Wall clock time and date at job start Sat Apr 11 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 5 5 N 1.46508 * 109.47309 * 185.00046 * 4 2 1 6 6 C 1.34771 * 120.00085 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99966 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99700 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.47099 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99841 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00452 * 0.02562 * 10 9 8 12 12 C 1.38800 * 119.99916 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00290 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99728 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46894 * 90.00542 * 14 12 10 16 16 H 1.48503 * 109.47087 * 209.99993 * 14 12 10 17 17 H 1.48496 * 109.47380 * 330.00363 * 14 12 10 18 18 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 19 19 C 1.34784 * 119.99893 * 274.99901 * 18 2 1 20 20 O 1.21283 * 119.99649 * 0.02562 * 19 18 2 21 21 C 1.50697 * 119.99774 * 179.72962 * 19 18 2 22 22 C 1.53003 * 109.46624 * 180.02562 * 21 19 18 23 23 C 1.50702 * 109.46956 * 179.97438 * 22 21 19 24 24 N 1.33244 * 125.52273 * 269.69118 * 23 22 21 25 25 C 1.30836 * 109.82754 * 179.85475 * 24 23 22 26 26 N 1.34432 * 108.07690 * 0.40158 * 25 24 23 27 27 H 0.96997 * 126.82199 * 179.79219 * 26 25 24 28 28 N 1.30714 * 125.53196 * 89.99376 * 23 22 21 29 29 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 30 30 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 31 31 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47777 * 305.00037 * 4 2 1 33 33 H 1.09004 * 109.47370 * 65.00532 * 4 2 1 34 34 H 0.97006 * 119.99206 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47372 * 300.00031 * 8 6 5 36 36 H 1.08999 * 109.47175 * 60.00157 * 8 6 5 37 37 H 0.96998 * 120.00273 * 180.02562 * 13 12 10 38 38 H 0.97005 * 120.00261 * 95.00113 * 18 2 1 39 39 H 1.09001 * 109.46809 * 299.99238 * 21 19 18 40 40 H 1.08993 * 109.47525 * 59.99679 * 21 19 18 41 41 H 1.09001 * 109.46782 * 299.99104 * 22 21 19 42 42 H 1.08993 * 109.47555 * 59.99547 * 22 21 19 43 43 H 1.08002 * 125.96234 * 180.12271 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.1731 -1.4284 -2.1911 7 8 3.5699 -1.8835 -3.1398 8 6 5.6750 -1.5361 -2.1310 9 16 6.2784 -2.3895 -3.6087 10 6 8.0101 -2.3766 -3.2838 11 1 8.3863 -1.9240 -2.3783 12 6 8.8908 -2.9482 -4.1917 13 7 10.1844 -2.9390 -3.9488 14 14 8.2400 -3.7316 -5.7576 15 1 8.1822 -2.7110 -6.8347 16 1 9.1425 -4.8363 -6.1705 17 1 6.8781 -4.2704 -5.5126 18 7 2.0182 -0.6907 1.1962 19 6 2.1469 -0.0183 2.3572 20 8 1.8581 1.1584 2.4117 21 6 2.6434 -0.7302 3.5891 22 6 2.6955 0.2531 4.7602 23 6 3.1914 -0.4589 5.9923 24 7 2.4253 -1.0774 6.8901 25 6 3.1731 -1.5928 7.8319 26 7 4.4553 -1.3003 7.5532 27 1 5.2347 -1.5483 8.0746 28 7 4.4422 -0.5652 6.3566 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1584 -2.1370 34 1 3.9824 -0.4628 -0.4315 35 1 6.1094 -0.5374 -2.0850 36 1 5.9637 -2.0990 -1.2434 37 1 10.7999 -3.3381 -4.5835 38 1 2.2490 -1.6319 1.1526 39 1 1.9668 -1.5493 3.8328 40 1 3.6414 -1.1266 3.4024 41 1 3.3719 1.0725 4.5167 42 1 1.6973 0.6491 4.9468 43 1 2.8214 -2.1514 8.6867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284201618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:39 Heat of formation + Delta-G solvation = -0.383859 kcal Electronic energy + Delta-G solvation = -25774.583266 eV Core-core repulsion = 21789.557884 eV Total energy + Delta-G solvation = -3985.025382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.54577 -40.32740 -39.23009 -36.67653 -34.64132 -33.77695 -32.48814 -32.45229 -31.71320 -30.67140 -29.51710 -26.20795 -25.75242 -25.48361 -23.20873 -21.86474 -20.82901 -20.49762 -20.39717 -18.79070 -18.03351 -17.47462 -16.81808 -16.42041 -16.15864 -15.97172 -15.71359 -15.36909 -15.13723 -14.97166 -14.37942 -14.11549 -13.77481 -13.69795 -13.36565 -13.10984 -12.95919 -12.81478 -12.71273 -12.63970 -12.56549 -12.25956 -11.94520 -11.56394 -11.33273 -11.27591 -11.02211 -10.62578 -10.57678 -10.49037 -10.27150 -10.02234 -9.87799 -9.61523 -9.44754 -9.08503 -9.00579 -8.52358 -6.93831 -6.30234 -4.02262 1.14919 2.20277 2.32907 2.37801 2.70684 2.83706 2.93183 3.28257 3.32847 3.48963 3.62405 3.68042 4.18795 4.31357 4.31778 4.42242 4.54164 4.70017 4.76096 4.77065 4.83321 4.95706 5.08754 5.15683 5.23244 5.29602 5.38066 5.52234 5.57038 5.60228 5.68989 5.74068 5.76431 5.87853 5.97886 5.98858 6.14053 6.43262 6.55134 7.13510 7.52694 7.61932 7.89103 7.92773 8.40430 8.42538 9.15809 10.78984 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010595 B = 0.002130 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.227331 B =13140.910724 C =15391.005454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.097 0.903 4 C 0.113 3.887 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.518 6.518 8 C -0.125 4.125 9 S -0.141 6.141 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.728 5.728 19 C 0.520 3.480 20 O -0.537 6.537 21 C -0.135 4.135 22 C -0.010 4.010 23 C 0.228 3.772 24 N -0.541 5.541 25 C 0.261 3.739 26 N -0.485 5.485 27 H 0.443 0.557 28 N -0.309 5.309 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.271 0.729 38 H 0.404 0.596 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.249 3.304 23.524 29.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.115 0.885 4 C -0.012 4.012 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.393 6.393 8 C -0.275 4.275 9 S 0.085 5.915 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.114 4.114 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 N -0.381 5.381 19 C 0.306 3.694 20 O -0.413 6.413 21 C -0.176 4.176 22 C -0.050 4.050 23 C -0.054 4.054 24 N -0.270 5.270 25 C -0.038 4.038 26 N -0.203 5.203 27 H 0.288 0.712 28 N -0.138 5.138 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.235 0.765 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.239 0.761 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.119 0.881 43 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -19.086 3.657 21.464 28.954 hybrid contribution 1.620 -0.548 1.459 2.248 sum -17.465 3.108 22.923 28.986 Atomic orbital electron populations 1.22102 0.93974 1.02694 1.03154 1.21246 0.95008 0.97897 0.83229 0.88522 1.21634 0.80921 1.01380 0.97229 1.45960 1.06926 1.61836 1.24553 1.20290 0.89460 0.76833 0.81714 1.90707 1.69857 1.46172 1.32532 1.23280 0.93334 1.05554 1.05349 1.84782 1.07001 1.74541 1.25170 1.22314 0.88603 1.44709 1.11293 0.89384 1.24720 0.94108 0.94536 0.97989 1.69935 1.01542 1.43505 1.36681 0.86729 0.81266 0.80218 0.83593 1.19191 1.19948 1.15938 1.46146 1.67846 1.14433 1.09666 1.20529 0.77162 0.87257 0.84418 1.90730 1.49667 1.15931 1.85005 1.21590 1.04064 0.99673 0.92302 1.19637 1.03606 0.96022 0.85737 1.24299 0.86743 0.97142 0.97257 1.70450 1.34905 1.17060 1.04561 1.26151 0.81282 0.97189 0.99186 1.48172 1.09594 1.42408 1.20100 0.71156 1.78085 1.20988 1.16460 0.98290 0.91476 0.91101 0.92021 0.90863 0.89922 0.76531 0.88473 0.88488 0.91928 0.76122 0.88172 0.88260 0.88496 0.88142 0.76065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 9.48 37.16 0.35 -0.79 16 2 C 0.13 1.04 2.73 -67.93 -0.19 0.86 16 3 H 0.10 0.90 7.58 -51.93 -0.39 0.51 16 4 C 0.11 1.09 5.23 -4.04 -0.02 1.07 16 5 N -0.74 -8.61 5.39 -60.29 -0.32 -8.94 16 6 C 0.53 8.97 7.85 -10.99 -0.09 8.89 16 7 O -0.52 -10.74 15.86 5.56 0.09 -10.65 16 8 C -0.12 -2.35 6.16 36.01 0.22 -2.13 16 9 S -0.14 -3.54 18.55 -107.50 -1.99 -5.53 16 10 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 11 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 12 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 13 N -0.88 -26.49 13.97 55.49 0.78 -25.71 16 14 Si 0.86 21.68 27.74 -169.99 -4.71 16.96 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 17 H -0.24 -5.93 6.74 56.52 0.38 -5.54 16 18 N -0.73 -5.22 4.52 -53.81 -0.24 -5.46 16 19 C 0.52 4.49 7.79 -10.98 -0.09 4.41 16 20 O -0.54 -6.49 15.65 5.56 0.09 -6.41 16 21 C -0.14 -0.93 5.68 -27.88 -0.16 -1.09 16 22 C -0.01 -0.08 5.13 -27.88 -0.14 -0.22 16 23 C 0.23 2.13 7.39 -156.85 -1.16 0.97 16 24 N -0.54 -4.73 11.19 -11.97 -0.13 -4.86 16 25 C 0.26 1.32 13.13 -90.65 -1.19 0.13 16 26 N -0.48 -2.71 7.45 29.53 0.22 -2.49 16 27 H 0.44 0.91 8.96 -182.34 -1.63 -0.72 16 28 N -0.31 -2.96 12.80 32.42 0.41 -2.54 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.40 3.91 8.14 -40.82 -0.33 3.58 16 35 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 36 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 37 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.40 2.31 8.60 -40.82 -0.35 1.96 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 42 H 0.10 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.22 -0.02 8.06 -52.49 -0.42 -0.44 16 LS Contribution 387.33 15.07 5.84 5.84 Total: -1.00 -39.17 387.33 -9.59 -48.76 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.36 Total: 0.89 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.24 Total: 0.14 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.71 Total: -50.00 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.18 Total: -17.06 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.96 kcal Atomic # 16 Polarization: -3.54 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.17 -9.59 -48.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.376 kcal (2) G-P(sol) polarization free energy of solvation -39.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds