Wall clock time and date at job start Sat Apr 11 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 N 1.46498 * 109.47113 * 174.99658 * 4 2 1 6 6 C 1.34781 * 120.00367 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99659 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00106 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.46976 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99942 * 180.02562 * 9 8 6 11 11 H 1.07993 * 119.99896 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99687 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00004 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99851 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47037 * 60.00093 * 14 12 10 16 16 H 1.48498 * 109.47283 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46971 * 300.00610 * 14 12 10 18 18 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 19 19 C 1.34770 * 119.99955 * 84.99585 * 18 2 1 20 20 O 1.21694 * 120.00226 * 0.02562 * 19 18 2 21 21 C 1.46775 * 120.00052 * 180.02562 * 19 18 2 22 22 C 1.41483 * 126.51678 * 359.68687 * 21 19 18 23 23 N 1.30288 * 108.18980 * 179.85794 * 22 21 19 24 24 N 1.39898 * 109.23052 * 0.41261 * 23 22 21 25 25 C 1.46500 * 125.74705 * 179.75923 * 24 23 22 26 26 C 1.34845 * 108.50437 * 359.73281 * 24 23 22 27 27 N 1.38011 * 126.44316 * 180.02562 * 26 24 23 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 32 32 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 33 33 H 0.97004 * 120.00154 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.46985 * 300.00288 * 8 6 5 35 35 H 1.08998 * 109.46839 * 60.00494 * 8 6 5 36 36 H 0.96999 * 119.99473 * 180.02562 * 13 12 10 37 37 H 0.96997 * 120.00110 * 265.00363 * 18 2 1 38 38 H 1.07997 * 125.90813 * 0.02562 * 22 21 19 39 39 H 1.08997 * 109.47443 * 269.97613 * 25 24 23 40 40 H 1.09004 * 109.46976 * 29.97640 * 25 24 23 41 41 H 1.09003 * 109.47393 * 149.97135 * 25 24 23 42 42 H 0.96997 * 120.00238 * 179.97438 * 27 26 24 43 43 H 0.97004 * 120.00061 * 359.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1732 -1.4283 2.1911 7 8 3.5701 -1.8833 3.1399 8 6 5.6751 -1.5360 2.1309 9 16 6.2785 -2.3894 3.6087 10 6 8.0104 -2.3752 3.2845 11 1 8.3866 -1.9214 2.3796 12 6 8.8911 -2.9464 4.1926 13 7 8.4324 -3.4990 5.2958 14 14 10.7271 -2.9320 3.8486 15 1 11.1970 -1.5285 3.7273 16 1 11.4449 -3.6002 4.9637 17 1 10.9988 -3.6563 2.5810 18 7 2.0184 -0.6906 -1.1962 19 6 2.1470 -0.0183 -2.3571 20 8 1.8580 1.1626 -2.4117 21 6 2.6357 -0.7103 -3.5557 22 6 3.0151 -2.0703 -3.6468 23 7 3.3883 -2.3072 -4.8724 24 7 3.2807 -1.1311 -5.6223 25 6 3.6121 -0.9881 -7.0422 26 6 2.8199 -0.1515 -4.8183 27 7 2.5762 1.1582 -5.1788 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -0.1583 2.1370 32 1 1.6055 -1.7199 1.2951 33 1 3.9825 -0.4622 0.4318 34 1 5.9637 -2.0990 1.2433 35 1 6.1094 -0.5373 2.0849 36 1 9.0480 -3.8978 5.9306 37 1 2.2490 -1.6317 -1.1527 38 1 2.9959 -2.7886 -2.8406 39 1 4.6596 -0.7042 -7.1440 40 1 3.4413 -1.9360 -7.5524 41 1 2.9820 -0.2176 -7.4866 42 1 2.2429 1.7884 -4.5210 43 1 2.7382 1.4487 -6.0901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284201817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:48 Heat of formation + Delta-G solvation = -2.372752 kcal Electronic energy + Delta-G solvation = -26455.257543 eV Core-core repulsion = 22470.145916 eV Total energy + Delta-G solvation = -3985.111627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67541 -39.77697 -38.87828 -36.37514 -35.28581 -33.61401 -33.40288 -32.40702 -31.37709 -29.38292 -28.84234 -27.37398 -25.94823 -25.34499 -23.30458 -21.78889 -20.81038 -20.45138 -20.28277 -18.46822 -17.83819 -17.29270 -16.68857 -16.36015 -16.20826 -16.13630 -15.73273 -15.00731 -14.92015 -14.79105 -14.76613 -14.08381 -13.99483 -13.67275 -13.39123 -13.28242 -13.15668 -12.99545 -12.83369 -12.72419 -12.48942 -12.12934 -11.75920 -11.65094 -11.20949 -11.17413 -11.02440 -11.02020 -10.74873 -10.00745 -9.80683 -9.45880 -9.40487 -9.25236 -9.04460 -8.89572 -8.22006 -8.20627 -6.47774 -6.19592 -3.89979 1.50432 1.83728 1.96284 2.99110 3.09129 3.15560 3.25194 3.25259 3.29260 3.32792 3.36265 3.74909 4.04726 4.22611 4.45787 4.55944 4.64669 4.83204 4.88793 4.93564 5.06915 5.07932 5.15476 5.17901 5.24826 5.42061 5.50533 5.57857 5.75827 5.83138 5.90100 5.91950 5.99851 6.17133 6.18634 6.34540 6.60589 6.88869 7.00573 7.34671 7.52169 7.61484 7.70812 8.17103 8.37234 8.62001 9.25699 10.87767 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011085 B = 0.002418 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.301309 B =11578.339230 C =13497.109048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.739 5.739 6 C 0.532 3.468 7 O -0.517 6.517 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.724 5.724 19 C 0.609 3.391 20 O -0.569 6.569 21 C -0.375 4.375 22 C 0.115 3.885 23 N -0.302 5.302 24 N -0.402 5.402 25 C 0.101 3.899 26 C 0.435 3.565 27 N -0.830 5.830 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.399 0.601 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.401 0.599 38 H 0.189 0.811 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.431 0.569 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.119 8.609 -25.192 30.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.030 3.970 3 H 0.113 0.887 4 C -0.012 4.012 5 N -0.394 5.394 6 C 0.318 3.682 7 O -0.391 6.391 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.376 5.376 19 C 0.399 3.601 20 O -0.450 6.450 21 C -0.394 4.394 22 C -0.076 4.076 23 N -0.120 5.120 24 N -0.190 5.190 25 C -0.041 4.041 26 C 0.200 3.800 27 N -0.380 5.380 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.234 0.766 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.236 0.764 38 H 0.206 0.794 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.268 0.732 43 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -15.829 7.673 -24.374 30.059 hybrid contribution 1.919 1.195 -1.357 2.637 sum -13.910 8.868 -25.731 30.565 Atomic orbital electron populations 1.22103 0.94230 1.02619 1.02900 1.21189 0.94782 0.97794 0.83203 0.88689 1.21620 0.81131 1.01327 0.97116 1.45996 1.06813 1.61967 1.24619 1.20307 0.89494 0.76745 0.81618 1.90708 1.69870 1.46069 1.32500 1.23530 0.93580 1.05674 1.07642 1.85375 1.04530 1.73052 1.20333 1.22829 0.91567 1.44313 1.09672 0.90997 1.24988 0.99558 0.94559 0.94465 1.70010 1.35487 1.35451 1.09369 0.86230 0.82823 0.78459 0.78024 1.19961 1.20826 1.19938 1.45773 1.68340 1.14175 1.09270 1.16911 0.75830 0.85485 0.81826 1.90677 1.53246 1.15877 1.85211 1.19235 1.30772 0.95847 0.93557 1.23818 0.94250 0.94579 0.94917 1.77182 1.27134 1.02941 1.04734 1.48211 1.54935 1.06199 1.09669 1.21826 1.01749 1.04419 0.76057 1.18055 0.89588 0.82899 0.89441 1.41801 1.73796 1.06620 1.15773 0.91249 0.91647 0.92071 0.90060 0.90923 0.76631 0.89210 0.89277 0.92147 0.76389 0.79393 0.90578 0.88613 0.90120 0.73193 0.77221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 2 C 0.14 1.21 2.73 -67.93 -0.19 1.03 16 3 H 0.10 0.97 7.58 -51.93 -0.39 0.58 16 4 C 0.11 1.21 5.23 -4.04 -0.02 1.19 16 5 N -0.74 -9.49 5.39 -60.29 -0.32 -9.81 16 6 C 0.53 9.70 7.85 -10.98 -0.09 9.62 16 7 O -0.52 -11.49 15.86 5.55 0.09 -11.40 16 8 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 11 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.23 13.22 55.49 0.73 -25.50 16 14 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 N -0.72 -6.30 4.51 -55.08 -0.25 -6.55 16 19 C 0.61 6.46 7.76 -12.81 -0.10 6.36 16 20 O -0.57 -7.24 14.80 5.19 0.08 -7.16 16 21 C -0.37 -3.75 6.15 -104.82 -0.64 -4.40 16 22 C 0.11 1.07 11.49 -16.97 -0.20 0.88 16 23 N -0.30 -3.17 12.47 30.88 0.38 -2.78 16 24 N -0.40 -3.39 4.00 -66.82 -0.27 -3.66 16 25 C 0.10 0.41 11.25 59.85 0.67 1.08 16 26 C 0.44 3.89 7.98 -153.78 -1.23 2.66 16 27 N -0.83 -5.18 9.02 31.40 0.28 -4.90 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.40 4.42 8.14 -40.82 -0.33 4.09 16 34 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 35 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 36 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 37 H 0.40 2.96 7.55 -40.82 -0.31 2.66 16 38 H 0.19 1.22 7.50 -52.49 -0.39 0.83 16 39 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 40 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.12 7.46 -51.93 -0.39 -0.27 16 42 H 0.43 3.16 7.01 -40.82 -0.29 2.88 16 43 H 0.40 1.19 8.04 -40.82 -0.33 0.87 16 LS Contribution 384.46 15.07 5.79 5.79 Total: -1.00 -38.25 384.46 -7.51 -45.76 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.78 Total: 5.91 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -1.01 Total: 1.63 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.56 Total: -53.20 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.16 Total: -18.56 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -38.25 -7.51 -45.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.385 kcal (2) G-P(sol) polarization free energy of solvation -38.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds