Wall clock time and date at job start Sat Apr 11 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 5 5 C 1.34773 * 119.99909 * 275.00159 * 4 2 1 6 6 O 1.21277 * 120.00549 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99847 * 180.02562 * 5 4 2 8 8 S 1.81003 * 109.47081 * 179.97438 * 7 5 4 9 9 C 1.76199 * 100.00192 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99936 * 359.97438 * 9 8 7 11 11 C 1.38793 * 120.00306 * 179.97438 * 9 8 7 12 12 N 1.31628 * 120.00100 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00063 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47419 * 60.00063 * 13 11 9 15 15 H 1.48502 * 109.47029 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47174 * 299.99701 * 13 11 9 17 17 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 18 18 H 1.09001 * 109.46992 * 174.99449 * 17 2 1 19 19 C 1.52996 * 109.47276 * 294.99872 * 17 2 1 20 20 N 1.46510 * 109.47089 * 54.99980 * 17 2 1 21 21 C 1.34774 * 119.99669 * 154.99962 * 20 17 2 22 22 O 1.21555 * 120.00452 * 359.97438 * 21 20 17 23 23 C 1.47873 * 119.99707 * 179.97438 * 21 20 17 24 24 N 1.34548 * 126.04813 * 0.02562 * 23 21 20 25 25 C 1.30867 * 107.27093 * 180.02562 * 24 23 21 26 26 N 1.34587 * 107.62357 * 359.97438 * 25 24 23 27 27 C 1.46500 * 125.74754 * 179.97438 * 26 25 24 28 28 N 1.28848 * 108.50250 * 359.73385 * 26 25 24 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 0.97003 * 119.99825 * 95.00368 * 4 2 1 33 33 H 1.08988 * 109.47257 * 300.00034 * 7 5 4 34 34 H 1.08997 * 109.47148 * 60.00429 * 7 5 4 35 35 H 0.96996 * 120.00308 * 180.02562 * 12 11 9 36 36 H 1.09004 * 109.47120 * 180.02562 * 19 17 2 37 37 H 1.08998 * 109.47375 * 300.00219 * 19 17 2 38 38 H 1.09000 * 109.46912 * 60.00396 * 19 17 2 39 39 H 0.96996 * 119.99772 * 335.00277 * 20 17 2 40 40 H 1.07998 * 126.19099 * 180.02562 * 25 24 23 41 41 H 1.08990 * 109.47126 * 90.00060 * 27 26 25 42 42 H 1.08998 * 109.47349 * 210.00785 * 27 26 25 43 43 H 1.09005 * 109.47274 * 330.00039 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8590 1.1585 2.4116 7 6 2.6499 -0.7287 3.5874 8 16 2.7113 0.4344 4.9729 9 6 3.3157 -0.6305 6.2399 10 1 3.5249 -1.6670 6.0199 11 6 3.5230 -0.1374 7.5206 12 7 3.2675 1.1257 7.7889 13 14 4.1631 -1.2666 8.8639 14 1 5.4891 -1.8050 8.4679 15 1 4.2965 -0.5030 10.1306 16 1 3.2118 -2.3897 9.0616 17 6 2.0401 -0.7212 -1.2492 18 1 3.1264 -0.6441 -1.2952 19 6 1.6354 -2.1954 -1.1881 20 7 1.4559 -0.1035 -2.4424 21 6 2.0913 -0.1936 -3.6275 22 8 3.1493 -0.7869 -3.7064 23 6 1.5014 0.4294 -4.8319 24 7 0.3430 1.1119 -4.8837 25 6 0.1747 1.4983 -6.1226 26 7 1.2278 1.0555 -6.8342 27 6 1.4413 1.2660 -8.2682 28 7 2.0191 0.4195 -6.0407 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.2491 -1.6318 1.1525 33 1 1.9778 -1.5510 3.8324 34 1 3.6492 -1.1204 3.3978 35 1 3.4127 1.4704 8.6839 36 1 1.9991 -2.7092 -2.0779 37 1 2.0699 -2.6549 -0.3004 38 1 0.5490 -2.2723 -1.1422 39 1 0.6119 0.3703 -2.3794 40 1 -0.6580 2.0699 -6.5048 41 1 1.9982 2.1904 -8.4207 42 1 2.0067 0.4292 -8.6781 43 1 0.4775 1.3350 -8.7727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001285297225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:22 Heat of formation + Delta-G solvation = 24.675299 kcal Electronic energy + Delta-G solvation = -26178.226083 eV Core-core repulsion = 22194.287348 eV Total energy + Delta-G solvation = -3983.938735 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.89868 -40.27820 -39.18290 -36.92772 -35.11831 -33.99604 -32.40654 -32.22463 -31.37426 -29.83820 -28.47773 -28.23629 -25.48316 -25.26244 -24.13855 -22.77974 -21.27813 -20.51195 -19.89776 -18.80791 -17.86363 -17.26746 -17.00346 -16.60158 -16.26254 -15.86975 -15.40331 -15.03477 -14.90090 -14.77928 -14.55795 -14.31813 -13.92365 -13.86100 -13.74957 -13.26396 -13.12430 -12.77992 -12.53840 -12.41945 -12.39130 -11.98789 -11.86429 -11.19083 -11.04797 -11.01806 -11.01399 -10.94004 -10.90714 -10.74727 -10.53750 -10.04612 -9.80511 -9.44452 -9.36183 -9.04411 -8.93544 -8.21758 -6.47538 -6.19273 -3.89793 0.96845 1.63614 1.67201 2.57174 3.03219 3.09051 3.11779 3.25687 3.29792 3.34078 3.63780 3.75515 3.87335 4.22681 4.22897 4.37106 4.39423 4.56225 4.68309 4.69849 4.94559 5.12892 5.15837 5.23248 5.27387 5.44754 5.49584 5.55191 5.66365 5.70653 5.80896 5.85211 5.91554 5.95829 6.00207 6.12842 6.16808 6.24741 6.62964 7.07444 7.54689 7.61601 7.69792 7.86369 8.37339 8.61799 9.25984 10.88088 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.035486 B = 0.001701 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.854427 B =16456.064411 C =16709.439021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.138 3.862 3 H 0.096 0.904 4 N -0.731 5.731 5 C 0.535 3.465 6 O -0.515 6.515 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.072 0.928 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.274 1.274 17 C 0.137 3.863 18 H 0.099 0.901 19 C -0.169 4.169 20 N -0.701 5.701 21 C 0.619 3.381 22 O -0.515 6.515 23 C 0.142 3.858 24 N -0.484 5.484 25 C 0.193 3.807 26 N -0.305 5.305 27 C 0.085 3.915 28 N -0.251 5.251 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.269 0.731 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.411 0.589 40 H 0.228 0.772 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.644 -2.431 -33.405 34.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.032 3.968 3 H 0.114 0.886 4 N -0.388 5.388 5 C 0.321 3.679 6 O -0.389 6.389 7 C -0.305 4.305 8 S 0.168 5.832 9 C -0.685 4.685 10 H 0.090 0.910 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.200 1.200 17 C 0.032 3.968 18 H 0.117 0.883 19 C -0.227 4.227 20 N -0.356 5.356 21 C 0.400 3.600 22 O -0.387 6.387 23 C -0.138 4.138 24 N -0.210 5.210 25 C -0.103 4.103 26 N -0.100 5.100 27 C -0.056 4.056 28 N -0.090 5.090 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.235 0.765 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.250 0.750 40 H 0.244 0.756 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.946 -0.997 -33.090 34.045 hybrid contribution 0.182 -2.051 0.385 2.095 sum -7.764 -3.048 -32.704 33.751 Atomic orbital electron populations 1.22278 0.95053 1.02593 1.02809 1.20957 0.94582 0.97777 0.83467 0.88633 1.46073 1.69612 1.14019 1.09086 1.20317 0.76712 0.87212 0.83674 1.90702 1.48124 1.15700 1.84352 1.23537 1.03749 1.04893 0.98273 1.85387 1.86255 1.12868 0.98738 1.22837 1.51045 0.98161 0.96427 0.90957 1.24981 0.95086 0.95527 0.97929 1.70005 1.45477 1.13222 1.21612 0.86229 0.79326 0.80016 0.79954 1.19940 1.20829 1.19952 1.21194 0.99733 0.92755 0.83074 0.88290 1.22264 1.02459 0.95097 1.02857 1.45735 1.26299 1.56617 1.06921 1.16225 0.83552 0.79283 0.80929 1.90851 1.21324 1.41824 1.84734 1.23701 0.92675 1.03993 0.93410 1.71269 1.16451 1.14560 1.18697 1.26522 0.95026 1.01353 0.87375 1.47416 1.15218 1.36633 1.10782 1.22286 1.05063 1.04981 0.73280 1.74357 1.18473 1.14498 1.01689 0.91809 0.90965 0.91949 0.76546 0.89150 0.89129 0.92144 0.91551 0.91131 0.91490 0.75043 0.75575 0.88961 0.88072 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 9.00 37.16 0.33 -1.42 16 2 C 0.14 1.61 2.62 -67.93 -0.18 1.43 16 3 H 0.10 1.32 7.58 -51.93 -0.39 0.92 16 4 N -0.73 -9.56 4.99 -53.81 -0.27 -9.82 16 5 C 0.53 9.80 7.81 -10.99 -0.09 9.72 16 6 O -0.52 -11.47 15.52 5.56 0.09 -11.38 16 7 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 8 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 9 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 10 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 11 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 12 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 13 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 17 C 0.14 1.42 2.62 -67.93 -0.18 1.24 16 18 H 0.10 1.17 7.58 -51.93 -0.39 0.78 16 19 C -0.17 -1.48 9.00 37.16 0.33 -1.15 16 20 N -0.70 -7.20 4.99 -54.74 -0.27 -7.47 16 21 C 0.62 7.82 7.80 -12.32 -0.10 7.72 16 22 O -0.52 -8.07 16.75 5.32 0.09 -7.98 16 23 C 0.14 1.64 7.96 -156.36 -1.24 0.40 16 24 N -0.48 -4.49 11.09 -12.36 -0.14 -4.63 16 25 C 0.19 1.05 12.62 -90.48 -1.14 -0.09 16 26 N -0.31 -1.89 3.72 -69.40 -0.26 -2.14 16 27 C 0.08 0.07 11.38 59.85 0.68 0.75 16 28 N -0.25 -2.73 12.08 32.07 0.39 -2.34 16 29 H 0.06 0.58 6.56 -51.93 -0.34 0.24 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.53 6.29 -51.93 -0.33 0.20 16 32 H 0.40 4.13 6.58 -40.82 -0.27 3.86 16 33 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 34 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.54 6.29 -51.93 -0.33 0.21 16 38 H 0.07 0.53 6.56 -51.93 -0.34 0.19 16 39 H 0.41 3.69 6.29 -40.82 -0.26 3.44 16 40 H 0.23 0.04 8.06 -52.49 -0.42 -0.39 16 41 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 42 H 0.10 0.10 8.14 -51.93 -0.42 -0.33 16 43 H 0.10 -0.26 8.14 -51.93 -0.42 -0.68 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -40.12 380.64 -7.87 -47.98 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.57 Total: 2.18 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.15 Total: 2.73 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.18 Total: -51.93 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: 0.18 Total: -19.37 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -40.12 -7.87 -47.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285297225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.659 kcal (2) G-P(sol) polarization free energy of solvation -40.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds