Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47244 * 2 1 4 4 N 1.46505 * 109.47266 * 239.99819 * 2 1 3 5 5 C 1.34772 * 119.99791 * 85.00214 * 4 2 1 6 6 O 1.21285 * 120.00104 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99764 * 180.02562 * 5 4 2 8 8 S 1.81001 * 109.46962 * 179.97438 * 7 5 4 9 9 C 1.76201 * 99.99955 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00116 * 359.97438 * 9 8 7 11 11 C 1.38803 * 119.99812 * 179.97438 * 9 8 7 12 12 N 1.31625 * 120.00242 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99811 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46842 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46767 * 119.99826 * 13 11 9 16 16 H 1.48496 * 109.47215 * 239.99816 * 13 11 9 17 17 C 1.53003 * 109.47011 * 119.99884 * 2 1 3 18 18 H 1.09000 * 109.47008 * 185.00222 * 17 2 1 19 19 C 1.53001 * 109.47090 * 65.00173 * 17 2 1 20 20 N 1.46500 * 109.47319 * 304.99915 * 17 2 1 21 21 C 1.34770 * 120.00087 * 205.00048 * 20 17 2 22 22 O 1.21555 * 120.00311 * 0.02562 * 21 20 17 23 23 C 1.47807 * 119.99660 * 180.02562 * 21 20 17 24 24 C 1.40925 * 127.23189 * 179.97438 * 23 21 20 25 25 N 1.31138 * 105.77323 * 179.70542 * 24 23 21 26 26 N 1.28513 * 109.05737 * 0.26446 * 25 24 23 27 27 C 1.46505 * 124.44484 * 179.97438 * 26 25 24 28 28 N 1.28588 * 111.11631 * 0.02562 * 26 25 24 29 29 H 1.09003 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47437 * 299.99919 * 1 2 3 31 31 H 1.08994 * 109.47238 * 60.00301 * 1 2 3 32 32 H 0.97000 * 119.99493 * 264.99948 * 4 2 1 33 33 H 1.09000 * 109.47117 * 299.99421 * 7 5 4 34 34 H 1.09002 * 109.47254 * 60.00442 * 7 5 4 35 35 H 0.97003 * 120.00227 * 179.97438 * 12 11 9 36 36 H 1.09000 * 109.47235 * 299.99911 * 19 17 2 37 37 H 1.09001 * 109.47362 * 59.99966 * 19 17 2 38 38 H 1.08998 * 109.47287 * 180.02562 * 19 17 2 39 39 H 0.96999 * 119.99685 * 25.00075 * 20 17 2 40 40 H 1.08002 * 127.11735 * 359.97436 * 24 23 21 41 41 H 1.09000 * 109.47112 * 90.02086 * 27 26 25 42 42 H 1.08999 * 109.47349 * 210.02744 * 27 26 25 43 43 H 1.09003 * 109.46998 * 330.02797 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6489 -0.7289 -3.5876 8 16 2.7093 0.4340 -4.9733 9 6 3.3112 -0.6316 -6.2410 10 1 3.5207 -1.6679 -6.0210 11 6 3.5160 -0.1390 -7.5224 12 7 3.2612 1.1242 -7.7905 13 14 4.1548 -1.2685 -8.8662 14 1 4.3613 -2.6304 -8.3113 15 1 3.1662 -1.3299 -9.9726 16 1 5.4441 -0.7433 -9.3830 17 6 2.0400 -0.7212 1.2493 18 1 3.1263 -0.6443 1.2952 19 6 1.6352 -2.1955 1.1880 20 7 1.4558 -0.1036 2.4424 21 6 2.0912 -0.1937 3.6275 22 8 3.1492 -0.7871 3.7064 23 6 1.5015 0.4289 4.8314 24 6 2.0303 0.4282 6.1377 25 7 1.1750 1.1017 6.8688 26 7 0.2012 1.4894 6.1252 27 6 -0.9444 2.2695 6.6000 28 7 0.3636 1.1018 4.9099 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 3.6481 -1.1214 -3.3985 34 1 1.9760 -1.5506 -3.8325 35 1 3.4047 1.4686 -8.6859 36 1 0.5489 -2.2724 1.1421 37 1 2.0698 -2.6550 0.3003 38 1 1.9981 -2.7092 2.0782 39 1 0.6118 0.3702 2.3794 40 1 2.9517 -0.0285 6.4675 41 1 -0.7228 3.3328 6.5085 42 1 -1.8220 2.0282 6.0003 43 1 -1.1406 2.0279 7.6447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571754682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = 39.872127 kcal Electronic energy + Delta-G solvation = -26238.426406 eV Core-core repulsion = 22255.146655 eV Total energy + Delta-G solvation = -3983.279751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.11870 -40.34995 -39.24464 -36.99167 -34.35707 -34.12192 -33.12698 -32.43035 -31.29694 -29.83729 -28.53751 -28.41245 -25.51757 -25.36971 -24.17708 -22.58336 -21.42858 -20.51522 -19.95941 -18.53433 -17.84290 -17.48567 -17.45013 -16.57872 -16.16288 -15.87554 -15.27393 -15.13781 -14.99017 -14.80428 -14.61418 -14.43796 -13.96346 -13.66795 -13.51036 -13.31166 -13.17465 -12.85469 -12.57037 -12.45795 -12.39162 -12.03360 -11.91529 -11.51241 -11.24793 -11.08345 -11.06868 -11.01856 -10.92636 -10.75801 -10.57385 -9.93623 -9.81041 -9.49747 -9.40871 -9.08372 -8.98136 -8.23710 -6.50219 -6.22048 -3.92453 0.84450 1.50031 1.65394 2.55482 2.87515 3.05396 3.09163 3.21753 3.28785 3.33450 3.44946 3.72586 4.20157 4.24380 4.36444 4.41120 4.48702 4.63662 4.66733 4.69756 4.89751 5.09161 5.13367 5.17445 5.19097 5.21670 5.41059 5.48578 5.50376 5.62238 5.66377 5.79789 5.88315 5.93679 6.00159 6.07076 6.13650 6.18665 6.58358 7.04299 7.59887 7.61834 7.65487 7.77967 8.35362 8.57702 9.23616 10.85417 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.030866 B = 0.001750 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.940081 B =15996.714193 C =16413.977893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.138 3.862 3 H 0.095 0.905 4 N -0.732 5.732 5 C 0.535 3.465 6 O -0.515 6.515 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.136 3.864 18 H 0.100 0.900 19 C -0.168 4.168 20 N -0.707 5.707 21 C 0.613 3.387 22 O -0.523 6.523 23 C -0.047 4.047 24 C 0.037 3.963 25 N -0.290 5.290 26 N -0.142 5.142 27 C 0.102 3.898 28 N -0.249 5.249 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.399 0.601 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.268 0.732 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.408 0.592 40 H 0.210 0.790 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.018 -3.048 29.756 31.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.032 3.968 3 H 0.113 0.887 4 N -0.388 5.388 5 C 0.321 3.679 6 O -0.389 6.389 7 C -0.304 4.304 8 S 0.167 5.833 9 C -0.683 4.683 10 H 0.092 0.908 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.031 3.969 18 H 0.118 0.882 19 C -0.226 4.226 20 N -0.360 5.360 21 C 0.396 3.604 22 O -0.396 6.396 23 C -0.210 4.210 24 C -0.146 4.146 25 N -0.130 5.130 26 N -0.045 5.045 27 C -0.037 4.037 28 N -0.098 5.098 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.235 0.765 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.245 0.755 40 H 0.226 0.774 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.806 -0.633 30.010 31.578 hybrid contribution 1.063 -2.692 -1.035 3.074 sum -8.743 -3.325 28.974 30.447 Atomic orbital electron populations 1.22274 0.95164 1.02577 1.02694 1.20958 0.94491 0.97790 0.83577 0.88687 1.46075 1.69619 1.14024 1.09091 1.20327 0.76695 0.87210 0.83679 1.90704 1.48099 1.15721 1.84357 1.23537 1.03767 1.04893 0.98250 1.85395 1.86350 1.12878 0.98721 1.22913 1.50915 0.98198 0.96302 0.90841 1.24994 0.95091 0.95538 0.97974 1.70025 1.45622 1.13217 1.21430 0.86116 0.78522 0.80148 0.80705 1.19604 1.20585 1.20563 1.21195 0.99772 0.92753 0.83200 0.88229 1.22259 1.02385 0.95116 1.02884 1.45899 1.26136 1.56555 1.07423 1.16581 0.83644 0.79070 0.81136 1.90839 1.21492 1.42467 1.84846 1.23037 0.94747 1.06087 0.97143 1.24884 1.00878 0.99690 0.89183 1.74054 0.98889 1.15039 1.25028 1.48062 1.17435 1.36899 1.02072 1.22304 0.83721 0.95249 1.02453 1.74361 1.18248 1.12740 1.04490 0.91793 0.92147 0.90963 0.76530 0.89109 0.89144 0.92239 0.91601 0.91155 0.91491 0.75463 0.77384 0.88617 0.87425 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.00 37.16 0.33 -1.31 16 2 C 0.14 1.52 2.62 -67.93 -0.18 1.34 16 3 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 4 N -0.73 -9.19 4.99 -53.80 -0.27 -9.46 16 5 C 0.53 9.58 7.81 -10.99 -0.09 9.49 16 6 O -0.52 -11.25 15.53 5.55 0.09 -11.17 16 7 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 8 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 9 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 10 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 13 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 14 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 C 0.14 1.28 2.62 -67.93 -0.18 1.10 16 18 H 0.10 1.08 7.58 -51.93 -0.39 0.69 16 19 C -0.17 -1.35 9.00 37.16 0.33 -1.01 16 20 N -0.71 -6.37 4.99 -54.76 -0.27 -6.65 16 21 C 0.61 6.53 7.79 -12.35 -0.10 6.44 16 22 O -0.52 -6.91 16.61 5.32 0.09 -6.82 16 23 C -0.05 -0.46 7.21 -82.68 -0.60 -1.06 16 24 C 0.04 0.33 12.04 -16.83 -0.20 0.12 16 25 N -0.29 -2.52 12.01 30.90 0.37 -2.15 16 26 N -0.14 -1.05 4.34 -16.63 -0.07 -1.12 16 27 C 0.10 0.23 11.55 59.85 0.69 0.92 16 28 N -0.25 -2.19 11.84 33.42 0.40 -1.80 16 29 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 30 H 0.06 0.46 6.29 -51.93 -0.33 0.14 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.40 3.94 6.58 -40.82 -0.27 3.67 16 33 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 34 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 35 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16 37 H 0.07 0.50 6.29 -51.93 -0.33 0.17 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.41 3.17 6.35 -40.82 -0.26 2.92 16 40 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.10 0.10 8.14 -51.93 -0.42 -0.33 16 42 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.11 0.07 8.14 -51.93 -0.42 -0.36 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -37.60 380.72 -5.57 -43.17 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.58 Total: 2.73 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 0.44 Total: 0.36 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.89 Total: -46.52 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.17 Total: -17.99 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.60 -5.57 -43.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571754682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.045 kcal (2) G-P(sol) polarization free energy of solvation -37.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds