Wall clock time and date at job start Sat Apr 11 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 N 1.46498 * 109.47113 * 174.99658 * 4 2 1 6 6 C 1.34781 * 120.00367 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99659 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00106 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.46976 * 180.02562 * 8 6 5 10 10 C 1.76202 * 99.99942 * 180.02562 * 9 8 6 11 11 H 1.07993 * 119.99896 * 0.02562 * 10 9 8 12 12 C 1.38802 * 119.99687 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00004 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99851 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.47037 * 60.00093 * 14 12 10 16 16 H 1.48498 * 109.47283 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46971 * 300.00610 * 14 12 10 18 18 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 19 19 C 1.34770 * 119.99955 * 84.99585 * 18 2 1 20 20 O 1.21694 * 120.00226 * 0.02562 * 19 18 2 21 21 C 1.46775 * 120.00052 * 180.02562 * 19 18 2 22 22 C 1.41483 * 126.51678 * 359.68687 * 21 19 18 23 23 N 1.30288 * 108.18980 * 179.85794 * 22 21 19 24 24 N 1.39898 * 109.23052 * 0.41261 * 23 22 21 25 25 C 1.46500 * 125.74705 * 179.75923 * 24 23 22 26 26 C 1.34845 * 108.50437 * 359.73281 * 24 23 22 27 27 N 1.38011 * 126.44316 * 180.02562 * 26 24 23 28 28 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 29 29 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47223 * 295.00080 * 4 2 1 32 32 H 1.09006 * 109.47396 * 55.00290 * 4 2 1 33 33 H 0.97004 * 120.00154 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.46985 * 300.00288 * 8 6 5 35 35 H 1.08998 * 109.46839 * 60.00494 * 8 6 5 36 36 H 0.96999 * 119.99473 * 180.02562 * 13 12 10 37 37 H 0.96997 * 120.00110 * 265.00363 * 18 2 1 38 38 H 1.07997 * 125.90813 * 0.02562 * 22 21 19 39 39 H 1.08997 * 109.47443 * 269.97613 * 25 24 23 40 40 H 1.09004 * 109.46976 * 29.97640 * 25 24 23 41 41 H 1.09003 * 109.47393 * 149.97135 * 25 24 23 42 42 H 0.96997 * 120.00238 * 179.97438 * 27 26 24 43 43 H 0.97004 * 120.00061 * 359.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1732 -1.4283 2.1911 7 8 3.5701 -1.8833 3.1399 8 6 5.6751 -1.5360 2.1309 9 16 6.2785 -2.3894 3.6087 10 6 8.0104 -2.3752 3.2845 11 1 8.3866 -1.9214 2.3796 12 6 8.8911 -2.9464 4.1926 13 7 8.4324 -3.4990 5.2958 14 14 10.7271 -2.9320 3.8486 15 1 11.1970 -1.5285 3.7273 16 1 11.4449 -3.6002 4.9637 17 1 10.9988 -3.6563 2.5810 18 7 2.0184 -0.6906 -1.1962 19 6 2.1470 -0.0183 -2.3571 20 8 1.8580 1.1626 -2.4117 21 6 2.6357 -0.7103 -3.5557 22 6 3.0151 -2.0703 -3.6468 23 7 3.3883 -2.3072 -4.8724 24 7 3.2807 -1.1311 -5.6223 25 6 3.6121 -0.9881 -7.0422 26 6 2.8199 -0.1515 -4.8183 27 7 2.5762 1.1582 -5.1788 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -0.1583 2.1370 32 1 1.6055 -1.7199 1.2951 33 1 3.9825 -0.4622 0.4318 34 1 5.9637 -2.0990 1.2433 35 1 6.1094 -0.5373 2.0849 36 1 9.0480 -3.8978 5.9306 37 1 2.2490 -1.6317 -1.1527 38 1 2.9959 -2.7886 -2.8406 39 1 4.6596 -0.7042 -7.1440 40 1 3.4413 -1.9360 -7.5524 41 1 2.9820 -0.2176 -7.4866 42 1 2.2429 1.7884 -4.5210 43 1 2.7382 1.4487 -6.0901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284201817.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:47 Heat of formation + Delta-G solvation = -32.746958 kcal Electronic energy + Delta-G solvation = -26456.574667 eV Core-core repulsion = 22470.145916 eV Total energy + Delta-G solvation = -3986.428751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31578 -40.83263 -40.02388 -37.33212 -35.89973 -34.69237 -34.55726 -34.01860 -32.24293 -30.79069 -29.51218 -27.84865 -27.71676 -26.75391 -24.03237 -22.49042 -21.71367 -21.46983 -21.16298 -19.83885 -19.04428 -18.04404 -17.70528 -17.51474 -17.10916 -16.86330 -16.78180 -16.71055 -16.30005 -15.85102 -15.63225 -15.42681 -14.88332 -14.75076 -14.49571 -14.25215 -14.10932 -13.77255 -13.73952 -13.50436 -13.40040 -13.19551 -13.15188 -12.88024 -12.85385 -12.60062 -12.25225 -11.99497 -11.87061 -11.72068 -11.11541 -10.95101 -10.82482 -10.26033 -10.15125 -10.10214 -9.92560 -8.85532 -8.63968 -8.33017 -6.10447 0.84029 1.26532 1.28432 1.31051 1.44571 1.47769 1.57791 1.64245 2.22650 2.29543 2.42678 2.59935 2.77572 3.00910 3.34180 3.55352 3.66295 4.00163 4.04948 4.13085 4.18785 4.31899 4.35101 4.37916 4.50964 4.54242 4.57251 4.65984 4.67576 4.79944 4.84719 5.07885 5.29503 5.39971 5.43241 5.44674 5.54096 5.65447 6.21249 6.28374 6.48004 6.51220 6.64843 6.92177 7.08332 7.24798 7.40474 8.75834 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011085 B = 0.002418 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.301309 B =11578.339230 C =13497.109048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.147 3.853 3 H 0.087 0.913 4 C 0.115 3.885 5 N -0.712 5.712 6 C 0.537 3.463 7 O -0.562 6.562 8 C -0.132 4.132 9 S -0.147 6.147 10 C -0.547 4.547 11 H 0.081 0.919 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.997 3.003 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.262 1.262 18 N -0.717 5.717 19 C 0.608 3.392 20 O -0.594 6.594 21 C -0.397 4.397 22 C 0.114 3.886 23 N -0.332 5.332 24 N -0.403 5.403 25 C 0.090 3.910 26 C 0.430 3.570 27 N -0.817 5.817 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.412 0.588 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.271 0.729 37 H 0.409 0.591 38 H 0.209 0.791 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.428 0.572 43 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.696 9.472 -27.470 32.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.105 0.895 4 C -0.009 4.009 5 N -0.366 5.366 6 C 0.323 3.677 7 O -0.440 6.440 8 C -0.283 4.283 9 S 0.081 5.919 10 C -0.695 4.695 11 H 0.099 0.901 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.818 3.182 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.187 1.187 18 N -0.368 5.368 19 C 0.399 3.601 20 O -0.477 6.477 21 C -0.417 4.417 22 C -0.076 4.076 23 N -0.151 5.151 24 N -0.192 5.192 25 C -0.050 4.050 26 C 0.193 3.807 27 N -0.368 5.368 28 H 0.098 0.902 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.248 0.752 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.245 0.755 38 H 0.225 0.775 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.264 0.736 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -15.419 8.556 -26.731 32.023 hybrid contribution 1.679 1.002 -0.780 2.105 sum -13.739 9.558 -27.511 32.202 Atomic orbital electron populations 1.22053 0.93086 1.03205 1.02964 1.21053 0.95474 0.96956 0.82366 0.89511 1.21750 0.79245 1.01881 0.97996 1.45727 1.07828 1.59787 1.23276 1.19963 0.88706 0.77004 0.82062 1.90701 1.70317 1.48451 1.34513 1.23381 0.95030 1.05595 1.04275 1.85520 1.05608 1.74978 1.25834 1.23170 0.91855 1.44391 1.10106 0.90082 1.26105 1.05115 0.93837 0.94038 1.70174 1.37419 1.36508 1.10577 0.85030 0.75884 0.79012 0.78234 1.18791 1.20361 1.18682 1.45688 1.67919 1.14450 1.08739 1.17029 0.75538 0.85198 0.82290 1.90661 1.54521 1.16909 1.85639 1.19346 1.32020 0.96379 0.93912 1.24161 0.93542 0.94759 0.95185 1.77105 1.28117 1.04419 1.05424 1.48466 1.54510 1.05435 1.10760 1.22183 1.03017 1.05682 0.74111 1.18226 0.89272 0.83753 0.89492 1.41768 1.72885 1.05551 1.16589 0.90208 0.92542 0.91239 0.90178 0.90435 0.75164 0.87206 0.87685 0.91996 0.75483 0.77486 0.89651 0.88266 0.87361 0.73589 0.75397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.48 71.98 0.68 -1.51 16 2 C 0.15 2.38 2.73 44.99 0.12 2.51 16 3 H 0.09 1.63 7.58 -2.39 -0.02 1.61 16 4 C 0.12 2.27 5.23 86.38 0.45 2.72 16 5 N -0.71 -17.01 5.39 -463.05 -2.49 -19.50 16 6 C 0.54 19.08 7.85 87.66 0.69 19.77 16 7 O -0.56 -25.05 15.86 -3.05 -0.05 -25.10 16 8 C -0.13 -5.16 6.16 71.24 0.44 -4.72 16 9 S -0.15 -8.09 20.57 -56.49 -1.16 -9.26 16 10 C -0.55 -31.30 9.50 67.95 0.65 -30.66 16 11 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 12 C 0.01 0.79 5.49 84.86 0.47 1.26 16 13 N -0.91 -55.95 13.22 21.65 0.29 -55.66 16 14 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 15 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 18 N -0.72 -11.30 4.51 -446.40 -2.01 -13.31 16 19 C 0.61 12.17 7.76 86.48 0.67 12.84 16 20 O -0.59 -14.54 14.80 -4.33 -0.06 -14.61 16 21 C -0.40 -7.52 6.15 -19.99 -0.12 -7.64 16 22 C 0.11 1.99 11.49 85.72 0.99 2.98 16 23 N -0.33 -6.64 12.47 -56.23 -0.70 -7.34 16 24 N -0.40 -6.24 4.00 -365.31 -1.46 -7.70 16 25 C 0.09 0.56 11.25 127.77 1.44 2.00 16 26 C 0.43 7.11 7.98 132.69 1.06 8.17 16 27 N -0.82 -8.93 9.02 -54.57 -0.49 -9.42 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.41 8.12 8.14 -92.71 -0.75 7.37 16 34 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 35 H 0.10 3.79 8.14 -2.40 -0.02 3.77 16 36 H 0.27 15.50 8.31 -92.71 -0.77 14.72 16 37 H 0.41 5.26 7.55 -92.71 -0.70 4.56 16 38 H 0.21 2.40 7.50 -2.91 -0.02 2.38 16 39 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.10 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.11 0.04 7.46 -2.39 -0.02 0.02 16 42 H 0.43 5.76 7.01 -92.71 -0.65 5.11 16 43 H 0.41 1.62 8.04 -92.71 -0.75 0.88 16 Total: -1.00 -84.36 384.46 -0.35 -84.71 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -1.76 Total: 23.73 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 7.52 Total: 7.72 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -6.87 Total: -112.94 kcal Atomic # 8 Polarization: -39.60 SS G_CDS: -0.11 Total: -39.71 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.26 kcal Total: -84.36 -0.35 -84.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201817.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.961 kcal (2) G-P(sol) polarization free energy of solvation -84.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds