Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 5 5 N 1.46508 * 109.47309 * 185.00046 * 4 2 1 6 6 C 1.34771 * 120.00085 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99966 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99700 * 179.97438 * 6 5 4 9 9 S 1.81003 * 109.47099 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99841 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00452 * 0.02562 * 10 9 8 12 12 C 1.38800 * 119.99916 * 180.02562 * 10 9 8 13 13 N 1.31625 * 120.00290 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99728 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46894 * 90.00542 * 14 12 10 16 16 H 1.48503 * 109.47087 * 209.99993 * 14 12 10 17 17 H 1.48496 * 109.47380 * 330.00363 * 14 12 10 18 18 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 19 19 C 1.34784 * 119.99893 * 274.99901 * 18 2 1 20 20 O 1.21283 * 119.99649 * 0.02562 * 19 18 2 21 21 C 1.50697 * 119.99774 * 179.72962 * 19 18 2 22 22 C 1.53003 * 109.46624 * 180.02562 * 21 19 18 23 23 C 1.50702 * 109.46956 * 179.97438 * 22 21 19 24 24 N 1.33244 * 125.52273 * 269.69118 * 23 22 21 25 25 C 1.30836 * 109.82754 * 179.85475 * 24 23 22 26 26 N 1.34432 * 108.07690 * 0.40158 * 25 24 23 27 27 H 0.96997 * 126.82199 * 179.79219 * 26 25 24 28 28 N 1.30714 * 125.53196 * 89.99376 * 23 22 21 29 29 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 30 30 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 31 31 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47777 * 305.00037 * 4 2 1 33 33 H 1.09004 * 109.47370 * 65.00532 * 4 2 1 34 34 H 0.97006 * 119.99206 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.47372 * 300.00031 * 8 6 5 36 36 H 1.08999 * 109.47175 * 60.00157 * 8 6 5 37 37 H 0.96998 * 120.00273 * 180.02562 * 13 12 10 38 38 H 0.97005 * 120.00261 * 95.00113 * 18 2 1 39 39 H 1.09001 * 109.46809 * 299.99238 * 21 19 18 40 40 H 1.08993 * 109.47525 * 59.99679 * 21 19 18 41 41 H 1.09001 * 109.46782 * 299.99104 * 22 21 19 42 42 H 1.08993 * 109.47555 * 59.99547 * 22 21 19 43 43 H 1.08002 * 125.96234 * 180.12271 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1905 6 6 4.1731 -1.4284 -2.1911 7 8 3.5699 -1.8835 -3.1398 8 6 5.6750 -1.5361 -2.1310 9 16 6.2784 -2.3895 -3.6087 10 6 8.0101 -2.3766 -3.2838 11 1 8.3863 -1.9240 -2.3783 12 6 8.8908 -2.9482 -4.1917 13 7 10.1844 -2.9390 -3.9488 14 14 8.2400 -3.7316 -5.7576 15 1 8.1822 -2.7110 -6.8347 16 1 9.1425 -4.8363 -6.1705 17 1 6.8781 -4.2704 -5.5126 18 7 2.0182 -0.6907 1.1962 19 6 2.1469 -0.0183 2.3572 20 8 1.8581 1.1584 2.4117 21 6 2.6434 -0.7302 3.5891 22 6 2.6955 0.2531 4.7602 23 6 3.1914 -0.4589 5.9923 24 7 2.4253 -1.0774 6.8901 25 6 3.1731 -1.5928 7.8319 26 7 4.4553 -1.3003 7.5532 27 1 5.2347 -1.5483 8.0746 28 7 4.4422 -0.5652 6.3566 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1584 -2.1370 34 1 3.9824 -0.4628 -0.4315 35 1 6.1094 -0.5374 -2.0850 36 1 5.9637 -2.0990 -1.2434 37 1 10.7999 -3.3381 -4.5835 38 1 2.2490 -1.6319 1.1526 39 1 1.9668 -1.5493 3.8328 40 1 3.6414 -1.1266 3.4024 41 1 3.3719 1.0725 4.5167 42 1 1.6973 0.6491 4.9468 43 1 2.8214 -2.1514 8.6867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284201618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = -30.363226 kcal Electronic energy + Delta-G solvation = -25775.883268 eV Core-core repulsion = 21789.557884 eV Total energy + Delta-G solvation = -3986.325385 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.06106 -41.15281 -40.42941 -37.55696 -35.25270 -34.83692 -34.66419 -33.05959 -32.44388 -31.37906 -30.75037 -27.89554 -26.94970 -26.36256 -23.66930 -22.57057 -21.78564 -21.49928 -21.01424 -19.90464 -19.24603 -18.34419 -17.83732 -17.62340 -17.13936 -16.93042 -16.71950 -16.51890 -16.23231 -15.90042 -15.73049 -15.08883 -15.00887 -14.81831 -14.49924 -14.33130 -13.99861 -13.71827 -13.49776 -13.35363 -13.28589 -13.23326 -13.09592 -13.00141 -12.91135 -12.62336 -12.16948 -12.02257 -11.85704 -11.17085 -11.12520 -11.05382 -11.04139 -10.95266 -10.64311 -10.53770 -10.19653 -10.13986 -8.99185 -8.51438 -6.22182 0.66340 0.99054 1.32091 1.46881 1.55411 1.55944 1.64054 1.78618 1.86766 2.13709 2.24647 2.29905 2.71651 2.86818 3.21371 3.57970 3.67848 3.82083 3.86333 4.06869 4.10950 4.20636 4.23248 4.27723 4.34908 4.47520 4.58180 4.61937 4.74549 4.79614 4.92906 5.00113 5.02458 5.25103 5.25887 5.38323 5.39048 5.49595 5.70663 6.11630 6.26395 6.39973 6.51435 6.93625 7.11151 7.15561 7.23477 8.60986 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010595 B = 0.002130 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.227331 B =13140.910724 C =15391.005454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.086 0.914 4 C 0.116 3.884 5 N -0.713 5.713 6 C 0.538 3.462 7 O -0.559 6.559 8 C -0.114 4.114 9 S -0.172 6.172 10 C -0.529 4.529 11 H 0.061 0.939 12 C 0.044 3.956 13 N -0.918 5.918 14 Si 0.916 3.084 15 H -0.263 1.263 16 H -0.260 1.260 17 H -0.235 1.235 18 N -0.718 5.718 19 C 0.523 3.477 20 O -0.573 6.573 21 C -0.123 4.123 22 C -0.007 4.007 23 C 0.219 3.781 24 N -0.577 5.577 25 C 0.276 3.724 26 N -0.478 5.478 27 H 0.457 0.543 28 N -0.348 5.348 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.413 0.587 35 H 0.109 0.891 36 H 0.115 0.885 37 H 0.277 0.723 38 H 0.414 0.586 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.745 2.381 24.540 31.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.035 3.965 3 H 0.104 0.896 4 C -0.008 4.008 5 N -0.367 5.367 6 C 0.324 3.676 7 O -0.437 6.437 8 C -0.265 4.265 9 S 0.054 5.946 10 C -0.677 4.677 11 H 0.079 0.921 12 C -0.162 4.162 13 N -0.556 5.556 14 Si 0.738 3.262 15 H -0.188 1.188 16 H -0.184 1.184 17 H -0.159 1.159 18 N -0.372 5.372 19 C 0.310 3.690 20 O -0.453 6.453 21 C -0.164 4.164 22 C -0.047 4.047 23 C -0.064 4.064 24 N -0.306 5.306 25 C -0.022 4.022 26 N -0.197 5.197 27 H 0.306 0.694 28 N -0.178 5.178 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.249 0.751 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.251 0.749 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -20.566 2.727 22.537 30.632 hybrid contribution 2.039 -0.194 1.360 2.459 sum -18.527 2.533 23.897 30.344 Atomic orbital electron populations 1.22056 0.92908 1.03380 1.03084 1.21110 0.95665 0.97040 0.82651 0.89628 1.21759 0.79050 1.01997 0.97979 1.45724 1.07936 1.59703 1.23306 1.19863 0.88445 0.77140 0.82194 1.90701 1.70189 1.48428 1.34339 1.23283 0.95053 1.05534 1.02590 1.84669 1.04420 1.76066 1.29398 1.22469 0.90907 1.44023 1.10295 0.92079 1.25595 0.94357 0.95120 1.01088 1.70017 1.02741 1.44682 1.38136 0.85848 0.80849 0.79765 0.79785 1.18769 1.18402 1.15854 1.46065 1.67204 1.14829 1.09058 1.20773 0.76445 0.86748 0.85006 1.90722 1.51395 1.17596 1.85557 1.21510 1.04714 0.99354 0.90862 1.19550 1.02772 0.96055 0.86331 1.24367 0.86909 0.97437 0.97649 1.70439 1.36050 1.18469 1.05655 1.27077 0.80517 0.95506 0.99111 1.48123 1.10692 1.41712 1.19189 0.69423 1.77982 1.21441 1.18080 1.00296 0.92515 0.90227 0.90947 0.90155 0.90044 0.75074 0.87252 0.86726 0.91383 0.74911 0.86747 0.87437 0.89690 0.88888 0.71271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.48 71.98 0.68 -1.24 16 2 C 0.14 1.98 2.73 44.99 0.12 2.10 16 3 H 0.09 1.48 7.58 -2.39 -0.02 1.46 16 4 C 0.12 1.97 5.23 86.38 0.45 2.43 16 5 N -0.71 -15.00 5.39 -463.05 -2.50 -17.50 16 6 C 0.54 17.22 7.85 87.66 0.69 17.91 16 7 O -0.56 -22.39 15.86 -3.03 -0.05 -22.44 16 8 C -0.11 -4.13 6.16 71.24 0.44 -3.69 16 9 S -0.17 -8.52 18.55 -56.49 -1.05 -9.57 16 10 C -0.53 -30.59 10.04 67.95 0.68 -29.91 16 11 H 0.06 3.73 8.03 -2.91 -0.02 3.71 16 12 C 0.04 2.55 5.50 84.86 0.47 3.02 16 13 N -0.92 -55.79 13.97 21.65 0.30 -55.49 16 14 Si 0.92 44.66 27.74 68.60 1.90 46.57 16 15 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.23 -11.35 6.74 99.48 0.67 -10.68 16 18 N -0.72 -8.91 4.52 -442.54 -2.00 -10.91 16 19 C 0.52 8.48 7.79 87.65 0.68 9.16 16 20 O -0.57 -13.73 15.65 -3.04 -0.05 -13.78 16 21 C -0.12 -1.58 5.68 29.85 0.17 -1.41 16 22 C -0.01 -0.11 5.13 29.85 0.15 0.04 16 23 C 0.22 4.01 7.39 138.63 1.03 5.04 16 24 N -0.58 -9.39 11.19 -191.79 -2.15 -11.54 16 25 C 0.28 2.16 13.13 180.36 2.37 4.52 16 26 N -0.48 -4.61 7.45 -60.48 -0.45 -5.06 16 27 H 0.46 1.10 8.96 -213.10 -1.91 -0.81 16 28 N -0.35 -6.49 12.80 -51.33 -0.66 -7.14 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.41 6.99 8.14 -92.70 -0.75 6.23 16 35 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 36 H 0.11 3.78 8.14 -2.40 -0.02 3.76 16 37 H 0.28 15.55 8.31 -92.71 -0.77 14.77 16 38 H 0.41 3.65 8.60 -92.70 -0.80 2.85 16 39 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.08 1.58 8.10 -2.39 -0.02 1.56 16 42 H 0.09 1.65 8.10 -2.39 -0.02 1.63 16 43 H 0.27 -1.08 8.06 -2.91 -0.02 -1.11 16 Total: -1.00 -86.07 387.33 -1.18 -87.25 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -2.43 Total: 11.63 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 7.93 Total: 7.98 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -7.44 Total: -107.63 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.10 Total: -36.22 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.90 Total: 46.57 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.05 Total: -9.57 kcal Total: -86.07 -1.18 -87.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.889 kcal (2) G-P(sol) polarization free energy of solvation -86.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds