Wall clock time and date at job start Sat Apr 11 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21274 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99541 * 179.97438 * 5 4 2 8 8 S 1.80998 * 109.46775 * 179.97438 * 7 5 4 9 9 C 1.76203 * 99.99774 * 179.97438 * 8 7 5 10 10 H 1.07994 * 120.00146 * 0.02562 * 9 8 7 11 11 C 1.38800 * 119.99753 * 179.97438 * 9 8 7 12 12 N 1.31629 * 120.00322 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99691 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46887 * 90.00623 * 13 11 9 15 15 H 1.48500 * 109.46863 * 210.00215 * 13 11 9 16 16 H 1.48492 * 109.47112 * 330.00607 * 13 11 9 17 17 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 18 18 H 1.08997 * 109.47756 * 174.99755 * 17 2 1 19 19 C 1.53005 * 109.47264 * 295.00560 * 17 2 1 20 20 N 1.46504 * 109.46795 * 55.00087 * 17 2 1 21 21 C 1.34780 * 120.00174 * 155.00104 * 20 17 2 22 22 O 1.21565 * 119.99877 * 0.02562 * 21 20 17 23 23 C 1.47798 * 120.00406 * 180.02562 * 21 20 17 24 24 C 1.40921 * 127.23870 * 180.02562 * 23 21 20 25 25 N 1.31136 * 105.77612 * 180.02562 * 24 23 21 26 26 N 1.28520 * 109.05574 * 359.97438 * 25 24 23 27 27 C 1.46503 * 124.43986 * 179.97438 * 26 25 24 28 28 N 1.28584 * 111.11700 * 359.72267 * 26 25 24 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 1.09002 * 109.46644 * 299.99282 * 7 5 4 34 34 H 1.08999 * 109.46969 * 59.99809 * 7 5 4 35 35 H 0.97001 * 120.00140 * 179.97438 * 12 11 9 36 36 H 1.08997 * 109.46584 * 299.99168 * 19 17 2 37 37 H 1.08999 * 109.47123 * 59.99430 * 19 17 2 38 38 H 1.09001 * 109.46897 * 179.97438 * 19 17 2 39 39 H 0.97000 * 120.00109 * 335.00248 * 20 17 2 40 40 H 1.08001 * 127.11016 * 0.02562 * 24 23 21 41 41 H 1.09000 * 109.47231 * 90.02686 * 27 26 25 42 42 H 1.08994 * 109.47100 * 210.02608 * 27 26 25 43 43 H 1.09003 * 109.47072 * 330.02409 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7288 3.5878 8 16 2.7106 0.4345 4.9730 9 6 3.3123 -0.6312 6.2408 10 1 3.5210 -1.6677 6.0210 11 6 3.5190 -0.1381 7.5217 12 7 3.2651 1.1254 7.7895 13 14 4.1562 -1.2680 8.8659 14 1 5.6406 -1.2316 8.8806 15 1 3.6369 -0.8145 10.1811 16 1 3.6976 -2.6560 8.6044 17 6 2.0400 -0.7213 -1.2492 18 1 3.1263 -0.6444 -1.2952 19 6 1.6352 -2.1955 -1.1879 20 7 1.4559 -0.1037 -2.4423 21 6 2.0912 -0.1938 -3.6276 22 8 3.1488 -0.7880 -3.7066 23 6 1.5022 0.4297 -4.8312 24 6 2.0310 0.4291 -6.1374 25 7 1.1735 1.0986 -6.8695 26 7 0.2007 1.4881 -6.1255 27 6 -0.9463 2.2657 -6.6009 28 7 0.3634 1.1013 -4.9100 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 1.9759 -1.5506 3.8326 34 1 3.6480 -1.1214 3.3986 35 1 3.4092 1.4699 8.6848 36 1 2.0698 -2.6550 -0.3002 37 1 0.5489 -2.2724 -1.1420 38 1 1.9982 -2.7093 -2.0781 39 1 0.6118 0.3701 -2.3794 40 1 2.9522 -0.0282 -6.4673 41 1 -1.7364 1.5877 -6.9234 42 1 -1.3167 2.8975 -5.7937 43 1 -0.6390 2.8907 -7.4395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571754683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:11 Heat of formation + Delta-G solvation = 39.906256 kcal Electronic energy + Delta-G solvation = -26238.292437 eV Core-core repulsion = 22255.014165 eV Total energy + Delta-G solvation = -3983.278271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.11838 -40.34855 -39.24457 -36.99183 -34.35671 -34.12189 -33.12688 -32.42818 -31.29622 -29.83689 -28.53730 -28.41239 -25.51516 -25.36906 -24.17721 -22.58336 -21.42823 -20.51482 -19.95911 -18.53419 -17.84144 -17.48593 -17.44927 -16.57852 -16.16384 -15.87432 -15.27061 -15.13903 -14.98960 -14.80154 -14.61599 -14.43598 -13.96070 -13.67651 -13.50447 -13.31100 -13.17471 -12.85164 -12.56827 -12.45662 -12.39457 -12.03362 -11.91543 -11.51244 -11.24805 -11.08538 -11.05711 -11.02306 -10.92621 -10.76242 -10.57375 -9.93680 -9.81958 -9.49707 -9.40846 -9.07469 -8.98028 -8.24108 -6.50119 -6.21717 -3.92265 0.84363 1.49993 1.65399 2.55497 2.87457 3.05475 3.09201 3.22749 3.28588 3.32784 3.44992 3.72583 4.20446 4.24530 4.36579 4.40573 4.48857 4.63693 4.66777 4.69787 4.89755 5.09179 5.13552 5.17469 5.19070 5.21688 5.41081 5.48602 5.50387 5.62287 5.66406 5.79811 5.88351 5.93672 6.00138 6.07093 6.13681 6.18649 6.58395 7.04283 7.59699 7.61802 7.65498 7.77951 8.35294 8.57731 9.23761 10.85673 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.030870 B = 0.001750 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.797754 B =15997.266364 C =16413.924667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.138 3.862 3 H 0.095 0.905 4 N -0.732 5.732 5 C 0.535 3.465 6 O -0.515 6.515 7 C -0.154 4.154 8 S -0.060 6.060 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.136 3.864 18 H 0.100 0.900 19 C -0.168 4.168 20 N -0.707 5.707 21 C 0.613 3.387 22 O -0.523 6.523 23 C -0.047 4.047 24 C 0.037 3.963 25 N -0.290 5.290 26 N -0.142 5.142 27 C 0.102 3.898 28 N -0.249 5.249 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.268 0.732 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.408 0.592 40 H 0.210 0.790 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.968 -2.940 -29.721 31.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.032 3.968 3 H 0.113 0.887 4 N -0.388 5.388 5 C 0.321 3.679 6 O -0.389 6.389 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.684 4.684 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C 0.031 3.969 18 H 0.118 0.882 19 C -0.226 4.226 20 N -0.360 5.360 21 C 0.396 3.604 22 O -0.396 6.396 23 C -0.210 4.210 24 C -0.146 4.146 25 N -0.130 5.130 26 N -0.045 5.045 27 C -0.037 4.037 28 N -0.098 5.098 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.235 0.765 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.245 0.755 40 H 0.226 0.774 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.762 -0.525 -29.972 31.526 hybrid contribution 1.053 -2.731 1.022 3.101 sum -8.709 -3.257 -28.950 30.407 Atomic orbital electron populations 1.22276 0.95165 1.02578 1.02693 1.20957 0.94490 0.97791 0.83576 0.88686 1.46077 1.69625 1.14026 1.09088 1.20327 0.76690 0.87211 0.83680 1.90701 1.48108 1.15709 1.84356 1.23539 1.03762 1.04897 0.98256 1.85392 1.86352 1.12822 0.98739 1.22870 1.51020 0.98143 0.96356 0.90898 1.24991 0.95081 0.95543 0.97960 1.70016 1.45500 1.13222 1.21558 0.86168 0.79017 0.80191 0.80126 1.20264 1.20765 1.19697 1.21196 0.99770 0.92752 0.83198 0.88227 1.22260 1.02384 0.95119 1.02884 1.45902 1.26138 1.56556 1.07419 1.16585 0.83639 0.79078 0.81135 1.90842 1.21520 1.42446 1.84842 1.23034 0.94630 1.06184 0.97163 1.24882 1.00805 0.99797 0.89144 1.74057 0.98839 1.15144 1.24971 1.48062 1.17410 1.36970 1.02026 1.22303 0.83435 0.95480 1.02509 1.74363 1.18133 1.12827 1.04512 0.92146 0.90962 0.91793 0.76531 0.89146 0.89113 0.92188 0.91156 0.91601 0.91492 0.75463 0.77383 0.88701 0.87386 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 9.00 37.16 0.33 -1.31 16 2 C 0.14 1.52 2.62 -67.93 -0.18 1.34 16 3 H 0.10 1.25 7.58 -51.93 -0.39 0.86 16 4 N -0.73 -9.19 4.99 -53.80 -0.27 -9.46 16 5 C 0.53 9.58 7.81 -10.98 -0.09 9.49 16 6 O -0.52 -11.25 15.52 5.56 0.09 -11.16 16 7 C -0.15 -3.03 6.16 36.01 0.22 -2.81 16 8 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 9 C -0.54 -15.17 9.50 30.94 0.29 -14.87 16 10 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 11 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 13 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 C 0.14 1.28 2.62 -67.93 -0.18 1.10 16 18 H 0.10 1.08 7.58 -51.93 -0.39 0.69 16 19 C -0.17 -1.35 9.00 37.16 0.33 -1.02 16 20 N -0.71 -6.37 4.99 -54.76 -0.27 -6.65 16 21 C 0.61 6.53 7.79 -12.35 -0.10 6.44 16 22 O -0.52 -6.91 16.62 5.31 0.09 -6.82 16 23 C -0.05 -0.46 7.21 -82.68 -0.60 -1.06 16 24 C 0.04 0.33 12.04 -16.83 -0.20 0.12 16 25 N -0.29 -2.52 12.01 30.90 0.37 -2.15 16 26 N -0.14 -1.05 4.34 -16.63 -0.07 -1.12 16 27 C 0.10 0.23 11.55 59.85 0.69 0.92 16 28 N -0.25 -2.19 11.84 33.42 0.40 -1.80 16 29 H 0.06 0.46 6.29 -51.93 -0.33 0.14 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 32 H 0.40 3.94 6.58 -40.82 -0.27 3.67 16 33 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 34 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.07 0.50 6.29 -51.93 -0.33 0.17 16 37 H 0.07 0.48 6.57 -51.93 -0.34 0.14 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.41 3.17 6.35 -40.82 -0.26 2.92 16 40 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.11 0.10 8.14 -51.93 -0.42 -0.33 16 43 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -37.56 380.72 -5.57 -43.13 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.58 Total: 2.77 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 0.44 Total: 0.35 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.89 Total: -46.51 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.17 Total: -17.98 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.56 -5.57 -43.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571754683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.040 kcal (2) G-P(sol) polarization free energy of solvation -37.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds