Wall clock time and date at job start Sat Apr 11 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46497 * 109.46815 * 2 1 4 4 N 1.28522 * 124.44410 * 90.02510 * 3 2 1 5 5 C 1.31138 * 109.05907 * 179.97438 * 4 3 2 6 6 C 1.40925 * 105.77323 * 0.22671 * 5 4 3 7 7 C 1.47807 * 127.23221 * 179.76872 * 6 5 4 8 8 O 1.21554 * 120.00029 * 0.02562 * 7 6 5 9 9 N 1.34770 * 119.99694 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00120 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47321 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47467 * 294.99931 * 11 10 9 13 13 C 1.53007 * 109.47154 * 175.00184 * 11 10 9 14 14 N 1.46498 * 109.47120 * 55.00235 * 11 10 9 15 15 C 1.34776 * 120.00089 * 205.00007 * 14 11 10 16 16 O 1.21284 * 120.00018 * 359.97438 * 15 14 11 17 17 C 1.50699 * 120.00017 * 180.02562 * 15 14 11 18 18 S 1.81005 * 109.47157 * 179.97438 * 17 15 14 19 19 C 1.76195 * 99.99976 * 179.97438 * 18 17 15 20 20 H 1.07996 * 120.00209 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99818 * 179.97438 * 19 18 17 22 22 N 1.31639 * 119.99849 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00345 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47172 * 89.99905 * 23 21 19 25 25 H 1.48494 * 109.47458 * 210.00167 * 23 21 19 26 26 H 1.48501 * 109.46949 * 330.00195 * 23 21 19 27 27 N 1.28587 * 124.44585 * 269.99765 * 3 2 1 28 28 H 1.09002 * 109.47458 * 300.00328 * 1 2 3 29 29 H 1.09004 * 109.46838 * 60.00494 * 1 2 3 30 30 H 1.09004 * 109.47135 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47022 * 239.99829 * 2 1 3 32 32 H 1.09004 * 109.46838 * 119.99505 * 2 1 3 33 33 H 1.08002 * 127.10881 * 179.97438 * 5 4 3 34 34 H 0.97008 * 120.00334 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.47175 * 300.00218 * 10 9 7 36 36 H 1.09007 * 109.46947 * 60.00425 * 10 9 7 37 37 H 1.08996 * 109.47108 * 179.97438 * 13 11 10 38 38 H 1.09004 * 109.46726 * 300.00200 * 13 11 10 39 39 H 1.09000 * 109.46998 * 60.00074 * 13 11 10 40 40 H 0.97000 * 119.99793 * 25.00070 * 14 11 10 41 41 H 1.09004 * 109.46708 * 299.99412 * 17 15 14 42 42 H 1.08991 * 109.47446 * 60.00082 * 17 15 14 43 43 H 0.97005 * 119.99627 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0664 1.0599 5 6 2.6828 3.2584 0.7120 6 6 2.6806 3.2693 -0.6972 7 6 3.0686 4.3867 -1.5835 8 8 3.4406 5.4406 -1.1055 9 7 3.0110 4.2367 -2.9216 10 6 3.3960 5.3440 -3.8001 11 6 3.2405 4.9144 -5.2603 12 1 3.9459 4.1130 -5.4804 13 6 3.5224 6.1075 -6.1758 14 7 1.8738 4.4377 -5.4861 15 6 1.6198 3.5674 -6.4834 16 8 2.5226 3.1793 -7.1942 17 6 0.2137 3.0776 -6.7161 18 16 0.1986 1.9299 -8.1157 19 6 -1.5159 1.5260 -8.1616 20 1 -2.1939 1.9669 -7.4459 21 6 -1.9952 0.6420 -9.1183 22 7 -3.2762 0.3407 -9.1529 23 14 -0.8227 -0.1200 -10.3568 24 1 -0.2839 -1.3916 -9.8108 25 1 -1.5489 -0.3932 -11.6229 26 1 0.2970 0.8189 -10.6210 27 7 2.2607 2.0669 -1.0604 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.9684 4.0661 1.3695 34 1 2.7145 3.3955 -3.3031 35 1 2.7551 6.2035 -3.6037 36 1 4.4348 5.6143 -3.6100 37 1 3.4120 5.8013 -7.2160 38 1 2.8170 6.9089 -5.9556 39 1 4.5393 6.4621 -6.0077 40 1 1.1517 4.7485 -4.9179 41 1 -0.1454 2.5665 -5.8228 42 1 -0.4349 3.9256 -6.9352 43 1 -3.6111 -0.2774 -9.8213 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001285710721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:42 Heat of formation + Delta-G solvation = 1.359097 kcal Electronic energy + Delta-G solvation = -26559.482322 eV Core-core repulsion = 22574.532520 eV Total energy + Delta-G solvation = -3984.949802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.73971 -41.11153 -40.36928 -37.49803 -35.83504 -34.98050 -34.66485 -33.73186 -32.66272 -31.43806 -30.08203 -27.88593 -27.84483 -25.79440 -24.59397 -22.89896 -22.58776 -21.64327 -21.48774 -19.95139 -19.06464 -18.22899 -18.01084 -17.66859 -17.46402 -17.10027 -16.87381 -16.40385 -16.23594 -15.98261 -15.67696 -15.33974 -15.02559 -14.98618 -14.73981 -14.13087 -14.04484 -13.81311 -13.57764 -13.34181 -13.32871 -13.14617 -13.04940 -12.99870 -12.93467 -12.58999 -12.38282 -12.09557 -12.04285 -11.86054 -11.56742 -11.44729 -11.16550 -10.99293 -10.58593 -10.52582 -10.23807 -10.17917 -8.98113 -8.51160 -6.21481 0.17184 0.86782 0.99741 1.15301 1.31741 1.47285 1.56119 1.56877 1.94887 2.10786 2.22706 2.26690 2.72216 2.85569 2.87324 3.53397 3.68387 3.87715 3.88749 3.91443 4.03426 4.07163 4.22200 4.22847 4.29426 4.48163 4.56933 4.59201 4.65657 4.71406 4.72093 4.77136 4.95678 5.01211 5.13428 5.17535 5.35056 5.45625 5.51880 5.71011 6.11930 6.25480 6.43123 6.91817 6.94191 7.07209 7.18287 8.61298 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.002923 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.833118 B = 9576.033708 C =12032.275621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 N -0.134 5.134 4 N -0.299 5.299 5 C 0.031 3.969 6 C -0.070 4.070 7 C 0.615 3.385 8 O -0.552 6.552 9 N -0.709 5.709 10 C 0.119 3.881 11 C 0.136 3.864 12 H 0.083 0.917 13 C -0.157 4.157 14 N -0.711 5.711 15 C 0.541 3.459 16 O -0.555 6.555 17 C -0.113 4.113 18 S -0.171 6.171 19 C -0.529 4.529 20 H 0.061 0.939 21 C 0.046 3.954 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.261 1.261 25 H -0.261 1.261 26 H -0.236 1.236 27 N -0.256 5.256 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.112 0.888 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.226 0.774 34 H 0.411 0.589 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.414 0.586 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.016 5.998 20.353 24.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.002 3.998 3 N -0.038 5.038 4 N -0.138 5.138 5 C -0.152 4.152 6 C -0.231 4.231 7 C 0.399 3.601 8 O -0.429 6.429 9 N -0.360 5.360 10 C -0.004 4.004 11 C 0.032 3.968 12 H 0.101 0.899 13 C -0.216 4.216 14 N -0.366 5.366 15 C 0.326 3.674 16 O -0.433 6.433 17 C -0.264 4.264 18 S 0.056 5.944 19 C -0.677 4.677 20 H 0.079 0.921 21 C -0.160 4.160 22 N -0.556 5.556 23 Si 0.736 3.264 24 H -0.186 1.186 25 H -0.186 1.186 26 H -0.160 1.160 27 N -0.105 5.105 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.243 0.757 34 H 0.248 0.752 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.251 0.749 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.194 4.753 19.427 24.525 hybrid contribution -1.526 0.471 0.244 1.616 sum 12.668 5.224 19.671 23.974 Atomic orbital electron populations 1.22174 0.92335 1.05469 1.02561 1.22594 0.96664 0.72433 1.08061 1.48766 1.42202 1.14337 0.98544 1.74022 1.17944 1.05862 1.15977 1.25221 1.00838 0.95646 0.93542 1.23056 1.10965 0.93772 0.95345 1.16603 0.77063 0.84695 0.81716 1.90805 1.48604 1.27609 1.75849 1.45834 1.66904 1.18298 1.04980 1.21830 1.03243 0.89229 0.86108 1.21244 0.83531 0.98095 0.93951 0.89897 1.22077 1.03850 0.96924 0.98713 1.45883 1.11164 1.45938 1.33618 1.19853 0.89214 0.78193 0.80104 1.90703 1.47182 1.58187 1.47202 1.23282 0.97766 1.02893 1.02493 1.84678 1.10978 1.57706 1.41066 1.22470 0.92550 1.32041 1.20591 0.92111 1.25565 0.96436 0.95520 0.98452 1.70025 1.14405 1.34970 1.36217 0.85867 0.80357 0.80737 0.79425 1.18595 1.18555 1.15962 1.74372 1.14824 1.04560 1.16751 0.91970 0.92974 0.86936 0.85698 0.84675 0.75723 0.75244 0.89070 0.88303 0.93682 0.90638 0.89193 0.74929 0.87021 0.87093 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 10.24 71.98 0.74 -1.01 16 2 C 0.12 1.26 7.24 86.38 0.63 1.88 16 3 N -0.13 -2.44 3.94 -187.49 -0.74 -3.18 16 4 N -0.30 -5.80 12.01 -56.16 -0.67 -6.47 16 5 C 0.03 0.58 12.04 85.46 1.03 1.61 16 6 C -0.07 -1.48 7.21 42.24 0.30 -1.17 16 7 C 0.62 13.11 7.83 86.78 0.68 13.79 16 8 O -0.55 -14.02 16.95 -3.89 -0.07 -14.08 16 9 N -0.71 -12.45 5.39 -466.02 -2.51 -14.96 16 10 C 0.12 1.70 5.23 86.38 0.45 2.15 16 11 C 0.14 2.36 2.73 44.99 0.12 2.48 16 12 H 0.08 1.75 7.58 -2.38 -0.02 1.73 16 13 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 14 N -0.71 -14.56 4.52 -442.53 -2.00 -16.56 16 15 C 0.54 16.86 7.81 87.66 0.68 17.54 16 16 O -0.56 -21.74 15.53 -3.04 -0.05 -21.78 16 17 C -0.11 -4.03 6.16 71.24 0.44 -3.60 16 18 S -0.17 -8.33 18.55 -56.49 -1.05 -9.38 16 19 C -0.53 -30.17 10.04 67.95 0.68 -29.49 16 20 H 0.06 3.67 8.03 -2.91 -0.02 3.65 16 21 C 0.05 2.63 5.50 84.86 0.47 3.10 16 22 N -0.92 -55.24 13.97 21.65 0.30 -54.93 16 23 Si 0.91 44.16 27.74 68.60 1.90 46.06 16 24 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 25 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 26 H -0.24 -11.33 6.74 99.48 0.67 -10.66 16 27 N -0.26 -5.40 11.84 -48.16 -0.57 -5.97 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.14 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.23 3.07 8.06 -2.91 -0.02 3.04 16 34 H 0.41 7.50 7.91 -92.70 -0.73 6.77 16 35 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.41 6.53 8.60 -92.71 -0.80 5.73 16 41 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 42 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 43 H 0.28 15.38 8.31 -92.70 -0.77 14.61 16 Total: -1.00 -78.05 389.08 0.94 -77.11 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -0.52 Total: 18.67 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 6.91 Total: 5.49 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -6.19 Total: -102.09 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.11 Total: -35.87 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.06 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.05 Total: -9.38 kcal Total: -78.05 0.94 -77.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001285710721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.467 kcal (2) G-P(sol) polarization free energy of solvation -78.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds