Wall clock time and date at job start Sat Apr 11 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 5 5 C 1.34773 * 119.99909 * 275.00159 * 4 2 1 6 6 O 1.21277 * 120.00549 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99847 * 180.02562 * 5 4 2 8 8 S 1.81003 * 109.47081 * 179.97438 * 7 5 4 9 9 C 1.76199 * 100.00192 * 180.02562 * 8 7 5 10 10 H 1.08007 * 119.99936 * 359.97438 * 9 8 7 11 11 C 1.38793 * 120.00306 * 179.97438 * 9 8 7 12 12 N 1.31628 * 120.00100 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00063 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47419 * 60.00063 * 13 11 9 15 15 H 1.48502 * 109.47029 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47174 * 299.99701 * 13 11 9 17 17 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 18 18 H 1.09001 * 109.46992 * 174.99449 * 17 2 1 19 19 C 1.52996 * 109.47276 * 294.99872 * 17 2 1 20 20 N 1.46510 * 109.47089 * 54.99980 * 17 2 1 21 21 C 1.34774 * 119.99669 * 154.99962 * 20 17 2 22 22 O 1.21555 * 120.00452 * 359.97438 * 21 20 17 23 23 C 1.47873 * 119.99707 * 179.97438 * 21 20 17 24 24 N 1.34548 * 126.04813 * 0.02562 * 23 21 20 25 25 C 1.30867 * 107.27093 * 180.02562 * 24 23 21 26 26 N 1.34587 * 107.62357 * 359.97438 * 25 24 23 27 27 C 1.46500 * 125.74754 * 179.97438 * 26 25 24 28 28 N 1.28848 * 108.50250 * 359.73385 * 26 25 24 29 29 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 31 31 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 32 32 H 0.97003 * 119.99825 * 95.00368 * 4 2 1 33 33 H 1.08988 * 109.47257 * 300.00034 * 7 5 4 34 34 H 1.08997 * 109.47148 * 60.00429 * 7 5 4 35 35 H 0.96996 * 120.00308 * 180.02562 * 12 11 9 36 36 H 1.09004 * 109.47120 * 180.02562 * 19 17 2 37 37 H 1.08998 * 109.47375 * 300.00219 * 19 17 2 38 38 H 1.09000 * 109.46912 * 60.00396 * 19 17 2 39 39 H 0.96996 * 119.99772 * 335.00277 * 20 17 2 40 40 H 1.07998 * 126.19099 * 180.02562 * 25 24 23 41 41 H 1.08990 * 109.47126 * 90.00060 * 27 26 25 42 42 H 1.08998 * 109.47349 * 210.00785 * 27 26 25 43 43 H 1.09005 * 109.47274 * 330.00039 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8590 1.1585 2.4116 7 6 2.6499 -0.7287 3.5874 8 16 2.7113 0.4344 4.9729 9 6 3.3157 -0.6305 6.2399 10 1 3.5249 -1.6670 6.0199 11 6 3.5230 -0.1374 7.5206 12 7 3.2675 1.1257 7.7889 13 14 4.1631 -1.2666 8.8639 14 1 5.4891 -1.8050 8.4679 15 1 4.2965 -0.5030 10.1306 16 1 3.2118 -2.3897 9.0616 17 6 2.0401 -0.7212 -1.2492 18 1 3.1264 -0.6441 -1.2952 19 6 1.6354 -2.1954 -1.1881 20 7 1.4559 -0.1035 -2.4424 21 6 2.0913 -0.1936 -3.6275 22 8 3.1493 -0.7869 -3.7064 23 6 1.5014 0.4294 -4.8319 24 7 0.3430 1.1119 -4.8837 25 6 0.1747 1.4983 -6.1226 26 7 1.2278 1.0555 -6.8342 27 6 1.4413 1.2660 -8.2682 28 7 2.0191 0.4195 -6.0407 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 2.2491 -1.6318 1.1525 33 1 1.9778 -1.5510 3.8324 34 1 3.6492 -1.1204 3.3978 35 1 3.4127 1.4704 8.6839 36 1 1.9991 -2.7092 -2.0779 37 1 2.0699 -2.6549 -0.3004 38 1 0.5490 -2.2723 -1.1422 39 1 0.6119 0.3703 -2.3794 40 1 -0.6580 2.0699 -6.5048 41 1 1.9982 2.1904 -8.4207 42 1 2.0067 0.4292 -8.6781 43 1 0.4775 1.3350 -8.7727 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285297225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:21 Heat of formation + Delta-G solvation = -6.129399 kcal Electronic energy + Delta-G solvation = -26179.561875 eV Core-core repulsion = 22194.287348 eV Total energy + Delta-G solvation = -3985.274527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.45924 -41.33153 -40.44616 -38.06570 -35.64994 -35.08653 -34.56642 -32.80894 -32.54844 -30.81975 -29.76537 -28.65413 -27.64148 -26.04820 -24.94256 -23.32820 -22.24459 -21.60073 -20.95553 -19.94233 -19.40443 -18.03203 -17.80111 -17.57905 -17.27249 -16.92927 -16.85693 -16.47036 -16.13108 -15.89109 -15.67143 -15.46753 -15.18877 -14.73602 -14.46685 -14.19675 -14.00107 -13.97357 -13.65124 -13.37872 -13.22675 -13.15009 -12.87525 -12.85384 -12.81956 -12.59990 -12.12931 -11.97948 -11.72874 -11.58780 -11.50304 -11.46060 -11.11324 -10.95408 -10.65170 -10.28077 -10.25618 -10.18287 -8.64384 -8.32858 -6.10661 0.25946 1.09061 1.18513 1.30760 1.45129 1.47867 1.57174 1.61964 1.90341 2.19604 2.28781 2.38450 3.01250 3.05983 3.33361 3.41764 3.49532 3.78615 3.88508 3.96837 4.07216 4.31939 4.34350 4.36085 4.40792 4.45250 4.54036 4.66203 4.69749 4.70032 4.82123 4.90013 4.94648 5.15031 5.23906 5.30077 5.39655 5.43430 5.45325 5.63545 6.21337 6.23595 6.48107 6.86575 7.05511 7.08456 7.23869 8.76052 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.035486 B = 0.001701 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.854427 B =16456.064411 C =16709.439021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.072 0.928 4 N -0.706 5.706 5 C 0.538 3.462 6 O -0.561 6.561 7 C -0.131 4.131 8 S -0.149 6.149 9 C -0.548 4.548 10 H 0.083 0.917 11 C 0.014 3.986 12 N -0.911 5.911 13 Si 0.998 3.002 14 H -0.263 1.263 15 H -0.279 1.279 16 H -0.261 1.261 17 C 0.145 3.855 18 H 0.083 0.917 19 C -0.164 4.164 20 N -0.689 5.689 21 C 0.616 3.384 22 O -0.557 6.557 23 C 0.114 3.886 24 N -0.508 5.508 25 C 0.207 3.793 26 N -0.300 5.300 27 C 0.073 3.927 28 N -0.285 5.285 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.416 0.584 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.271 0.729 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.419 0.581 40 H 0.281 0.719 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.821 -3.990 -35.203 36.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.091 0.909 4 N -0.362 5.362 5 C 0.324 3.676 6 O -0.438 6.438 7 C -0.282 4.282 8 S 0.078 5.922 9 C -0.696 4.696 10 H 0.101 0.899 11 C -0.191 4.191 12 N -0.548 5.548 13 Si 0.819 3.181 14 H -0.188 1.188 15 H -0.204 1.204 16 H -0.186 1.186 17 C 0.040 3.960 18 H 0.101 0.899 19 C -0.222 4.222 20 N -0.343 5.343 21 C 0.399 3.601 22 O -0.432 6.432 23 C -0.165 4.165 24 N -0.234 5.234 25 C -0.087 4.087 26 N -0.095 5.095 27 C -0.065 4.065 28 N -0.127 5.127 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.255 0.745 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.258 0.742 40 H 0.296 0.704 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.150 -2.586 -34.946 36.216 hybrid contribution 0.488 -1.517 0.686 1.735 sum -8.662 -4.103 -34.260 35.576 Atomic orbital electron populations 1.22230 0.93450 1.03838 1.02627 1.20978 0.95691 0.96592 0.83116 0.90945 1.45785 1.67881 1.14615 1.07925 1.20037 0.76528 0.86550 0.84480 1.90695 1.50429 1.17601 1.85094 1.23383 1.05614 1.03309 0.95897 1.85562 1.86646 1.17279 1.02730 1.23192 1.50963 0.98533 0.96899 0.89868 1.26108 0.95066 0.97171 1.00712 1.70174 1.46803 1.15478 1.22308 0.85017 0.79056 0.77782 0.76219 1.18775 1.20429 1.18604 1.21066 0.98800 0.93783 0.82351 0.89925 1.22248 1.03481 0.93347 1.03146 1.45636 1.26200 1.56141 1.06330 1.16491 0.83083 0.78770 0.81772 1.90810 1.23078 1.43834 1.85495 1.23463 0.94033 1.05740 0.93252 1.71215 1.15885 1.15266 1.21053 1.27516 0.95329 0.99714 0.86149 1.47818 1.14505 1.35137 1.12021 1.22776 1.07770 1.05367 0.70606 1.74263 1.20264 1.15964 1.02166 0.89799 0.93461 0.89858 0.74508 0.86886 0.87247 0.92020 0.92455 0.89634 0.90002 0.74173 0.70399 0.87637 0.88515 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.00 71.98 0.65 -2.52 16 2 C 0.14 3.22 2.62 44.99 0.12 3.34 16 3 H 0.07 2.05 7.58 -2.39 -0.02 2.03 16 4 N -0.71 -17.59 4.99 -442.54 -2.21 -19.80 16 5 C 0.54 19.62 7.81 87.66 0.68 20.30 16 6 O -0.56 -25.68 15.52 -3.02 -0.05 -25.72 16 7 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 8 S -0.15 -8.30 20.57 -56.49 -1.16 -9.47 16 9 C -0.55 -31.40 9.50 67.95 0.65 -30.76 16 10 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 11 C 0.01 0.81 5.49 84.86 0.47 1.28 16 12 N -0.91 -56.27 13.22 21.65 0.29 -55.98 16 13 Si 1.00 43.81 29.55 68.60 2.03 45.84 16 14 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 15 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 17 C 0.15 2.92 2.62 44.99 0.12 3.03 16 18 H 0.08 1.98 7.58 -2.39 -0.02 1.97 16 19 C -0.16 -2.60 9.00 71.98 0.65 -1.95 16 20 N -0.69 -14.02 4.99 -445.37 -2.22 -16.24 16 21 C 0.62 15.98 7.80 86.80 0.68 16.66 16 22 O -0.56 -18.21 16.75 -3.89 -0.07 -18.28 16 23 C 0.11 2.64 7.96 137.13 1.09 3.73 16 24 N -0.51 -8.78 11.09 -193.03 -2.14 -10.92 16 25 C 0.21 1.70 12.62 180.30 2.27 3.98 16 26 N -0.30 -3.14 3.72 -373.47 -1.39 -4.53 16 27 C 0.07 -0.07 11.38 127.77 1.45 1.38 16 28 N -0.28 -6.16 12.08 -52.44 -0.63 -6.80 16 29 H 0.08 1.30 6.56 -2.39 -0.02 1.29 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.27 6.29 -2.39 -0.02 1.25 16 32 H 0.42 7.61 6.58 -92.71 -0.61 7.00 16 33 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 34 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 35 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.09 1.08 6.29 -2.39 -0.02 1.07 16 38 H 0.08 1.07 6.56 -2.39 -0.02 1.05 16 39 H 0.42 7.21 6.29 -92.71 -0.58 6.63 16 40 H 0.28 -1.25 8.06 -2.91 -0.02 -1.27 16 41 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H 0.10 0.03 8.14 -2.39 -0.02 0.02 16 43 H 0.15 -1.35 8.14 -2.38 -0.02 -1.37 16 Total: -1.00 -92.92 380.64 1.59 -91.33 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -0.12 Total: 16.79 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 9.26 Total: 13.77 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -8.31 Total: -114.26 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.11 Total: -44.00 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.47 kcal Total: -92.92 1.59 -91.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285297225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.205 kcal (2) G-P(sol) polarization free energy of solvation -92.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds