Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 N 1.46500 * 109.47226 * 184.99495 * 4 2 1 6 6 C 1.34776 * 119.99923 * 180.02562 * 5 4 2 7 7 O 1.21272 * 120.00513 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99846 * 180.02562 * 6 5 4 9 9 S 1.80997 * 109.47088 * 180.02562 * 8 6 5 10 10 C 1.76203 * 99.99721 * 180.02562 * 9 8 6 11 11 H 1.07993 * 120.00610 * 359.97438 * 10 9 8 12 12 C 1.38804 * 119.99651 * 180.02562 * 10 9 8 13 13 N 1.31631 * 120.00083 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00032 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47059 * 59.99247 * 14 12 10 16 16 H 1.48499 * 109.47347 * 179.97438 * 14 12 10 17 17 H 1.48509 * 109.46921 * 299.99860 * 14 12 10 18 18 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 19 19 C 1.34777 * 119.99828 * 274.72131 * 18 2 1 20 20 O 1.21693 * 120.00014 * 0.28042 * 19 18 2 21 21 C 1.46777 * 120.00003 * 180.27862 * 19 18 2 22 22 C 1.41476 * 126.51776 * 359.68620 * 21 19 18 23 23 N 1.30291 * 108.19047 * 179.85248 * 22 21 19 24 24 N 1.39894 * 109.22922 * 0.41646 * 23 22 21 25 25 C 1.46501 * 125.74434 * 179.75318 * 24 23 22 26 26 C 1.34847 * 108.50346 * 359.73396 * 24 23 22 27 27 N 1.38012 * 126.43931 * 180.02562 * 26 24 23 28 28 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 30 30 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 31 31 H 1.08995 * 109.47415 * 304.99804 * 4 2 1 32 32 H 1.09008 * 109.47087 * 65.00143 * 4 2 1 33 33 H 0.96998 * 120.00120 * 0.02562 * 5 4 2 34 34 H 1.08997 * 109.47068 * 300.00700 * 8 6 5 35 35 H 1.09008 * 109.46877 * 60.00083 * 8 6 5 36 36 H 0.97001 * 119.99726 * 180.02562 * 13 12 10 37 37 H 0.97001 * 120.00384 * 95.00578 * 18 2 1 38 38 H 1.08003 * 125.90657 * 0.02772 * 22 21 19 39 39 H 1.09002 * 109.47099 * 269.97352 * 25 24 23 40 40 H 1.08995 * 109.47032 * 29.97620 * 25 24 23 41 41 H 1.09001 * 109.46713 * 149.97907 * 25 24 23 42 42 H 0.97002 * 119.99854 * 179.97438 * 27 26 24 43 43 H 0.96995 * 120.00551 * 359.96795 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8263 -1.1906 6 6 4.1730 -1.4282 -2.1912 7 8 3.5701 -1.8825 -3.1403 8 6 5.6749 -1.5368 -2.1307 9 16 6.2784 -2.3886 -3.6093 10 6 8.0100 -2.3771 -3.2836 11 1 8.3862 -1.9252 -2.3778 12 6 8.8907 -2.9479 -4.1920 13 7 8.4323 -3.4983 -5.2963 14 14 10.7265 -2.9364 -3.8465 15 1 10.9963 -3.6630 -2.5798 16 1 11.4443 -3.6037 -4.9621 17 1 11.1980 -1.5336 -3.7226 18 7 2.0183 -0.6906 1.1962 19 6 2.1523 -0.0169 2.3557 20 8 1.8629 1.1639 2.4104 21 6 2.6473 -0.7073 3.5526 22 6 3.0163 -2.0699 3.6465 23 7 3.4058 -2.3026 4.8678 24 7 3.3017 -1.1257 5.6168 25 6 3.6406 -0.9808 7.0347 26 6 2.8374 -0.1470 4.8137 27 7 2.5964 1.1634 5.1735 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.6054 -1.7198 -1.2951 32 1 1.7516 -0.1583 -2.1370 33 1 3.9824 -0.4627 -0.4317 34 1 6.1097 -0.5384 -2.0839 35 1 5.9629 -2.1004 -1.2432 36 1 9.0478 -3.8975 -5.9309 37 1 2.2491 -1.6318 1.1526 38 1 2.9837 -2.7917 2.8437 39 1 2.7605 -1.1924 7.6421 40 1 4.4360 -1.6803 7.2915 41 1 3.9772 0.0382 7.2255 42 1 2.2608 1.7930 4.5163 43 1 2.7625 1.4550 6.0836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284201816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = -32.724734 kcal Electronic energy + Delta-G solvation = -26459.219731 eV Core-core repulsion = 22472.791944 eV Total energy + Delta-G solvation = -3986.427787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31628 -40.83448 -40.02476 -37.33313 -35.89963 -34.69297 -34.55754 -34.01893 -32.24314 -30.79048 -29.51231 -27.84876 -27.71653 -26.75323 -24.03205 -22.49038 -21.71423 -21.46998 -21.16333 -19.83889 -19.04421 -18.04495 -17.70513 -17.51485 -17.11041 -16.86304 -16.77357 -16.71789 -16.30228 -15.85018 -15.63242 -15.42253 -14.88726 -14.75149 -14.49590 -14.24921 -14.11013 -13.77746 -13.73792 -13.50119 -13.40210 -13.19633 -13.15174 -12.87975 -12.85375 -12.60064 -12.25141 -11.99429 -11.87103 -11.72079 -11.11539 -10.95104 -10.82490 -10.26042 -10.15147 -10.10241 -9.92561 -8.85531 -8.63965 -8.33000 -6.10434 0.84064 1.26739 1.28353 1.30922 1.44571 1.47782 1.57798 1.64311 2.22659 2.29545 2.42673 2.59923 2.77580 3.00925 3.34180 3.55283 3.66295 4.00155 4.04974 4.13071 4.18796 4.31891 4.35140 4.38076 4.50886 4.54234 4.57196 4.65966 4.67564 4.79965 4.84747 5.07884 5.29513 5.39991 5.43250 5.44677 5.54104 5.65464 6.21238 6.28355 6.48011 6.51247 6.64813 6.92187 7.08340 7.24806 7.40442 8.75844 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011056 B = 0.002423 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.917881 B =11555.315777 C =13481.208837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.087 0.913 4 C 0.115 3.885 5 N -0.712 5.712 6 C 0.537 3.463 7 O -0.562 6.562 8 C -0.132 4.132 9 S -0.147 6.147 10 C -0.547 4.547 11 H 0.081 0.919 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.997 3.003 15 H -0.262 1.262 16 H -0.279 1.279 17 H -0.263 1.263 18 N -0.717 5.717 19 C 0.608 3.392 20 O -0.594 6.594 21 C -0.397 4.397 22 C 0.114 3.886 23 N -0.332 5.332 24 N -0.403 5.403 25 C 0.090 3.910 26 C 0.430 3.570 27 N -0.817 5.817 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.412 0.588 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.271 0.729 37 H 0.409 0.591 38 H 0.209 0.791 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.428 0.572 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.530 9.506 27.429 32.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.105 0.895 4 C -0.009 4.009 5 N -0.366 5.366 6 C 0.323 3.677 7 O -0.440 6.440 8 C -0.283 4.283 9 S 0.081 5.919 10 C -0.695 4.695 11 H 0.099 0.901 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.818 3.182 15 H -0.187 1.187 16 H -0.204 1.204 17 H -0.188 1.188 18 N -0.368 5.368 19 C 0.399 3.601 20 O -0.477 6.477 21 C -0.417 4.417 22 C -0.076 4.076 23 N -0.151 5.151 24 N -0.192 5.192 25 C -0.050 4.050 26 C 0.193 3.807 27 N -0.368 5.368 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.248 0.752 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.245 0.755 38 H 0.225 0.775 39 H 0.107 0.893 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.264 0.736 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -15.242 8.596 26.685 31.910 hybrid contribution 1.657 0.992 0.789 2.086 sum -13.585 9.588 27.474 32.113 Atomic orbital electron populations 1.22052 0.93082 1.03207 1.02961 1.21052 0.95481 0.96954 0.82362 0.89511 1.21752 0.79244 1.01883 0.98002 1.45726 1.07831 1.59806 1.23260 1.19958 0.88704 0.77000 0.82068 1.90697 1.70319 1.48466 1.34489 1.23383 0.95035 1.05598 1.04269 1.85520 1.05627 1.75091 1.25700 1.23170 0.91869 1.44469 1.10017 0.90082 1.26105 1.05111 0.93842 0.94035 1.70172 1.37426 1.36543 1.10535 0.85031 0.75885 0.79014 0.78233 1.18679 1.20362 1.18789 1.45690 1.67883 1.14397 1.08828 1.17031 0.75547 0.85193 0.82286 1.90660 1.54575 1.16928 1.85563 1.19343 1.32053 0.96212 0.94046 1.24161 0.93539 0.94764 0.95183 1.77106 1.27989 1.04380 1.05592 1.48466 1.54340 1.05497 1.10868 1.22183 1.03465 1.05243 0.74097 1.18225 0.89357 0.83722 0.89440 1.41768 1.72739 1.05506 1.16782 0.91235 0.92543 0.90211 0.90433 0.90178 0.75168 0.87692 0.87205 0.91995 0.75481 0.77481 0.89324 0.88430 0.87526 0.73589 0.75399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.49 71.98 0.68 -1.51 16 2 C 0.15 2.38 2.74 44.99 0.12 2.51 16 3 H 0.09 1.63 7.57 -2.39 -0.02 1.61 16 4 C 0.12 2.27 5.23 86.38 0.45 2.72 16 5 N -0.71 -17.01 5.39 -463.07 -2.49 -19.51 16 6 C 0.54 19.09 7.85 87.66 0.69 19.77 16 7 O -0.56 -25.05 15.86 -3.00 -0.05 -25.09 16 8 C -0.13 -5.16 6.16 71.24 0.44 -4.73 16 9 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 10 C -0.55 -31.30 9.50 67.96 0.65 -30.65 16 11 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 12 C 0.01 0.79 5.49 84.86 0.47 1.26 16 13 N -0.91 -55.94 13.22 21.65 0.29 -55.66 16 14 Si 1.00 43.72 29.55 68.60 2.03 45.74 16 15 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 16 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 17 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 18 N -0.72 -11.30 4.51 -446.40 -2.01 -13.31 16 19 C 0.61 12.17 7.76 86.48 0.67 12.84 16 20 O -0.59 -14.55 14.80 -4.33 -0.06 -14.61 16 21 C -0.40 -7.52 6.15 -19.99 -0.12 -7.64 16 22 C 0.11 1.99 11.49 85.72 0.99 2.98 16 23 N -0.33 -6.64 12.47 -56.23 -0.70 -7.34 16 24 N -0.40 -6.25 4.00 -365.31 -1.46 -7.71 16 25 C 0.09 0.56 11.25 127.77 1.44 2.00 16 26 C 0.43 7.11 7.98 132.69 1.06 8.17 16 27 N -0.82 -8.94 9.02 -54.58 -0.49 -9.43 16 28 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.41 8.13 8.14 -92.71 -0.75 7.37 16 34 H 0.10 3.79 8.14 -2.40 -0.02 3.77 16 35 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.41 5.26 7.55 -92.71 -0.70 4.56 16 38 H 0.21 2.39 7.50 -2.91 -0.02 2.37 16 39 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.11 0.08 7.46 -2.39 -0.02 0.06 16 42 H 0.43 5.77 7.01 -92.71 -0.65 5.12 16 43 H 0.41 1.63 8.04 -92.71 -0.75 0.89 16 Total: -1.00 -84.33 384.46 -0.35 -84.68 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -1.76 Total: 23.76 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 7.53 Total: 7.73 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -6.87 Total: -112.96 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.11 Total: -39.70 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -84.33 -0.35 -84.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.955 kcal (2) G-P(sol) polarization free energy of solvation -84.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds