Wall clock time and date at job start Sat Apr 11 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21274 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99541 * 179.97438 * 5 4 2 8 8 S 1.80998 * 109.46775 * 179.97438 * 7 5 4 9 9 C 1.76203 * 99.99774 * 179.97438 * 8 7 5 10 10 H 1.07994 * 120.00146 * 0.02562 * 9 8 7 11 11 C 1.38800 * 119.99753 * 179.97438 * 9 8 7 12 12 N 1.31629 * 120.00322 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99691 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46887 * 90.00623 * 13 11 9 15 15 H 1.48500 * 109.46863 * 210.00215 * 13 11 9 16 16 H 1.48492 * 109.47112 * 330.00607 * 13 11 9 17 17 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 18 18 H 1.08997 * 109.47756 * 174.99755 * 17 2 1 19 19 C 1.53005 * 109.47264 * 295.00560 * 17 2 1 20 20 N 1.46504 * 109.46795 * 55.00087 * 17 2 1 21 21 C 1.34780 * 120.00174 * 155.00104 * 20 17 2 22 22 O 1.21565 * 119.99877 * 0.02562 * 21 20 17 23 23 C 1.47798 * 120.00406 * 180.02562 * 21 20 17 24 24 C 1.40921 * 127.23870 * 180.02562 * 23 21 20 25 25 N 1.31136 * 105.77612 * 180.02562 * 24 23 21 26 26 N 1.28520 * 109.05574 * 359.97438 * 25 24 23 27 27 C 1.46503 * 124.43986 * 179.97438 * 26 25 24 28 28 N 1.28584 * 111.11700 * 359.72267 * 26 25 24 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 1.09002 * 109.46644 * 299.99282 * 7 5 4 34 34 H 1.08999 * 109.46969 * 59.99809 * 7 5 4 35 35 H 0.97001 * 120.00140 * 179.97438 * 12 11 9 36 36 H 1.08997 * 109.46584 * 299.99168 * 19 17 2 37 37 H 1.08999 * 109.47123 * 59.99430 * 19 17 2 38 38 H 1.09001 * 109.46897 * 179.97438 * 19 17 2 39 39 H 0.97000 * 120.00109 * 335.00248 * 20 17 2 40 40 H 1.08001 * 127.11016 * 0.02562 * 24 23 21 41 41 H 1.09000 * 109.47231 * 90.02686 * 27 26 25 42 42 H 1.08994 * 109.47100 * 210.02608 * 27 26 25 43 43 H 1.09003 * 109.47072 * 330.02409 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7288 3.5878 8 16 2.7106 0.4345 4.9730 9 6 3.3123 -0.6312 6.2408 10 1 3.5210 -1.6677 6.0210 11 6 3.5190 -0.1381 7.5217 12 7 3.2651 1.1254 7.7895 13 14 4.1562 -1.2680 8.8659 14 1 5.6406 -1.2316 8.8806 15 1 3.6369 -0.8145 10.1811 16 1 3.6976 -2.6560 8.6044 17 6 2.0400 -0.7213 -1.2492 18 1 3.1263 -0.6444 -1.2952 19 6 1.6352 -2.1955 -1.1879 20 7 1.4559 -0.1037 -2.4423 21 6 2.0912 -0.1938 -3.6276 22 8 3.1488 -0.7880 -3.7066 23 6 1.5022 0.4297 -4.8312 24 6 2.0310 0.4291 -6.1374 25 7 1.1735 1.0986 -6.8695 26 7 0.2007 1.4881 -6.1255 27 6 -0.9463 2.2657 -6.6009 28 7 0.3634 1.1013 -4.9100 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 1.9759 -1.5506 3.8326 34 1 3.6480 -1.1214 3.3986 35 1 3.4092 1.4699 8.6848 36 1 2.0698 -2.6550 -0.3002 37 1 0.5489 -2.2724 -1.1420 38 1 1.9982 -2.7093 -2.0781 39 1 0.6118 0.3701 -2.3794 40 1 2.9522 -0.0282 -6.4673 41 1 -1.7364 1.5877 -6.9234 42 1 -1.3167 2.8975 -5.7937 43 1 -0.6390 2.8907 -7.4395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571754683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:11 Heat of formation + Delta-G solvation = 9.972936 kcal Electronic energy + Delta-G solvation = -26239.590443 eV Core-core repulsion = 22255.014165 eV Total energy + Delta-G solvation = -3984.576278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.73007 -41.31803 -40.43776 -38.05116 -35.23735 -34.79079 -34.56925 -33.83535 -32.40545 -30.73449 -29.76838 -28.90122 -27.64607 -26.12219 -24.98018 -23.15601 -22.42774 -21.53405 -20.94650 -19.92929 -19.13036 -18.10447 -18.05406 -17.94730 -17.15794 -16.90161 -16.85692 -16.41495 -16.10561 -15.81396 -15.70908 -15.48818 -15.29845 -14.73657 -14.47229 -14.17877 -13.91773 -13.66026 -13.64156 -13.37661 -13.22961 -13.14933 -13.05206 -12.88215 -12.81148 -12.58499 -12.16515 -12.11629 -11.95689 -11.71320 -11.57786 -11.42855 -11.13074 -10.95216 -10.55427 -10.26015 -10.23873 -10.17790 -8.64604 -8.33451 -6.10975 0.15622 0.84996 1.20133 1.28440 1.43402 1.46905 1.56934 1.61767 1.86062 2.09837 2.28289 2.39909 2.84454 3.00831 3.33193 3.44587 3.70921 3.80513 3.96348 3.97438 4.09623 4.28983 4.31293 4.32508 4.36693 4.45660 4.48075 4.54076 4.66933 4.69028 4.69251 4.89438 4.93303 4.94614 5.15709 5.27990 5.40417 5.43558 5.46154 5.49982 6.21267 6.28263 6.48406 6.93530 7.04824 7.08154 7.24094 8.75642 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.030870 B = 0.001750 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.797754 B =15997.266364 C =16413.924667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.140 3.860 3 H 0.072 0.928 4 N -0.706 5.706 5 C 0.538 3.462 6 O -0.561 6.561 7 C -0.131 4.131 8 S -0.150 6.150 9 C -0.546 4.546 10 H 0.083 0.917 11 C 0.013 3.987 12 N -0.911 5.911 13 Si 0.998 3.002 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.258 1.258 17 C 0.145 3.855 18 H 0.086 0.914 19 C -0.165 4.165 20 N -0.698 5.698 21 C 0.614 3.386 22 O -0.554 6.554 23 C -0.068 4.068 24 C 0.030 3.970 25 N -0.300 5.300 26 N -0.134 5.134 27 C 0.087 3.913 28 N -0.251 5.251 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.416 0.584 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.271 0.729 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.415 0.585 40 H 0.223 0.777 41 H 0.114 0.886 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 -4.906 -30.881 32.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.090 0.910 4 N -0.362 5.362 5 C 0.324 3.676 6 O -0.438 6.438 7 C -0.282 4.282 8 S 0.077 5.923 9 C -0.694 4.694 10 H 0.101 0.899 11 C -0.191 4.191 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.181 1.181 17 C 0.040 3.960 18 H 0.104 0.896 19 C -0.223 4.223 20 N -0.351 5.351 21 C 0.399 3.601 22 O -0.430 6.430 23 C -0.230 4.230 24 C -0.153 4.153 25 N -0.141 5.141 26 N -0.038 5.038 27 C -0.051 4.051 28 N -0.102 5.102 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.255 0.745 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.254 0.746 40 H 0.239 0.761 41 H 0.132 0.868 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.502 -2.529 -31.175 32.994 hybrid contribution 1.185 -2.076 1.192 2.671 sum -9.317 -4.605 -29.983 31.734 Atomic orbital electron populations 1.22231 0.93665 1.03763 1.02520 1.21001 0.95538 0.96662 0.83308 0.90977 1.45790 1.67863 1.14619 1.07950 1.20030 0.76526 0.86546 0.84502 1.90694 1.50422 1.17614 1.85103 1.23387 1.05639 1.03283 0.95911 1.85565 1.86733 1.17250 1.02747 1.23217 1.50868 0.98489 0.96823 0.89856 1.26115 0.95091 0.97184 1.00755 1.70181 1.46854 1.15467 1.22276 0.84964 0.78460 0.78259 0.76365 1.19422 1.20349 1.18150 1.21046 0.98937 0.93647 0.82404 0.89627 1.22250 1.03307 0.93487 1.03231 1.45814 1.26151 1.56255 1.06894 1.16694 0.83212 0.78620 0.81624 1.90820 1.22839 1.43952 1.85371 1.22910 0.95463 1.07460 0.97118 1.25179 1.01403 0.99790 0.88917 1.74058 0.99291 1.15491 1.25238 1.48629 1.17749 1.35984 1.01483 1.22815 0.82542 0.96009 1.03696 1.74321 1.17774 1.12766 1.05308 0.89879 0.93643 0.89872 0.74503 0.86952 0.87202 0.92035 0.89878 0.90281 0.92078 0.74621 0.76085 0.86767 0.85868 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.00 71.98 0.65 -2.27 16 2 C 0.14 2.94 2.62 44.99 0.12 3.06 16 3 H 0.07 1.91 7.58 -2.39 -0.02 1.89 16 4 N -0.71 -16.64 4.99 -442.53 -2.21 -18.85 16 5 C 0.54 19.03 7.81 87.66 0.68 19.72 16 6 O -0.56 -25.08 15.52 -3.01 -0.05 -25.13 16 7 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 8 S -0.15 -8.24 20.57 -56.49 -1.16 -9.40 16 9 C -0.55 -30.96 9.50 67.95 0.65 -30.32 16 10 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 11 C 0.01 0.75 5.49 84.86 0.47 1.22 16 12 N -0.91 -55.85 13.22 21.65 0.29 -55.57 16 13 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 14 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 16 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 17 C 0.14 2.53 2.62 44.99 0.12 2.65 16 18 H 0.09 1.80 7.58 -2.39 -0.02 1.78 16 19 C -0.16 -2.24 9.00 71.98 0.65 -1.59 16 20 N -0.70 -11.80 4.99 -445.43 -2.22 -14.02 16 21 C 0.61 12.77 7.79 86.77 0.68 13.45 16 22 O -0.55 -14.57 16.62 -3.92 -0.07 -14.64 16 23 C -0.07 -1.28 7.21 42.24 0.30 -0.98 16 24 C 0.03 0.50 12.04 85.45 1.03 1.53 16 25 N -0.30 -4.86 12.01 -56.16 -0.67 -5.53 16 26 N -0.13 -1.76 4.34 -206.54 -0.90 -2.66 16 27 C 0.09 0.20 11.55 127.77 1.48 1.68 16 28 N -0.25 -4.09 11.84 -48.17 -0.57 -4.66 16 29 H 0.08 1.10 6.29 -2.39 -0.02 1.09 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.18 6.57 -2.38 -0.02 1.16 16 32 H 0.42 7.06 6.58 -92.71 -0.61 6.45 16 33 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 34 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 35 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 36 H 0.08 0.91 6.29 -2.39 -0.02 0.90 16 37 H 0.08 0.89 6.57 -2.39 -0.02 0.87 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.41 5.81 6.35 -92.71 -0.59 5.22 16 40 H 0.22 2.81 8.06 -2.91 -0.02 2.78 16 41 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.12 -0.10 8.14 -2.39 -0.02 -0.12 16 Total: -1.00 -84.13 380.72 1.59 -82.53 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.13 Total: 18.91 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 7.25 Total: 3.55 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -6.28 Total: -101.29 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -0.11 Total: -39.77 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.40 kcal Total: -84.13 1.59 -82.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571754683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.507 kcal (2) G-P(sol) polarization free energy of solvation -84.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds