Wall clock time and date at job start Sat Apr 11 2020 06:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34776 * 120.00089 * 2 1 4 4 O 1.21285 * 120.00210 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00052 * 0.02562 * 3 2 1 6 6 S 1.80999 * 109.47378 * 179.97438 * 5 3 2 7 7 C 1.76203 * 99.99968 * 180.02562 * 6 5 3 8 8 H 1.08003 * 120.00052 * 359.97438 * 7 6 5 9 9 C 1.38799 * 119.99927 * 179.97438 * 7 6 5 10 10 N 1.31630 * 119.99559 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00065 * 0.02562 * 9 7 6 12 12 H 1.48502 * 109.47396 * 89.99636 * 11 9 7 13 13 H 1.48502 * 109.47265 * 209.99925 * 11 9 7 14 14 H 1.48502 * 109.46903 * 329.99443 * 11 9 7 15 15 C 1.46507 * 120.00078 * 180.02562 * 2 1 3 16 16 C 1.53506 * 114.16975 * 299.99478 * 15 2 1 17 17 N 1.47480 * 87.92979 * 87.81313 * 16 15 2 18 18 C 1.46899 * 110.99942 * 138.70062 * 17 16 15 19 19 C 1.50702 * 109.47192 * 169.99977 * 18 17 16 20 20 N 1.30734 * 125.53993 * 0.20636 * 19 18 17 21 21 C 1.34450 * 109.94520 * 180.27702 * 20 19 18 22 22 O 1.21721 * 125.92127 * 179.68693 * 21 20 19 23 23 N 1.34992 * 108.14918 * 359.71698 * 21 20 19 24 24 C 1.46501 * 126.85738 * 180.02562 * 23 21 20 25 25 N 1.35159 * 125.53840 * 179.97438 * 19 18 17 26 26 H 0.97001 * 126.65353 * 0.02562 * 25 19 18 27 27 C 1.47479 * 87.83500 * 27.01108 * 17 16 15 28 28 H 1.09003 * 109.46975 * 269.99656 * 1 2 3 29 29 H 1.08992 * 109.47680 * 29.99606 * 1 2 3 30 30 H 1.08999 * 109.47256 * 150.00358 * 1 2 3 31 31 H 1.08998 * 109.46899 * 299.99930 * 5 3 2 32 32 H 1.09006 * 109.47112 * 59.99458 * 5 3 2 33 33 H 0.97004 * 119.99407 * 180.02562 * 10 9 7 34 34 H 1.09006 * 113.25528 * 167.04439 * 15 2 1 35 35 H 1.08996 * 113.48141 * 333.04867 * 16 15 2 36 36 H 1.09000 * 113.52889 * 202.58308 * 16 15 2 37 37 H 1.09000 * 109.47232 * 49.99935 * 18 17 16 38 38 H 1.08999 * 109.47365 * 289.99794 * 18 17 16 39 39 H 1.09002 * 109.46975 * 269.97362 * 24 23 21 40 40 H 1.09003 * 109.47271 * 29.97983 * 24 23 21 41 41 H 1.08997 * 109.47060 * 149.97740 * 24 23 21 42 42 H 1.09000 * 113.47934 * 87.75556 * 27 17 16 43 43 H 1.09007 * 113.47483 * 218.22181 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5615 3.8481 0.0012 7 6 1.4414 5.2082 0.0026 8 1 0.3761 5.0305 0.0024 9 6 1.9281 6.5081 0.0039 10 7 1.0912 7.5241 0.0044 11 14 3.7706 6.8155 0.0035 12 1 4.2583 6.8985 -1.3967 13 1 4.0596 8.0921 0.7049 14 1 4.4586 5.7002 0.7021 15 6 2.1975 -1.2688 -0.0006 16 6 1.9054 -2.1637 1.2120 17 7 0.7753 -2.7314 0.4533 18 6 0.6942 -4.1863 0.6394 19 6 -0.5999 -4.6957 0.0589 20 7 -1.5114 -3.9627 -0.5250 21 6 -2.5382 -4.7359 -0.9194 22 8 -3.5440 -4.3521 -1.4876 23 7 -2.2605 -6.0113 -0.5755 24 6 -3.1007 -7.1880 -0.8119 25 7 -1.0047 -5.9852 0.0535 26 1 -0.5236 -6.7447 0.4176 27 6 1.5088 -2.3967 -0.7816 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7584 2.5302 -0.8891 32 1 0.7589 2.5298 0.8908 33 1 1.4314 8.4325 0.0050 34 1 3.2579 -1.1534 -0.2250 35 1 1.5981 -1.6080 2.0979 36 1 2.6950 -2.8857 1.4201 37 1 0.7317 -4.4191 1.7036 38 1 1.5327 -4.6647 0.1331 39 1 -3.7673 -7.3351 0.0379 40 1 -3.6914 -7.0371 -1.7154 41 1 -2.4683 -8.0674 -0.9339 42 1 2.1931 -3.1806 -1.1063 43 1 0.8654 -2.0384 -1.5852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569483329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:49 Heat of formation + Delta-G solvation = 92.046925 kcal Electronic energy + Delta-G solvation = -26757.196901 eV Core-core repulsion = 22776.179619 eV Total energy + Delta-G solvation = -3981.017282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.66534 -41.00546 -38.73483 -37.55815 -35.12631 -34.41117 -32.37898 -32.10733 -31.19638 -29.11145 -27.42469 -26.79669 -26.18313 -25.56480 -24.69162 -22.11670 -21.57122 -20.89537 -18.93949 -18.59853 -17.68327 -17.13376 -17.06050 -16.66169 -16.25309 -15.92786 -15.64633 -15.51718 -15.13898 -14.97598 -14.83500 -14.04783 -13.87210 -13.50362 -13.44743 -13.36602 -13.23231 -12.76701 -12.68696 -12.53438 -12.20943 -11.96304 -11.88050 -11.53392 -11.36815 -11.19912 -11.11748 -10.95961 -10.52603 -10.47219 -10.14050 -9.80795 -9.52402 -9.27119 -8.94773 -8.92947 -8.49634 -8.42511 -6.85540 -6.22905 -3.94215 0.85019 0.94330 2.74114 2.94373 2.99364 3.12732 3.21486 3.37454 3.50168 3.54567 3.66314 3.73330 4.16889 4.26129 4.35041 4.38295 4.41424 4.46742 4.63257 4.73801 4.86415 4.89541 4.91082 5.00684 5.15877 5.16596 5.33962 5.41289 5.45964 5.52437 5.59382 5.72636 5.78145 5.81593 5.92938 6.10245 6.20091 6.40249 6.63603 6.69347 7.55199 7.60447 7.89724 8.00284 8.48677 8.49300 9.23226 10.86361 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.025307 B = 0.002040 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.152843 B =13718.990916 C =14607.248524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.597 5.597 3 C 0.535 3.465 4 O -0.522 6.522 5 C -0.119 4.119 6 S -0.146 6.146 7 C -0.519 4.519 8 H 0.089 0.911 9 C 0.095 3.905 10 N -0.881 5.881 11 Si 0.857 3.143 12 H -0.268 1.268 13 H -0.275 1.275 14 H -0.235 1.235 15 C 0.125 3.875 16 C -0.016 4.016 17 N -0.442 5.442 18 C 0.083 3.917 19 C 0.402 3.598 20 N -0.537 5.537 21 C 0.632 3.368 22 O -0.533 6.533 23 N -0.450 5.450 24 C 0.110 3.890 25 N -0.504 5.504 26 H 0.444 0.556 27 C -0.012 4.012 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.270 0.730 34 H 0.117 0.883 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.114 0.886 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.913 -36.039 2.739 36.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.331 5.331 3 C 0.323 3.677 4 O -0.397 6.397 5 C -0.269 4.269 6 S 0.081 5.919 7 C -0.667 4.667 8 H 0.107 0.893 9 C -0.114 4.114 10 N -0.517 5.517 11 Si 0.682 3.318 12 H -0.193 1.193 13 H -0.200 1.200 14 H -0.159 1.159 15 C 0.019 3.981 16 C -0.146 4.146 17 N -0.165 5.165 18 C -0.048 4.048 19 C 0.127 3.873 20 N -0.285 5.285 21 C 0.331 3.669 22 O -0.403 6.403 23 N -0.281 5.281 24 C -0.032 4.032 25 N -0.237 5.237 26 H 0.290 0.710 27 C -0.142 4.142 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.886 -34.694 2.192 34.774 hybrid contribution -0.053 -1.560 0.271 1.584 sum -0.939 -36.254 2.463 36.349 Atomic orbital electron populations 1.21877 0.78112 1.03844 1.02389 1.47420 1.07364 1.03894 1.74411 1.20340 0.87831 0.84592 0.74888 1.90675 1.13769 1.86917 1.48354 1.23304 1.02973 0.94822 1.05839 1.84722 1.12126 0.97650 1.97431 1.22323 0.94934 0.90859 1.58548 0.89336 1.24720 0.98498 0.94895 0.93277 1.69948 1.34739 0.98836 1.48208 0.86727 0.85454 0.79736 0.79869 1.19261 1.20038 1.15932 1.21828 0.97776 0.83467 0.95043 1.24447 0.92459 0.97822 0.99839 1.69010 1.34655 1.07272 1.05516 1.21400 0.88833 0.92924 1.01673 1.23750 0.95423 0.79022 0.89124 1.71980 1.03571 1.29703 1.23255 1.18515 0.87999 0.78359 0.82007 1.90982 1.28221 1.75031 1.46109 1.49568 1.09537 1.11980 1.56998 1.21843 0.93133 0.84661 1.03528 1.44823 1.12000 1.10274 1.56559 0.70959 1.24458 0.96650 0.97513 0.95572 0.92674 0.91335 0.88994 0.88375 0.88379 0.92007 0.86522 0.88523 0.90029 0.86846 0.89590 0.91191 0.88214 0.90323 0.90050 0.88191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 9.34 59.84 0.56 1.54 16 2 N -0.60 -8.05 3.11 -173.63 -0.54 -8.59 16 3 C 0.54 9.65 7.69 -10.99 -0.08 9.56 16 4 O -0.52 -11.02 15.37 5.55 0.09 -10.93 16 5 C -0.12 -2.38 4.71 36.01 0.17 -2.21 16 6 S -0.15 -3.74 18.55 -107.50 -1.99 -5.73 16 7 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 8 H 0.09 2.71 8.03 -52.48 -0.42 2.28 16 9 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 10 N -0.88 -26.92 13.97 55.49 0.78 -26.14 16 11 Si 0.86 22.00 27.74 -169.99 -4.71 17.28 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.24 -6.01 6.74 56.52 0.38 -5.62 16 15 C 0.13 1.27 4.66 -67.72 -0.32 0.95 16 16 C -0.02 -0.11 7.31 -7.55 -0.06 -0.17 16 17 N -0.44 -3.15 4.62 -246.13 -1.14 -4.29 16 18 C 0.08 0.30 5.44 -4.98 -0.03 0.27 16 19 C 0.40 2.65 8.02 -155.11 -1.24 1.41 16 20 N -0.54 -6.40 10.83 -13.82 -0.15 -6.55 16 21 C 0.63 8.33 8.97 -87.02 -0.78 7.55 16 22 O -0.53 -9.28 17.91 5.17 0.09 -9.19 16 23 N -0.45 -3.48 4.06 -72.07 -0.29 -3.77 16 24 C 0.11 0.43 11.46 59.85 0.69 1.11 16 25 N -0.50 -2.09 7.36 32.73 0.24 -1.85 16 26 H 0.44 -0.20 8.96 -182.31 -1.63 -1.84 16 27 C -0.01 -0.09 6.73 -7.55 -0.05 -0.14 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.86 6.44 -51.93 -0.33 0.53 16 30 H 0.09 1.09 5.70 -51.93 -0.30 0.79 16 31 H 0.10 1.86 7.40 -51.92 -0.38 1.48 16 32 H 0.10 1.86 8.11 -51.91 -0.42 1.44 16 33 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 34 H 0.12 1.29 7.28 -51.93 -0.38 0.91 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.33 7.91 -51.93 -0.41 -0.08 16 37 H 0.11 0.15 8.08 -51.93 -0.42 -0.27 16 38 H 0.09 0.07 7.30 -51.93 -0.38 -0.31 16 39 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 41 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 42 H 0.08 0.40 7.42 -51.93 -0.39 0.01 16 43 H 0.10 0.96 7.27 -51.93 -0.38 0.58 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -41.81 373.25 -10.05 -51.86 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -7.11 Total: -5.44 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -0.93 Total: 7.72 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -1.10 Total: -51.19 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: 0.18 Total: -20.12 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -1.99 Total: -5.73 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -41.81 -10.05 -51.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569483329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.903 kcal (2) G-P(sol) polarization free energy of solvation -41.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds