21 19 43 43 H 1.07998 * 126.75094 * 0.04311 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1729 -1.4293 2.1907 7 8 3.5698 -1.8843 3.1395 8 6 5.6748 -1.5380 2.1301 9 16 6.2780 -2.3912 3.6080 10 6 8.0097 -2.3796 3.2825 11 1 8.3859 -1.9270 2.3770 12 6 8.8903 -2.9514 4.1905 13 7 10.1839 -2.9423 3.9475 14 14 8.2397 -3.7324 5.7576 15 1 7.9508 -5.1682 5.5121 16 1 9.2576 -3.6089 6.8317 17 1 6.9935 -3.0410 6.1748 18 7 2.0183 -0.6906 -1.1961 19 6 2.1471 -0.0183 -2.3572 20 8 1.8591 1.1586 -2.4115 21 6 2.6552 -0.7272 -3.5860 22 6 2.7061 0.2558 -4.7574 23 6 3.2149 -0.4530 -5.9862 24 6 4.5080 -0.6455 -6.3367 25 7 4.4920 -1.3188 -7.4926 26 7 3.2701 -1.5225 -7.8389 27 7 2.4709 -1.0198 -6.9641 28 1 1.5018 -1.0435 -6.9994 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.7516 -0.1584 2.1370 33 1 1.6053 -1.7198 1.2952 34 1 3.9823 -0.4629 0.4317 35 1 5.9627 -2.1008 1.2422 36 1 6.1097 -0.5396 2.0843 37 1 10.7994 -3.3415 4.5822 38 1 2.2490 -1.6319 -1.1526 39 1 3.6556 -1.1151 -3.3941 40 1 1.9867 -1.5521 -3.8322 41 1 1.7059 0.6441 -4.9495 42 1 3.3749 1.0804 -4.5110 43 1 5.3809 -0.3214 -5.7896 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284201035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = -25.200228 kcal Electronic energy + Delta-G solvation = -25841.924338 eV Core-core repulsion = 21855.822838 eV Total energy + Delta-G solvation = -3986.101500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.29002 -41.14030 -40.41852 -37.55844 -35.42108 -34.82672 -34.65108 -34.15254 -32.49211 -31.02976 -30.48774 -27.88038 -26.90888 -26.06983 -24.00151 -22.96207 -22.16599 -21.77152 -21.33558 -19.89358 -19.24929 -18.30796 -17.81577 -17.61122 -17.17504 -17.04297 -16.81362 -16.59911 -16.33729 -15.73401 -15.34634 -15.29259 -15.00441 -14.83383 -14.61539 -14.43752 -14.13567 -13.81940 -13.52120 -13.33276 -13.32260 -13.25417 -12.99176 -12.92271 -12.73292 -12.60901 -12.29397 -12.02732 -11.85291 -11.77946 -11.59517 -11.15882 -11.03101 -10.93375 -10.51898 -10.19101 -10.15930 -10.11244 -8.97760 -8.50245 -6.20751 0.56069 1.00684 1.32462 1.47794 1.53041 1.56762 1.57168 1.67360 1.85818 2.13788 2.25357 2.30639 2.73099 2.88195 3.45903 3.59389 3.70481 3.87499 3.90039 4.03499 4.08978 4.17716 4.24750 4.29629 4.32898 4.49628 4.50389 4.60076 4.66230 4.75202 4.79196 5.01489 5.03796 5.07658 5.21486 5.25097 5.38356 5.50269 5.71981 5.99808 6.13200 6.42038 6.54231 6.95098 7.17506 7.26426 7.43513 8.62051 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010658 B = 0.002133 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.514918 B =13121.119576 C =15367.423722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 H 0.086 0.914 4 C 0.115 3.885 5 N -0.711 5.711 6 C 0.538 3.462 7 O -0.560 6.560 8 C -0.113 4.113 9 S -0.175 6.175 10 C -0.528 4.528 11 H 0.063 0.937 12 C 0.044 3.956 13 N -0.917 5.917 14 Si 0.914 3.086 15 H -0.262 1.262 16 H -0.262 1.262 17 H -0.236 1.236 18 N -0.720 5.720 19 C 0.519 3.481 20 O -0.575 6.575 21 C -0.133 4.133 22 C -0.025 4.025 23 C 0.010 3.990 24 C -0.057 4.057 25 N -0.306 5.306 26 N -0.114 5.114 27 N -0.374 5.374 28 H 0.462 0.538 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.414 0.586 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.276 0.724 38 H 0.414 0.586 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.182 6.715 -17.921 30.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.104 0.896 4 C -0.009 4.009 5 N -0.366 5.366 6 C 0.323 3.677 7 O -0.438 6.438 8 C -0.264 4.264 9 S 0.051 5.949 10 C -0.675 4.675 11 H 0.081 0.919 12 C -0.161 4.161 13 N -0.556 5.556 14 Si 0.737 3.263 15 H -0.187 1.187 16 H -0.186 1.186 17 H -0.160 1.160 18 N -0.373 5.373 19 C 0.307 3.693 20 O -0.454 6.454 21 C -0.174 4.174 22 C -0.064 4.064 23 C -0.125 4.125 24 C -0.215 4.215 25 N -0.173 5.173 26 N -0.094 5.094 27 N -0.097 5.097 28 H 0.311 0.689 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.251 0.749 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.251 0.749 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -23.970 5.976 -17.716 30.400 hybrid contribution 0.868 0.454 0.144 0.990 sum -23.102 6.431 -17.572 29.729 Atomic orbital electron populations 1.22055 0.93069 1.03268 1.03054 1.21071 0.95499 0.97045 0.82755 0.89554 1.21752 0.79134 1.01910 0.98098 1.45688 1.07850 1.59683 1.23333 1.19885 0.88470 0.77132 0.82201 1.90706 1.70223 1.48478 1.34395 1.23279 0.94991 1.05579 1.02520 1.84709 1.04468 1.76853 1.28862 1.22467 0.90887 1.43937 1.10239 0.91916 1.25579 0.94366 0.95160 1.01041 1.70016 1.02746 1.44649 1.38139 0.85863 0.80376 0.80363 0.79746 1.18660 1.18601 1.15962 1.46108 1.67177 1.14897 1.09145 1.20935 0.76487 0.86784 0.85091 1.90740 1.51561 1.17570 1.85530 1.21688 1.05441 0.99375 0.90856 1.19847 1.03818 0.96485 0.86293 1.22434 0.91568 1.03088 0.95421 1.23970 0.98469 1.03408 0.95678 1.75103 1.11907 1.16035 1.14212 1.78264 0.95848 1.19504 1.15771 1.45184 1.12392 1.37110 1.15016 0.68887 0.92335 0.91080 0.90515 0.90329 0.90331 0.74935 0.86579 0.87124 0.91420 0.74910 0.86370 0.86720 0.88830 0.87833 0.77309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 71.98 0.68 -0.74 16 2 C 0.14 1.49 2.73 44.99 0.12 1.61 16 3 H 0.09 1.18 7.58 -2.39 -0.02 1.16 16 4 C 0.12 1.66 5.23 86.38 0.45 2.11 16 5 N -0.71 -13.02 5.39 -463.05 -2.50 -15.52 16 6 C 0.54 16.08 7.85 87.66 0.69 16.77 16 7 O -0.56 -21.56 15.86 -3.02 -0.05 -21.60 16 8 C -0.11 -3.87 6.16 71.24 0.44 -3.43 16 9 S -0.18 -8.46 18.55 -56.49 -1.05 -9.51 16 10 C -0.53 -29.85 10.04 67.96 0.68 -29.17 16 11 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 12 C 0.04 2.53 5.50 84.86 0.47 2.99 16 13 N -0.92 -55.09 13.97 21.65 0.30 -54.79 16 14 Si 0.91 44.06 27.74 68.60 1.90 45.96 16 15 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 17 H -0.24 -11.28 6.74 99.48 0.67 -10.61 16 18 N -0.72 -5.38 4.52 -442.53 -2.00 -7.38 16 19 C 0.52 4.87 7.79 87.65 0.68 5.55 16 20 O -0.57 -9.96 15.64 -3.04 -0.05 -10.01 16 21 C -0.13 -0.46 5.68 29.85 0.17 -0.29 16 22 C -0.02 -0.12 5.07 29.85 0.15 0.03 16 23 C 0.01 0.09 6.56 41.36 0.27 0.36 16 24 C -0.06 -0.78 11.99 83.73 1.00 0.22 16 25 N -0.31 -6.45 12.41 -58.25 -0.72 -7.17 16 26 N -0.11 -2.10 13.38 37.02 0.50 -1.61 16 27 N -0.37 -3.52 6.98 -47.78 -0.33 -3.86 16 28 H 0.46 0.76 8.96 -219.95 -1.97 -1.21 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.41 5.59 8.14 -92.71 -0.75 4.83 16 35 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.11 3.53 8.14 -2.40 -0.02 3.52 16 37 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.41 1.74 8.60 -92.70 -0.80 0.94 16 39 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.09 0.40 8.10 -2.39 -0.02 0.38 16 42 H 0.10 0.66 8.10 -2.39 -0.02 0.64 16 43 H 0.21 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -83.96 386.63 -0.67 -84.63 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -2.49 Total: 4.85 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 5.81 Total: -3.98 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -4.75 Total: -90.34 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.10 Total: -31.61 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.90 Total: 45.96 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.05 Total: -9.51 kcal Total: -83.96 -0.67 -84.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.431 kcal (2) G-P(sol) polarization free energy of solvation -83.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds