Wall clock time and date at job start Sat Apr 11 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46793 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99612 * 2 1 3 5 5 N 1.46499 * 109.46840 * 174.99842 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21590 * 120.00297 * 0.02562 * 6 5 4 8 8 C 1.47529 * 120.00024 * 180.02562 * 6 5 4 9 9 C 1.36588 * 125.76995 * 179.71698 * 8 6 5 10 10 N 1.34812 * 106.83999 * 179.90259 * 9 8 6 11 11 C 1.46501 * 126.60003 * 180.11008 * 10 9 8 12 12 N 1.40211 * 106.80849 * 0.35611 * 10 9 8 13 13 N 1.28756 * 108.36832 * 359.77531 * 12 10 9 14 14 N 1.46496 * 109.47348 * 239.99940 * 2 1 3 15 15 C 1.46502 * 119.99746 * 300.00436 * 14 2 1 16 16 C 1.34775 * 120.00119 * 120.00113 * 14 2 1 17 17 O 1.21278 * 120.00293 * 359.97438 * 16 14 2 18 18 C 1.50705 * 119.99839 * 180.02562 * 16 14 2 19 19 S 1.81002 * 109.46951 * 180.02562 * 18 16 14 20 20 C 1.76201 * 99.99676 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00463 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99672 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00258 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00066 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47270 * 90.00166 * 24 22 20 26 26 H 1.48507 * 109.47220 * 210.00190 * 24 22 20 27 27 H 1.48505 * 109.47218 * 329.99892 * 24 22 20 28 28 H 1.09000 * 109.47312 * 300.00425 * 1 2 3 29 29 H 1.09004 * 109.46964 * 60.00223 * 1 2 3 30 30 H 1.08994 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 32 32 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 33 33 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 34 34 H 1.07997 * 126.58300 * 0.03647 * 9 8 6 35 35 H 1.08999 * 109.46918 * 270.27411 * 11 10 9 36 36 H 1.09010 * 109.46979 * 30.26653 * 11 10 9 37 37 H 1.08991 * 109.47496 * 150.26668 * 11 10 9 38 38 H 1.08992 * 109.47467 * 89.99804 * 15 14 2 39 39 H 1.08998 * 109.47217 * 210.00148 * 15 14 2 40 40 H 1.09000 * 109.47078 * 329.99354 * 15 14 2 41 41 H 1.08994 * 109.46670 * 299.99876 * 18 16 14 42 42 H 1.08996 * 109.47004 * 59.99920 * 18 16 14 43 43 H 0.96996 * 120.00101 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1729 -1.4291 2.1908 7 8 3.5682 -1.8860 3.1416 8 6 5.6432 -1.5346 2.1321 9 6 6.4406 -2.1134 3.0780 10 7 7.7107 -2.0005 2.6403 11 6 8.9155 -2.4800 3.3222 12 7 7.6575 -1.3310 1.4095 13 7 6.4250 -1.0720 1.1415 14 7 2.0184 -0.6906 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.7933 -0.0356 -2.0832 17 8 3.0859 1.1256 -1.8916 18 6 3.2952 -0.7460 -3.3140 19 16 4.3015 0.3914 -4.2988 20 6 4.7441 -0.6696 -5.6341 21 1 4.3935 -1.6909 -5.6514 22 6 5.5442 -0.1930 -6.6632 23 7 5.8745 -0.9854 -7.6611 24 14 6.1513 1.5734 -6.6329 25 1 7.4547 1.6368 -5.9241 26 1 6.3205 2.0626 -8.0249 27 1 5.1613 2.4250 -5.9259 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7515 -0.1582 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 3.9824 -0.4622 0.4320 34 1 6.1158 -2.5750 3.9987 35 1 9.2976 -1.6975 3.9778 36 1 8.6713 -3.3624 3.9138 37 1 9.6737 -2.7368 2.5827 38 1 0.7376 -2.1444 -1.9992 39 1 2.4628 -2.5819 -1.9862 40 1 1.5295 -2.5968 -0.4707 41 1 3.9005 -1.6025 -3.0176 42 1 2.4472 -1.0881 -3.9072 43 1 6.4340 -0.6524 -8.3801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571823304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:31 Heat of formation + Delta-G solvation = 32.979241 kcal Electronic energy + Delta-G solvation = -27230.735706 eV Core-core repulsion = 23247.157057 eV Total energy + Delta-G solvation = -3983.578649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.40559 -40.15939 -39.16645 -36.56682 -34.97862 -34.24050 -32.40006 -32.18254 -31.16518 -28.85170 -28.36429 -26.90166 -26.56917 -25.57482 -23.51604 -22.47227 -21.74957 -20.60964 -19.28489 -18.30032 -17.70966 -17.03609 -16.55088 -16.51700 -16.34941 -15.68172 -15.46896 -15.07905 -14.89404 -14.85226 -14.34053 -14.06106 -13.68470 -13.56117 -13.44397 -13.24138 -13.10918 -12.85015 -12.75406 -12.47699 -12.33665 -12.24372 -12.13062 -11.86072 -11.44474 -11.21899 -11.14398 -10.96839 -10.66055 -10.54754 -10.34125 -9.82140 -9.58940 -9.48123 -9.17695 -8.96179 -8.67083 -8.44513 -6.86685 -6.25100 -3.96107 0.88198 1.53586 1.77115 2.68874 2.91019 2.97094 3.13040 3.21655 3.37676 3.54272 3.62590 3.99230 4.04953 4.36971 4.44920 4.45967 4.55494 4.66905 4.72417 4.84830 4.87520 5.01842 5.06532 5.11333 5.14228 5.21820 5.31605 5.40608 5.43319 5.48302 5.58408 5.69783 5.80710 5.87598 5.96444 6.03410 6.05113 6.22280 6.55521 7.28518 7.39822 7.75489 7.97955 8.00905 8.41049 8.45373 9.21418 10.84200 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008803 B = 0.003562 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.866316 B = 7858.119070 C =10304.126986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.123 3.877 3 H 0.110 0.890 4 C 0.111 3.889 5 N -0.708 5.708 6 C 0.608 3.392 7 O -0.546 6.546 8 C -0.106 4.106 9 C 0.092 3.908 10 N -0.366 5.366 11 C 0.087 3.913 12 N -0.056 5.056 13 N -0.195 5.195 14 N -0.618 5.618 15 C 0.077 3.923 16 C 0.532 3.468 17 O -0.516 6.516 18 C -0.121 4.121 19 S -0.140 6.140 20 C -0.520 4.520 21 H 0.087 0.913 22 C 0.096 3.904 23 N -0.881 5.881 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.414 0.586 34 H 0.205 0.795 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.435 -5.295 25.245 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.019 3.981 3 H 0.128 0.872 4 C -0.013 4.013 5 N -0.360 5.360 6 C 0.392 3.608 7 O -0.423 6.423 8 C -0.246 4.246 9 C -0.066 4.066 10 N -0.151 5.151 11 C -0.054 4.054 12 N -0.037 5.037 13 N -0.069 5.069 14 N -0.355 5.355 15 C -0.066 4.066 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.271 4.271 19 S 0.086 5.914 20 C -0.667 4.667 21 H 0.106 0.894 22 C -0.112 4.112 23 N -0.518 5.518 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.251 0.749 34 H 0.221 0.779 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.487 -3.387 24.867 25.220 hybrid contribution -0.087 -1.208 0.052 1.213 sum -2.575 -4.596 24.920 25.471 Atomic orbital electron populations 1.22037 0.93586 1.02747 1.03065 1.21308 0.94965 0.98621 0.83249 0.87184 1.21809 0.79682 1.01633 0.98224 1.45736 1.07787 1.58664 1.23786 1.16712 0.83937 0.77749 0.82357 1.90788 1.68676 1.49315 1.33543 1.21452 0.95943 1.11579 0.95589 1.23322 0.83730 0.98939 1.00571 1.50471 1.07187 1.40230 1.17168 1.22207 0.84266 1.00890 0.98018 1.82143 1.12541 1.13330 0.95698 1.74768 0.97645 1.13339 1.21158 1.47911 1.52149 1.12700 1.22745 1.21780 1.01426 0.81381 1.02022 1.20377 0.77123 0.86817 0.83672 1.90702 1.56284 1.16408 1.75593 1.23308 1.03725 1.03390 0.96705 1.84789 1.63794 1.18611 1.24213 1.22311 1.37330 1.00249 1.06847 0.89449 1.24699 0.94435 0.98082 0.94023 1.69940 1.35729 1.36019 1.10136 0.86746 0.81480 0.85198 0.78500 1.19160 1.20017 1.15902 0.91156 0.91390 0.91959 0.90075 0.90776 0.74910 0.77870 0.89182 0.88411 0.87887 0.92396 0.90510 0.91219 0.88512 0.88530 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.19 37.16 0.34 -0.94 16 2 C 0.12 1.33 2.80 -67.93 -0.19 1.14 16 3 H 0.11 1.42 6.90 -51.92 -0.36 1.06 16 4 C 0.11 1.14 4.92 -4.04 -0.02 1.12 16 5 N -0.71 -8.95 5.38 -61.35 -0.33 -9.28 16 6 C 0.61 8.03 7.82 -12.47 -0.10 7.93 16 7 O -0.55 -7.84 16.86 5.29 0.09 -7.75 16 8 C -0.11 -1.36 6.99 -83.55 -0.58 -1.94 16 9 C 0.09 0.84 11.31 -16.84 -0.19 0.65 16 10 N -0.37 -3.32 4.03 -67.86 -0.27 -3.59 16 11 C 0.09 0.31 11.51 59.85 0.69 1.00 16 12 N -0.06 -0.78 13.78 60.35 0.83 0.05 16 13 N -0.20 -2.96 12.04 32.85 0.40 -2.56 16 14 N -0.62 -7.91 2.24 -173.93 -0.39 -8.30 16 15 C 0.08 0.78 9.30 59.85 0.56 1.33 16 16 C 0.53 9.35 7.40 -10.98 -0.08 9.27 16 17 O -0.52 -10.79 15.19 5.56 0.08 -10.71 16 18 C -0.12 -2.36 4.71 36.01 0.17 -2.19 16 19 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 20 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 23 N -0.88 -26.87 13.97 55.49 0.78 -26.09 16 24 Si 0.86 22.11 27.74 -169.99 -4.71 17.39 16 25 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.71 6.88 -51.93 -0.36 0.35 16 33 H 0.41 5.96 7.56 -40.82 -0.31 5.66 16 34 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.10 0.07 8.14 -51.92 -0.42 -0.35 16 37 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.82 6.44 -51.93 -0.33 0.49 16 40 H 0.07 0.58 6.53 -51.93 -0.34 0.24 16 41 H 0.10 1.80 7.40 -51.92 -0.38 1.42 16 42 H 0.10 1.77 8.11 -51.92 -0.42 1.35 16 43 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -38.25 381.11 -4.84 -43.09 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.86 Total: 2.32 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 0.81 Total: 5.29 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 1.01 Total: -49.78 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.17 Total: -18.46 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.25 -4.84 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571823304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.065 kcal (2) G-P(sol) polarization free energy of solvation -38.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds