Wall clock time and date at job start Sat Apr 11 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47244 * 2 1 4 4 N 1.46505 * 109.47266 * 239.99819 * 2 1 3 5 5 C 1.34772 * 119.99791 * 85.00214 * 4 2 1 6 6 O 1.21285 * 120.00104 * 359.97438 * 5 4 2 7 7 C 1.50698 * 119.99764 * 180.02562 * 5 4 2 8 8 S 1.81001 * 109.46962 * 179.97438 * 7 5 4 9 9 C 1.76201 * 99.99955 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00116 * 359.97438 * 9 8 7 11 11 C 1.38803 * 119.99812 * 179.97438 * 9 8 7 12 12 N 1.31625 * 120.00242 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99811 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46842 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46767 * 119.99826 * 13 11 9 16 16 H 1.48496 * 109.47215 * 239.99816 * 13 11 9 17 17 C 1.53003 * 109.47011 * 119.99884 * 2 1 3 18 18 H 1.09000 * 109.47008 * 185.00222 * 17 2 1 19 19 C 1.53001 * 109.47090 * 65.00173 * 17 2 1 20 20 N 1.46500 * 109.47319 * 304.99915 * 17 2 1 21 21 C 1.34770 * 120.00087 * 205.00048 * 20 17 2 22 22 O 1.21555 * 120.00311 * 0.02562 * 21 20 17 23 23 C 1.47807 * 119.99660 * 180.02562 * 21 20 17 24 24 C 1.40925 * 127.23189 * 179.97438 * 23 21 20 25 25 N 1.31138 * 105.77323 * 179.70542 * 24 23 21 26 26 N 1.28513 * 109.05737 * 0.26446 * 25 24 23 27 27 C 1.46505 * 124.44484 * 179.97438 * 26 25 24 28 28 N 1.28588 * 111.11631 * 0.02562 * 26 25 24 29 29 H 1.09003 * 109.47244 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47437 * 299.99919 * 1 2 3 31 31 H 1.08994 * 109.47238 * 60.00301 * 1 2 3 32 32 H 0.97000 * 119.99493 * 264.99948 * 4 2 1 33 33 H 1.09000 * 109.47117 * 299.99421 * 7 5 4 34 34 H 1.09002 * 109.47254 * 60.00442 * 7 5 4 35 35 H 0.97003 * 120.00227 * 179.97438 * 12 11 9 36 36 H 1.09000 * 109.47235 * 299.99911 * 19 17 2 37 37 H 1.09001 * 109.47362 * 59.99966 * 19 17 2 38 38 H 1.08998 * 109.47287 * 180.02562 * 19 17 2 39 39 H 0.96999 * 119.99685 * 25.00075 * 20 17 2 40 40 H 1.08002 * 127.11735 * 359.97436 * 24 23 21 41 41 H 1.09000 * 109.47112 * 90.02086 * 27 26 25 42 42 H 1.08999 * 109.47349 * 210.02744 * 27 26 25 43 43 H 1.09003 * 109.46998 * 330.02797 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6489 -0.7289 -3.5876 8 16 2.7093 0.4340 -4.9733 9 6 3.3112 -0.6316 -6.2410 10 1 3.5207 -1.6679 -6.0210 11 6 3.5160 -0.1390 -7.5224 12 7 3.2612 1.1242 -7.7905 13 14 4.1548 -1.2685 -8.8662 14 1 4.3613 -2.6304 -8.3113 15 1 3.1662 -1.3299 -9.9726 16 1 5.4441 -0.7433 -9.3830 17 6 2.0400 -0.7212 1.2493 18 1 3.1263 -0.6443 1.2952 19 6 1.6352 -2.1955 1.1880 20 7 1.4558 -0.1036 2.4424 21 6 2.0912 -0.1937 3.6275 22 8 3.1492 -0.7871 3.7064 23 6 1.5015 0.4289 4.8314 24 6 2.0303 0.4282 6.1377 25 7 1.1750 1.1017 6.8688 26 7 0.2012 1.4894 6.1252 27 6 -0.9444 2.2695 6.6000 28 7 0.3636 1.1018 4.9099 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 3.6481 -1.1214 -3.3985 34 1 1.9760 -1.5506 -3.8325 35 1 3.4047 1.4686 -8.6859 36 1 0.5489 -2.2724 1.1421 37 1 2.0698 -2.6550 0.3003 38 1 1.9981 -2.7092 2.0782 39 1 0.6118 0.3702 2.3794 40 1 2.9517 -0.0285 6.4675 41 1 -0.7228 3.3328 6.5085 42 1 -1.8220 2.0282 6.0003 43 1 -1.1406 2.0279 7.6447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571754682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:08 Heat of formation + Delta-G solvation = 9.901765 kcal Electronic energy + Delta-G solvation = -26239.726018 eV Core-core repulsion = 22255.146655 eV Total energy + Delta-G solvation = -3984.579364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.73046 -41.31880 -40.43847 -38.05120 -35.23829 -34.79054 -34.57195 -33.83554 -32.40640 -30.73475 -29.76901 -28.90079 -27.64998 -26.12212 -24.98008 -23.15619 -22.42828 -21.53453 -20.94678 -19.93165 -19.13093 -18.10499 -18.05505 -17.94751 -17.15792 -16.90381 -16.85922 -16.41497 -16.10858 -15.81560 -15.70746 -15.48791 -15.29992 -14.73701 -14.47545 -14.17771 -13.91611 -13.66010 -13.64370 -13.37699 -13.23019 -13.14442 -13.05038 -12.90621 -12.81168 -12.57235 -12.16518 -12.11597 -11.95531 -11.69643 -11.57810 -11.42867 -11.14831 -10.95282 -10.55485 -10.25736 -10.23880 -10.17824 -8.64727 -8.33836 -6.11206 0.15677 0.85012 1.20114 1.28467 1.42186 1.46861 1.57681 1.61720 1.86037 2.09884 2.27920 2.39866 2.84507 3.00588 3.33062 3.44558 3.70928 3.80499 3.96340 3.97417 4.09642 4.28951 4.31226 4.32463 4.36712 4.45673 4.48153 4.54026 4.66892 4.69049 4.69267 4.89450 4.93334 4.94609 5.15776 5.27989 5.40479 5.43726 5.46114 5.50000 6.21335 6.28285 6.48370 6.93548 7.04849 7.07969 7.24038 8.75541 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.030866 B = 0.001750 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.940081 B =15996.714193 C =16413.977893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.072 0.928 4 N -0.706 5.706 5 C 0.538 3.462 6 O -0.561 6.561 7 C -0.131 4.131 8 S -0.150 6.150 9 C -0.545 4.545 10 H 0.083 0.917 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.998 3.002 14 H -0.256 1.256 15 H -0.274 1.274 16 H -0.275 1.275 17 C 0.145 3.855 18 H 0.086 0.914 19 C -0.165 4.165 20 N -0.698 5.698 21 C 0.615 3.385 22 O -0.554 6.554 23 C -0.068 4.068 24 C 0.030 3.970 25 N -0.300 5.300 26 N -0.134 5.134 27 C 0.087 3.913 28 N -0.251 5.251 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.416 0.584 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.271 0.729 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.415 0.585 40 H 0.223 0.777 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.734 -5.007 30.913 32.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.090 0.910 4 N -0.362 5.362 5 C 0.324 3.676 6 O -0.438 6.438 7 C -0.282 4.282 8 S 0.077 5.923 9 C -0.693 4.693 10 H 0.101 0.899 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.180 1.180 15 H -0.199 1.199 16 H -0.201 1.201 17 C 0.040 3.960 18 H 0.104 0.896 19 C -0.223 4.223 20 N -0.351 5.351 21 C 0.399 3.601 22 O -0.430 6.430 23 C -0.229 4.229 24 C -0.153 4.153 25 N -0.141 5.141 26 N -0.038 5.038 27 C -0.051 4.051 28 N -0.102 5.102 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.255 0.745 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.254 0.746 40 H 0.239 0.761 41 H 0.129 0.871 42 H 0.143 0.857 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.543 -2.629 31.210 33.048 hybrid contribution 1.195 -2.035 -1.207 2.651 sum -9.348 -4.664 30.003 31.770 Atomic orbital electron populations 1.22229 0.93660 1.03768 1.02519 1.21003 0.95544 0.96657 0.83312 0.90988 1.45788 1.67856 1.14618 1.07952 1.20031 0.76529 0.86544 0.84502 1.90697 1.50416 1.17629 1.85106 1.23385 1.05641 1.03283 0.95904 1.85568 1.86729 1.17298 1.02726 1.23250 1.50775 0.98512 0.96774 0.89852 1.26116 0.95106 0.97178 1.00763 1.70186 1.46957 1.15464 1.22199 0.84913 0.77794 0.78267 0.77021 1.18001 1.19948 1.20051 1.21045 0.98936 0.93653 0.82403 0.89634 1.22249 1.03315 0.93476 1.03234 1.45811 1.26149 1.56254 1.06898 1.16690 0.83218 0.78612 0.81625 1.90817 1.22811 1.43973 1.85374 1.22912 0.95581 1.07358 0.97098 1.25182 1.01475 0.99684 0.88956 1.74055 0.99341 1.15382 1.25300 1.48628 1.17766 1.35929 1.01525 1.22816 0.82812 0.95605 1.03830 1.74319 1.17889 1.12677 1.05285 0.89863 0.89878 0.93648 0.74500 0.87205 0.86942 0.92032 0.90273 0.89879 0.92073 0.74620 0.76085 0.87091 0.85671 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.00 71.98 0.65 -2.27 16 2 C 0.14 2.94 2.62 44.99 0.12 3.06 16 3 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 4 N -0.71 -16.64 4.99 -442.52 -2.21 -18.85 16 5 C 0.54 19.04 7.81 87.66 0.68 19.72 16 6 O -0.56 -25.10 15.53 -3.05 -0.05 -25.15 16 7 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 8 S -0.15 -8.26 20.57 -56.49 -1.16 -9.42 16 9 C -0.55 -30.92 9.50 67.96 0.65 -30.27 16 10 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 11 C 0.01 0.74 5.49 84.86 0.47 1.21 16 12 N -0.91 -55.87 13.22 21.65 0.29 -55.58 16 13 Si 1.00 43.49 29.55 68.60 2.03 45.51 16 14 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 16 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 17 C 0.14 2.53 2.62 44.99 0.12 2.65 16 18 H 0.09 1.80 7.58 -2.39 -0.02 1.78 16 19 C -0.16 -2.23 9.00 71.98 0.65 -1.59 16 20 N -0.70 -11.80 4.99 -445.45 -2.22 -14.02 16 21 C 0.61 12.77 7.79 86.78 0.68 13.45 16 22 O -0.55 -14.57 16.61 -3.89 -0.06 -14.63 16 23 C -0.07 -1.28 7.21 42.24 0.30 -0.98 16 24 C 0.03 0.50 12.04 85.46 1.03 1.53 16 25 N -0.30 -4.86 12.01 -56.16 -0.67 -5.53 16 26 N -0.13 -1.76 4.34 -206.53 -0.90 -2.66 16 27 C 0.09 0.20 11.55 127.77 1.48 1.68 16 28 N -0.25 -4.09 11.84 -48.16 -0.57 -4.66 16 29 H 0.08 1.18 6.57 -2.39 -0.02 1.16 16 30 H 0.08 1.10 6.29 -2.39 -0.02 1.09 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.42 7.06 6.58 -92.71 -0.61 6.45 16 33 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 34 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 35 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.08 0.89 6.57 -2.39 -0.02 0.87 16 37 H 0.08 0.91 6.29 -2.39 -0.02 0.89 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.41 5.80 6.35 -92.71 -0.59 5.22 16 40 H 0.22 2.81 8.06 -2.91 -0.02 2.78 16 41 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 42 H 0.12 -0.14 8.14 -2.39 -0.02 -0.15 16 43 H 0.13 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: -1.00 -84.21 380.72 1.59 -82.61 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -0.13 Total: 18.79 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 7.25 Total: 3.58 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -6.28 Total: -101.31 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.11 Total: -39.78 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.16 Total: -9.42 kcal Total: -84.21 1.59 -82.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571754682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.515 kcal (2) G-P(sol) polarization free energy of solvation -84.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds