Wall clock time and date at job start Sat Apr 11 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 S 1.81000 * 109.47389 * 180.02562 * 7 5 4 9 9 C 1.76198 * 99.99715 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00516 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99710 * 179.97438 * 9 8 7 12 12 N 1.31634 * 120.00163 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46850 * 90.00589 * 13 11 9 15 15 H 1.48498 * 109.47329 * 210.00016 * 13 11 9 16 16 H 1.48499 * 109.47220 * 330.01003 * 13 11 9 17 17 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 18 18 H 1.08995 * 109.47266 * 300.00052 * 17 2 1 19 19 C 1.53004 * 109.46947 * 179.97438 * 17 2 1 20 20 N 1.46507 * 109.47137 * 60.00123 * 17 2 1 21 21 C 1.34775 * 119.99880 * 205.00250 * 20 17 2 22 22 O 1.21273 * 120.00415 * 359.97438 * 21 20 17 23 23 C 1.50702 * 119.99789 * 179.97438 * 21 20 17 24 24 N 1.46499 * 109.47215 * 179.97438 * 23 21 20 25 25 C 1.34425 * 126.82430 * 124.99551 * 24 23 21 26 26 N 1.30836 * 108.07910 * 179.97438 * 25 24 23 27 27 C 1.33245 * 109.82478 * 359.97438 * 26 25 24 28 28 N 1.30709 * 108.94901 * 359.75544 * 27 26 25 29 29 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 31 31 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 32 32 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 33 33 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 34 34 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 35 35 H 0.96991 * 119.99795 * 179.97438 * 12 11 9 36 36 H 1.08994 * 109.47427 * 299.99790 * 19 17 2 37 37 H 1.08999 * 109.46966 * 60.00966 * 19 17 2 38 38 H 1.09010 * 109.46876 * 179.97438 * 19 17 2 39 39 H 0.97000 * 119.99602 * 24.99287 * 20 17 2 40 40 H 1.09004 * 109.46965 * 299.99699 * 23 21 20 41 41 H 1.09000 * 109.47154 * 59.99133 * 23 21 20 42 42 H 1.08002 * 125.96345 * 0.02562 * 25 24 23 43 43 H 1.08003 * 125.52622 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8638 1.1599 2.4102 7 6 2.6605 -0.7257 3.5847 8 16 2.7270 0.4388 4.9688 9 6 3.3357 -0.6251 6.2346 10 1 3.5447 -1.6616 6.0147 11 6 3.5475 -0.1307 7.5142 12 7 3.2932 1.1328 7.7821 13 14 4.1921 -1.2586 8.8564 14 1 5.6767 -1.2203 8.8645 15 1 3.6782 -0.8047 10.1736 16 1 3.7342 -2.6474 8.5982 17 6 2.0400 -0.7213 -1.2492 18 1 1.6766 -1.7489 -1.2492 19 6 3.5700 -0.7207 -1.2495 20 7 1.5516 -0.0307 -2.4455 21 6 1.4229 -0.7031 -3.6064 22 8 1.7117 -1.8797 -3.6610 23 6 0.9200 0.0072 -4.8367 24 7 0.8713 -0.9340 -5.9583 25 6 -0.1944 -1.2164 -6.7274 26 7 0.1706 -2.1039 -7.6169 27 6 1.4563 -2.4105 -7.4481 28 7 1.9306 -1.7155 -6.4479 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 2.2491 -1.6318 1.1526 33 1 1.9894 -1.5476 3.8337 34 1 3.6590 -1.1179 3.3911 35 1 3.4409 1.4781 8.6764 36 1 3.9330 0.3070 -1.2498 37 1 3.9337 -1.2344 -0.3596 38 1 3.9334 -1.2350 -2.1393 39 1 1.3209 0.9105 -2.4018 40 1 -0.0794 0.3990 -4.6471 41 1 1.5922 0.8296 -5.0817 42 1 -1.1797 -0.7853 -6.6290 43 1 2.0166 -3.1160 -8.0437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571755510.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:21 Heat of formation + Delta-G solvation = 22.400598 kcal Electronic energy + Delta-G solvation = -26165.072095 eV Core-core repulsion = 22181.034722 eV Total energy + Delta-G solvation = -3984.037374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.45948 -40.48919 -39.38125 -36.99110 -34.49742 -34.22933 -32.46411 -31.61710 -31.45830 -30.37096 -28.71534 -28.19496 -25.52354 -24.27781 -22.90479 -22.38064 -21.43571 -21.09360 -20.30461 -18.28260 -17.92507 -17.74034 -16.76589 -16.32684 -15.99905 -15.87493 -15.41770 -15.17521 -15.02810 -14.83409 -14.47170 -14.28137 -14.08624 -14.01851 -13.67905 -13.38328 -13.24972 -12.77979 -12.58435 -12.52132 -12.27445 -12.09382 -11.91293 -11.63052 -11.09408 -11.06061 -11.01026 -10.79792 -10.76789 -10.41233 -10.16169 -9.98846 -9.85525 -9.67817 -9.49700 -9.11062 -9.02809 -8.29090 -6.54526 -6.25449 -3.96309 1.19313 1.69625 2.01990 2.45074 2.62537 2.98367 3.03689 3.20022 3.25969 3.30153 3.65214 3.86204 3.91951 4.04066 4.16955 4.22929 4.34915 4.46464 4.63033 4.81898 4.84357 5.03663 5.10026 5.17137 5.22009 5.38221 5.41979 5.57704 5.58072 5.76376 5.78261 5.82799 5.93456 5.97174 6.03081 6.04513 6.09060 6.28698 6.50169 6.88984 7.55767 7.57678 7.62788 7.69196 8.31678 8.49742 9.20220 10.81966 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.038563 B = 0.001652 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.913930 B =16947.062615 C =17292.747936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.094 0.906 4 N -0.731 5.731 5 C 0.537 3.463 6 O -0.516 6.516 7 C -0.154 4.154 8 S -0.059 6.059 9 C -0.536 4.536 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.139 3.861 18 H 0.093 0.907 19 C -0.164 4.164 20 N -0.718 5.718 21 C 0.503 3.497 22 O -0.507 6.507 23 C 0.111 3.889 24 N -0.372 5.372 25 C 0.255 3.745 26 N -0.544 5.544 27 C 0.194 3.806 28 N -0.290 5.290 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.399 0.601 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.269 0.731 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.403 0.597 40 H 0.133 0.867 41 H 0.121 0.879 42 H 0.220 0.780 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 -1.985 -27.961 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 H 0.112 0.888 4 N -0.386 5.386 5 C 0.323 3.677 6 O -0.389 6.389 7 C -0.305 4.305 8 S 0.167 5.833 9 C -0.685 4.685 10 H 0.091 0.909 11 C -0.135 4.135 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C 0.034 3.966 18 H 0.112 0.888 19 C -0.222 4.222 20 N -0.372 5.372 21 C 0.286 3.714 22 O -0.380 6.380 23 C -0.016 4.016 24 N -0.163 5.163 25 C -0.042 4.042 26 N -0.271 5.271 27 C -0.109 4.109 28 N -0.116 5.116 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.234 0.766 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.238 0.762 40 H 0.150 0.850 41 H 0.139 0.861 42 H 0.236 0.764 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.440 -0.877 -27.707 28.459 hybrid contribution 0.562 -1.900 0.993 2.216 sum -5.879 -2.777 -26.714 27.493 Atomic orbital electron populations 1.22195 0.94909 1.02395 1.02669 1.20997 0.94389 0.97800 0.83624 0.88829 1.45945 1.69559 1.13940 1.09178 1.20309 0.76659 0.87164 0.83577 1.90699 1.48287 1.15727 1.84230 1.23541 1.03721 1.04960 0.98273 1.85370 1.86142 1.12794 0.98960 1.22869 1.50900 0.98183 0.96512 0.90897 1.24989 0.95054 0.95543 0.97942 1.70012 1.45433 1.13197 1.21640 0.86168 0.79035 0.80193 0.80115 1.20251 1.20727 1.19689 1.21168 0.94817 0.97521 0.83081 0.88847 1.22177 0.94247 1.02843 1.02962 1.45832 1.67899 1.14214 1.09216 1.20385 0.78942 0.87848 0.84261 1.90824 1.47761 1.15396 1.84017 1.21575 1.05853 0.90786 0.83346 1.49976 1.08318 1.32942 1.25072 1.26106 0.94731 0.94779 0.88541 1.70546 1.13709 1.16674 1.26149 1.26047 0.90470 0.99368 0.95052 1.78207 1.10310 1.09269 1.13837 0.92407 0.91208 0.92022 0.76625 0.89137 0.89133 0.92160 0.92012 0.90956 0.91875 0.76171 0.84957 0.86142 0.76399 0.76681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.33 37.16 0.35 -1.11 16 2 C 0.14 1.31 2.21 -67.93 -0.15 1.16 16 3 H 0.09 1.00 7.57 -51.93 -0.39 0.61 16 4 N -0.73 -8.56 4.38 -53.81 -0.24 -8.79 16 5 C 0.54 9.15 7.82 -10.98 -0.09 9.06 16 6 O -0.52 -10.73 15.52 5.55 0.09 -10.64 16 7 C -0.15 -2.96 6.16 36.01 0.22 -2.73 16 8 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 9 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 10 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 11 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 13 Si 0.92 21.15 29.55 -169.99 -5.02 16.13 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 17 C 0.14 1.11 2.21 -67.93 -0.15 0.96 16 18 H 0.09 0.86 7.58 -51.93 -0.39 0.47 16 19 C -0.16 -1.44 9.33 37.16 0.35 -1.10 16 20 N -0.72 -4.06 4.38 -53.80 -0.24 -4.29 16 21 C 0.50 3.72 7.83 -10.99 -0.09 3.63 16 22 O -0.51 -6.36 15.42 5.56 0.09 -6.28 16 23 C 0.11 0.42 7.03 -5.19 -0.04 0.38 16 24 N -0.37 -2.79 3.40 -63.81 -0.22 -3.00 16 25 C 0.26 1.63 12.63 -90.65 -1.14 0.49 16 26 N -0.54 -5.05 11.19 -15.83 -0.18 -5.22 16 27 C 0.19 1.80 13.03 -91.81 -1.20 0.60 16 28 N -0.29 -3.10 11.84 29.29 0.35 -2.76 16 29 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.39 7.45 -51.93 -0.39 0.00 16 32 H 0.40 3.76 8.39 -40.82 -0.34 3.41 16 33 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 34 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 35 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.65 7.45 -51.93 -0.39 0.26 16 38 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 39 H 0.40 1.12 8.39 -40.82 -0.34 0.78 16 40 H 0.13 -0.09 8.09 -51.93 -0.42 -0.51 16 41 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.22 0.29 8.06 -52.49 -0.42 -0.13 16 43 H 0.22 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -40.68 387.48 -8.76 -49.44 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.01 Total: -0.22 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.74 Total: -1.39 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.21 Total: -49.10 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: 0.17 Total: -16.92 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -40.68 -8.76 -49.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571755510.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.839 kcal (2) G-P(sol) polarization free energy of solvation -40.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds