Wall clock time and date at job start Sat Apr 11 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 N 1.46905 * 109.46991 * 174.99948 * 4 2 1 6 6 C 1.46897 * 111.00099 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46777 * 180.02562 * 6 5 4 8 8 O 1.21287 * 120.00660 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99697 * 180.02562 * 7 6 5 10 10 C 1.37098 * 119.99633 * 180.02562 * 9 7 6 11 11 H 1.07997 * 120.00481 * 359.97438 * 10 9 7 12 12 C 1.38961 * 119.99664 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99703 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99950 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47135 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47593 * 119.99660 * 14 12 10 17 17 H 1.48504 * 109.47083 * 239.99987 * 14 12 10 18 18 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 19 19 C 1.34781 * 119.99920 * 84.99933 * 18 2 1 20 20 O 1.21579 * 120.00027 * 0.02562 * 19 18 2 21 21 C 1.47575 * 119.99739 * 179.97438 * 19 18 2 22 22 C 1.39726 * 120.14323 * 359.73004 * 21 19 18 23 23 C 1.37742 * 119.90464 * 179.76801 * 22 21 19 24 24 C 1.38753 * 120.18879 * 0.50422 * 23 22 21 25 25 F 1.35099 * 119.85609 * 179.76529 * 24 23 22 26 26 C 1.38496 * 120.28817 * 359.74831 * 24 23 22 27 27 C 1.38199 * 120.09324 * 359.97438 * 26 24 23 28 28 F 1.35093 * 120.09779 * 179.97438 * 27 26 24 29 29 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 30 30 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 31 31 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47903 * 294.99740 * 4 2 1 33 33 H 1.09002 * 109.47016 * 55.00506 * 4 2 1 34 34 H 1.00905 * 110.99669 * 56.04618 * 5 4 2 35 35 H 1.08995 * 109.47498 * 299.99968 * 6 5 4 36 36 H 1.08996 * 109.46935 * 60.00067 * 6 5 4 37 37 H 0.97000 * 120.00201 * 359.97438 * 9 7 6 38 38 H 0.96998 * 119.99702 * 180.02562 * 13 12 10 39 39 H 0.96998 * 120.00176 * 265.00572 * 18 2 1 40 40 H 1.07998 * 120.04816 * 359.97438 * 22 21 19 41 41 H 1.08001 * 119.90227 * 180.22655 * 23 22 21 42 42 H 1.07997 * 119.95785 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0302 -1.5159 2.3763 7 6 5.5316 -1.6043 2.2809 8 8 6.1067 -1.1395 1.3195 9 7 6.2353 -2.2010 3.2635 10 6 7.6012 -2.2810 3.1769 11 1 8.1133 -1.8663 2.3213 12 6 8.3266 -2.8966 4.1897 13 7 7.7034 -3.4015 5.2306 14 14 10.1877 -3.0050 4.0722 15 1 10.6422 -2.3650 2.8115 16 1 10.7986 -2.3057 5.2310 17 1 10.6020 -4.4310 4.0800 18 7 2.0184 -0.6906 -1.1961 19 6 2.1472 -0.0182 -2.3571 20 8 1.8584 1.1615 -2.4116 21 6 2.6397 -0.7138 -3.5618 22 6 2.9787 -2.0680 -3.5009 23 6 3.4334 -2.7135 -4.6295 24 6 3.5656 -2.0204 -5.8242 25 9 4.0166 -2.6591 -6.9259 26 6 3.2368 -0.6768 -5.8923 27 6 2.7740 -0.0188 -4.7686 28 9 2.4538 1.2919 -4.8348 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2952 34 1 3.9280 0.0826 1.0825 35 1 3.7557 -0.9588 3.2721 36 1 3.6093 -2.5199 2.4296 37 1 5.7754 -2.5731 4.0322 38 1 8.2098 -3.8309 5.9377 39 1 2.2491 -1.6317 -1.1525 40 1 2.8813 -2.6085 -2.5710 41 1 3.6920 -3.7611 -4.5832 42 1 3.3413 -0.1426 -6.8251 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569094817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:45 Heat of formation + Delta-G solvation = -159.481904 kcal Electronic energy + Delta-G solvation = -28649.920973 eV Core-core repulsion = 24071.863444 eV Total energy + Delta-G solvation = -4578.057529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.15011 -50.09217 -41.20932 -40.12308 -39.30632 -37.74543 -36.01967 -35.15519 -33.26575 -32.98750 -31.81386 -30.99476 -28.93285 -26.70141 -25.34891 -24.55122 -24.16243 -22.43284 -21.59662 -21.01566 -19.89538 -19.49511 -18.83588 -18.37238 -17.77152 -17.35598 -17.17211 -16.76163 -16.65685 -16.47478 -16.35187 -16.08940 -15.94848 -15.71636 -15.54087 -15.20945 -15.10186 -14.79965 -14.53148 -14.15161 -14.03863 -13.57401 -13.51719 -13.38982 -13.06432 -13.01421 -12.95933 -12.78114 -12.68792 -12.58312 -12.38927 -12.11538 -11.83032 -11.49732 -11.08426 -10.34373 -10.29162 -10.12714 -9.99227 -9.82829 -9.33382 -8.45829 -5.93779 -0.59552 -0.10758 1.37076 1.42865 1.56316 1.60741 2.07617 2.08903 2.29935 2.46951 2.67781 2.91621 3.20286 3.22260 3.43231 3.51118 3.62384 3.77381 3.84518 3.99913 4.18829 4.34794 4.40001 4.55085 4.56917 4.60044 4.62970 4.68092 4.75382 4.79694 4.81801 4.89674 4.91047 5.06864 5.29749 5.42695 5.50502 5.56589 5.89037 6.11100 6.32135 6.52175 6.62352 7.15086 7.18308 7.59442 8.15130 8.71735 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010445 B = 0.002519 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.025326 B =11113.097507 C =13009.040720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.063 0.937 4 C 0.054 3.946 5 N -0.679 5.679 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.624 6.624 9 N -0.574 5.574 10 C -0.331 4.331 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.989 3.011 15 H -0.275 1.275 16 H -0.272 1.272 17 H -0.270 1.270 18 N -0.689 5.689 19 C 0.555 3.445 20 O -0.576 6.576 21 C -0.197 4.197 22 C -0.015 4.015 23 C -0.160 4.160 24 C 0.154 3.846 25 F -0.127 7.127 26 C -0.201 4.201 27 C 0.163 3.837 28 F -0.127 7.127 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.103 0.897 34 H 0.339 0.661 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.414 0.586 40 H 0.174 0.826 41 H 0.179 0.821 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.517 -1.471 -14.215 21.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.075 4.075 5 N -0.310 5.310 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.510 6.510 9 N -0.212 5.212 10 C -0.461 4.461 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.813 3.187 15 H -0.199 1.199 16 H -0.198 1.198 17 H -0.195 1.195 18 N -0.340 5.340 19 C 0.343 3.657 20 O -0.457 6.457 21 C -0.201 4.201 22 C -0.034 4.034 23 C -0.178 4.178 24 C 0.134 3.866 25 F -0.105 7.105 26 C -0.220 4.220 27 C 0.143 3.857 28 F -0.105 7.105 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.121 0.879 34 H 0.157 0.843 35 H 0.084 0.916 36 H 0.131 0.869 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.252 0.748 40 H 0.191 0.809 41 H 0.196 0.804 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.284 -0.983 -15.097 22.227 hybrid contribution 0.958 0.511 0.829 1.366 sum -15.326 -0.472 -14.268 20.945 Atomic orbital electron populations 1.22063 0.92960 1.03487 1.02593 1.21025 0.95011 0.96342 0.83588 0.91901 1.22394 0.86836 1.02367 0.95881 1.60087 1.05338 1.26244 1.39361 1.21548 0.90163 1.01963 0.92937 1.20974 0.90749 0.82302 0.83475 1.90510 1.72881 1.52981 1.34663 1.41939 1.06758 1.51784 1.20688 1.19666 0.83194 1.36646 1.06597 0.90525 1.25979 1.04642 0.95919 0.94613 1.69666 1.38099 1.38592 1.09747 0.84922 0.77250 0.78323 0.78172 1.19947 1.19783 1.19528 1.45664 1.65470 1.14679 1.08197 1.18140 0.77567 0.86068 0.83932 1.90804 1.52299 1.16925 1.85701 1.20204 1.10025 0.96534 0.93315 1.21366 0.91343 0.90800 0.99887 1.21493 1.02727 1.03276 0.90331 1.17617 0.95590 0.89696 0.83730 1.91565 1.85963 1.81414 1.51542 1.21117 1.06210 0.94732 0.99979 1.17550 0.96463 0.78275 0.93440 1.91570 1.89577 1.32553 1.96799 0.89892 0.93762 0.90308 0.91976 0.87890 0.84333 0.91627 0.86858 0.76924 0.91345 0.74782 0.80879 0.80364 0.81330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.48 71.98 0.68 -1.65 16 2 C 0.15 2.85 2.81 44.99 0.13 2.98 16 3 H 0.06 1.59 7.58 -2.39 -0.02 1.57 16 4 C 0.05 0.95 5.24 86.30 0.45 1.41 16 5 N -0.68 -18.22 5.85 -517.94 -3.03 -21.25 16 6 C 0.07 1.97 6.17 85.56 0.53 2.49 16 7 C 0.44 19.59 7.82 87.66 0.69 20.27 16 8 O -0.62 -33.34 15.78 -3.05 -0.05 -33.38 16 9 N -0.57 -28.23 5.29 -306.97 -1.62 -29.85 16 10 C -0.33 -18.40 9.68 84.04 0.81 -17.58 16 11 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 12 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 13 N -0.92 -48.48 13.05 21.67 0.28 -48.20 16 14 Si 0.99 42.27 29.55 68.60 2.03 44.29 16 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 18 N -0.69 -14.26 4.75 -445.67 -2.12 -16.38 16 19 C 0.56 14.89 7.73 86.71 0.67 15.56 16 20 O -0.58 -20.13 15.00 -3.96 -0.06 -20.19 16 21 C -0.20 -4.44 5.88 -20.05 -0.12 -4.56 16 22 C -0.02 -0.24 9.53 22.51 0.21 -0.02 16 23 C -0.16 -2.16 10.01 22.28 0.22 -1.94 16 24 C 0.15 2.49 7.30 22.45 0.16 2.66 16 25 F -0.13 -2.10 17.26 44.97 0.78 -1.32 16 26 C -0.20 -3.65 9.99 22.32 0.22 -3.43 16 27 C 0.16 3.89 7.28 22.66 0.17 4.05 16 28 F -0.13 -3.70 15.55 44.97 0.70 -3.00 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.34 10.71 8.43 -89.69 -0.76 9.96 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.40 18.39 7.90 -92.71 -0.73 17.66 16 38 H 0.28 13.66 8.31 -92.71 -0.77 12.89 16 39 H 0.41 6.72 6.63 -92.71 -0.61 6.10 16 40 H 0.17 1.77 6.40 -2.91 -0.02 1.75 16 41 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 42 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -74.64 373.34 1.21 -73.42 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: -0.99 Total: 35.77 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 5.30 Total: 20.08 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -6.49 Total: -115.68 kcal Atomic # 8 Polarization: -53.46 SS G_CDS: -0.11 Total: -53.57 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 1.48 Total: -4.32 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.29 kcal Total: -74.64 1.21 -73.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569094817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.057 kcal (2) G-P(sol) polarization free energy of solvation -74.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds