Wall clock time and date at job start Sat Apr 11 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34599 * 125.79812 * 2 1 4 4 C 1.37854 * 107.41022 * 180.02562 * 3 2 1 5 5 C 1.47553 * 126.38191 * 180.02562 * 4 3 2 6 6 N 1.29151 * 125.87113 * 0.02562 * 5 4 3 7 7 O 1.41386 * 112.86213 * 179.65798 * 6 5 4 8 8 C 1.44203 * 107.60020 * 17.50034 * 7 6 5 9 9 H 1.09001 * 110.97205 * 216.43158 * 8 7 6 10 10 C 1.50699 * 110.97307 * 92.69792 * 8 7 6 11 11 O 1.21274 * 120.00143 * 356.45429 * 10 8 7 12 12 N 1.34778 * 120.00175 * 176.45292 * 10 8 7 13 13 C 1.39267 * 119.99900 * 174.82916 * 12 10 8 14 14 C 1.39670 * 119.57216 * 185.70265 * 13 12 10 15 15 C 1.38657 * 119.49707 * 179.97438 * 14 13 12 16 16 C 1.38347 * 118.66450 * 359.97438 * 15 14 13 17 17 C 1.40570 * 119.13540 * 0.02562 * 16 15 14 18 18 C 1.41336 * 119.78996 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00258 * 5.69288 * 18 17 16 20 20 C 1.40033 * 120.00086 * 185.69129 * 18 17 16 21 21 N 1.30747 * 119.99949 * 354.91751 * 20 18 17 22 22 Si 1.86789 * 120.00209 * 174.92226 * 20 18 17 23 23 H 1.48500 * 109.47262 * 94.99519 * 22 20 18 24 24 H 1.48503 * 109.47331 * 215.00047 * 22 20 18 25 25 H 1.48502 * 109.46911 * 334.99672 * 22 20 18 26 26 N 1.31902 * 119.57595 * 5.43337 * 13 12 10 27 27 C 1.51696 * 125.87305 * 179.71129 * 5 4 3 28 28 C 1.41186 * 107.24479 * 359.97438 * 4 3 2 29 29 N 1.30537 * 108.08726 * 0.26989 * 28 4 3 30 30 H 1.08994 * 109.47170 * 89.99539 * 1 2 3 31 31 H 1.09000 * 109.47127 * 209.99888 * 1 2 3 32 32 H 1.09003 * 109.46753 * 329.99744 * 1 2 3 33 33 H 1.08005 * 126.29259 * 359.97438 * 3 2 1 34 34 H 0.96999 * 119.99918 * 354.83506 * 12 10 8 35 35 H 1.07999 * 120.25307 * 359.95999 * 14 13 12 36 36 H 1.07996 * 120.66611 * 179.97438 * 15 14 13 37 37 H 1.08006 * 120.42863 * 179.97438 * 16 15 14 38 38 H 0.97003 * 120.00118 * 179.97438 * 21 20 18 39 39 H 1.08994 * 110.78907 * 282.89144 * 27 5 4 40 40 H 1.08996 * 110.78817 * 46.35773 * 27 5 4 41 41 H 1.07994 * 125.95782 * 180.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2523 1.0917 0.0000 4 6 3.5605 0.6569 -0.0006 5 6 4.7658 1.5080 -0.0003 6 7 4.7802 2.7995 0.0011 7 8 6.0891 3.3342 0.0088 8 6 6.9907 2.2859 -0.4006 9 1 7.9331 2.3472 0.1437 10 6 7.2267 2.3280 -1.8884 11 8 6.6321 3.1323 -2.5742 12 7 8.0985 1.4717 -2.4570 13 6 8.2373 1.4368 -3.8423 14 6 9.0526 0.4664 -4.4291 15 6 9.1893 0.4328 -5.8085 16 6 8.5077 1.3686 -6.5659 17 6 7.7024 2.3199 -5.9160 18 6 6.9995 3.2820 -6.6763 19 1 7.0078 3.2290 -7.7549 20 6 6.2923 4.3039 -6.0309 21 7 6.1992 4.3117 -4.7268 22 14 5.4820 5.6559 -7.0332 23 1 4.0588 5.3076 -7.2750 24 1 5.5581 6.9381 -6.2879 25 1 6.1849 5.7969 -8.3337 26 7 7.5928 2.3171 -4.5835 27 6 6.2010 1.0168 0.0053 28 6 3.5323 -0.7547 -0.0003 29 7 2.2836 -1.1352 -0.0055 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.9202 2.1194 -0.0004 34 1 8.6292 0.8797 -1.9013 35 1 9.5730 -0.2521 -3.8132 36 1 9.8151 -0.3090 -6.2821 37 1 8.5939 1.3687 -7.6426 38 1 5.7096 5.0199 -4.2798 39 1 6.4907 0.6798 1.0005 40 1 6.3412 0.2236 -0.7291 41 1 4.3937 -1.4062 -0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438837310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:17 Heat of formation + Delta-G solvation = 107.790889 kcal Electronic energy + Delta-G solvation = -28977.338372 eV Core-core repulsion = 24861.559848 eV Total energy + Delta-G solvation = -4115.778524 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.29625 -41.55123 -40.33628 -38.83653 -35.95867 -35.02528 -34.83984 -33.71669 -32.37655 -32.08962 -30.77138 -30.53829 -27.93462 -27.50434 -25.75645 -23.65670 -23.54440 -23.00363 -21.92318 -21.12674 -20.50728 -19.64670 -18.36903 -18.29420 -17.81048 -16.97915 -16.53926 -16.48487 -16.26605 -16.13867 -15.99524 -15.68561 -15.41584 -15.21940 -14.76100 -14.38734 -14.24796 -14.05150 -13.94709 -13.72744 -13.54879 -13.43224 -13.14184 -12.97641 -12.74562 -12.72403 -12.58179 -12.32476 -11.93034 -11.80720 -11.70963 -11.50789 -11.41045 -10.88106 -10.58505 -10.40016 -9.90669 -9.34981 -9.04881 -8.83222 -8.07621 -6.43453 0.26455 0.89855 0.97179 1.24127 1.35467 1.43964 1.47505 1.51272 1.90066 2.02665 2.17161 2.23353 2.36890 2.96837 3.00001 3.50923 3.51662 3.72793 3.74445 3.85959 4.04825 4.18188 4.23119 4.38072 4.39383 4.52943 4.56269 4.58760 4.67050 4.75811 4.82224 4.89454 4.96210 4.99930 5.07179 5.25092 5.43914 5.68182 5.83934 5.84614 5.92798 6.12448 6.36467 6.42839 6.54256 6.72486 6.83805 7.06544 7.65054 8.34468 8.54057 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009975 B = 0.003610 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.420881 B = 7754.414153 C = 8649.956744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.365 5.365 3 C 0.107 3.893 4 C -0.224 4.224 5 C 0.174 3.826 6 N -0.339 5.339 7 O -0.202 6.202 8 C 0.031 3.969 9 H 0.174 0.826 10 C 0.443 3.557 11 O -0.446 6.446 12 N -0.646 5.646 13 C 0.349 3.651 14 C -0.338 4.338 15 C -0.035 4.035 16 C -0.330 4.330 17 C 0.238 3.762 18 C -0.469 4.469 19 H 0.085 0.915 20 C 0.012 3.988 21 N -0.693 5.693 22 Si 0.971 3.029 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.252 1.252 26 N -0.513 5.513 27 C -0.123 4.123 28 C 0.092 3.908 29 N -0.321 5.321 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.117 0.883 33 H 0.197 0.803 34 H 0.424 0.576 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.103 0.897 38 H 0.267 0.733 39 H 0.161 0.839 40 H 0.118 0.882 41 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.094 -10.827 15.187 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.144 5.144 3 C -0.046 4.046 4 C -0.237 4.237 5 C -0.016 4.016 6 N -0.084 5.084 7 O -0.217 6.217 8 C -0.031 4.031 9 H 0.191 0.809 10 C 0.225 3.775 11 O -0.311 6.311 12 N -0.298 5.298 13 C 0.110 3.890 14 C -0.364 4.364 15 C -0.059 4.059 16 C -0.353 4.353 17 C 0.112 3.888 18 C -0.500 4.500 19 H 0.103 0.897 20 C -0.213 4.213 21 N -0.312 5.312 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.175 1.175 26 N -0.232 5.232 27 C -0.162 4.162 28 C -0.096 4.096 29 N -0.142 5.142 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.135 0.865 33 H 0.214 0.786 34 H 0.263 0.737 35 H 0.156 0.844 36 H 0.156 0.844 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.179 0.821 40 H 0.137 0.863 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.701 -9.302 15.389 19.976 hybrid contribution 1.590 0.082 -0.970 1.864 sum -7.111 -9.220 14.419 18.533 Atomic orbital electron populations 1.22365 0.71086 1.06738 1.05007 1.48753 1.08516 1.03018 1.54078 1.23365 0.90501 0.94576 0.96181 1.18162 0.89593 0.92807 1.23152 1.23697 0.95226 0.91078 0.91559 1.78436 0.99894 1.11958 1.18128 1.91251 1.11530 1.33265 1.85697 1.23872 0.98685 0.89067 0.91508 0.80889 1.21952 0.81544 0.82583 0.91396 1.91194 1.43960 1.33092 1.62866 1.43262 1.42027 1.40466 1.04041 1.19141 0.92595 0.91945 0.85325 1.21004 1.13098 1.06648 0.95606 1.21068 0.95502 0.95936 0.93432 1.21810 1.09880 1.04275 0.99310 1.18850 0.90290 0.91439 0.88220 1.19892 1.26913 1.08834 0.94346 0.89660 1.27031 0.96862 1.01201 0.96231 1.70518 1.24797 1.26942 1.08974 0.85363 0.78887 0.77236 0.79282 1.19186 1.20032 1.17489 1.68648 1.24797 1.23832 1.05928 1.23056 0.87424 0.97938 1.07735 1.24466 0.95989 0.92946 0.96220 1.77174 1.02261 1.08949 1.25788 0.89585 0.87765 0.86479 0.78645 0.73710 0.84372 0.84358 0.87890 0.92272 0.82149 0.86348 0.76204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.45 127.77 1.46 2.34 16 2 N -0.36 -7.18 3.99 -367.66 -1.47 -8.64 16 3 C 0.11 2.39 11.47 84.18 0.97 3.35 16 4 C -0.22 -5.49 6.12 -20.19 -0.12 -5.61 16 5 C 0.17 4.87 7.29 45.73 0.33 5.20 16 6 N -0.34 -12.19 12.49 -42.26 -0.53 -12.71 16 7 O -0.20 -7.63 11.82 -20.29 -0.24 -7.87 16 8 C 0.03 0.89 4.23 30.50 0.13 1.02 16 9 H 0.17 3.29 8.14 -2.39 -0.02 3.28 16 10 C 0.44 18.11 7.11 87.66 0.62 18.73 16 11 O -0.45 -24.60 12.43 15.00 0.19 -24.42 16 12 N -0.65 -23.77 5.38 -308.37 -1.66 -25.43 16 13 C 0.35 16.67 7.43 133.25 0.99 17.66 16 14 C -0.34 -13.98 9.96 22.72 0.23 -13.75 16 15 C -0.04 -1.51 10.15 22.40 0.23 -1.29 16 16 C -0.33 -16.83 9.83 22.86 0.22 -16.61 16 17 C 0.24 14.02 6.54 40.19 0.26 14.28 16 18 C -0.47 -27.57 9.13 23.47 0.21 -27.36 16 19 H 0.09 4.69 7.85 -2.91 -0.02 4.67 16 20 C 0.01 0.67 5.49 85.29 0.47 1.14 16 21 N -0.69 -42.23 9.08 21.84 0.20 -42.03 16 22 Si 0.97 42.75 29.56 68.60 2.03 44.77 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 26 N -0.51 -30.01 5.74 -186.37 -1.07 -31.08 16 27 C -0.12 -2.50 6.45 30.81 0.20 -2.30 16 28 C 0.09 1.89 11.87 85.61 1.02 2.91 16 29 N -0.32 -7.31 12.51 -56.30 -0.70 -8.01 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.20 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.42 10.37 8.70 -92.71 -0.81 9.56 16 35 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 36 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 38 H 0.27 15.68 8.29 -92.71 -0.77 14.91 16 39 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.12 2.16 7.92 -2.39 -0.02 2.14 16 41 H 0.22 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -92.71 362.61 4.25 -88.45 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.29 Total: 27.26 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 7.22 Total: -0.29 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -5.23 Total: -127.92 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.05 Total: -32.28 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -92.71 4.25 -88.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438837310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.246 kcal (2) G-P(sol) polarization free energy of solvation -92.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds