Wall clock time and date at job start Sat Apr 11 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46793 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99612 * 2 1 3 5 5 N 1.46499 * 109.46840 * 174.99842 * 4 2 1 6 6 C 1.34779 * 119.99872 * 180.02562 * 5 4 2 7 7 O 1.21590 * 120.00297 * 0.02562 * 6 5 4 8 8 C 1.47529 * 120.00024 * 180.02562 * 6 5 4 9 9 C 1.36588 * 125.76995 * 179.71698 * 8 6 5 10 10 N 1.34812 * 106.83999 * 179.90259 * 9 8 6 11 11 C 1.46501 * 126.60003 * 180.11008 * 10 9 8 12 12 N 1.40211 * 106.80849 * 0.35611 * 10 9 8 13 13 N 1.28756 * 108.36832 * 359.77531 * 12 10 9 14 14 N 1.46496 * 109.47348 * 239.99940 * 2 1 3 15 15 C 1.46502 * 119.99746 * 300.00436 * 14 2 1 16 16 C 1.34775 * 120.00119 * 120.00113 * 14 2 1 17 17 O 1.21278 * 120.00293 * 359.97438 * 16 14 2 18 18 C 1.50705 * 119.99839 * 180.02562 * 16 14 2 19 19 S 1.81002 * 109.46951 * 180.02562 * 18 16 14 20 20 C 1.76201 * 99.99676 * 179.97438 * 19 18 16 21 21 H 1.07995 * 120.00463 * 359.97438 * 20 19 18 22 22 C 1.38796 * 119.99672 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00258 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00066 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47270 * 90.00166 * 24 22 20 26 26 H 1.48507 * 109.47220 * 210.00190 * 24 22 20 27 27 H 1.48505 * 109.47218 * 329.99892 * 24 22 20 28 28 H 1.09000 * 109.47312 * 300.00425 * 1 2 3 29 29 H 1.09004 * 109.46964 * 60.00223 * 1 2 3 30 30 H 1.08994 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 32 32 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 33 33 H 0.97000 * 120.00420 * 0.02562 * 5 4 2 34 34 H 1.07997 * 126.58300 * 0.03647 * 9 8 6 35 35 H 1.08999 * 109.46918 * 270.27411 * 11 10 9 36 36 H 1.09010 * 109.46979 * 30.26653 * 11 10 9 37 37 H 1.08991 * 109.47496 * 150.26668 * 11 10 9 38 38 H 1.08992 * 109.47467 * 89.99804 * 15 14 2 39 39 H 1.08998 * 109.47217 * 210.00148 * 15 14 2 40 40 H 1.09000 * 109.47078 * 329.99354 * 15 14 2 41 41 H 1.08994 * 109.46670 * 299.99876 * 18 16 14 42 42 H 1.08996 * 109.47004 * 59.99920 * 18 16 14 43 43 H 0.96996 * 120.00101 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1729 -1.4291 2.1908 7 8 3.5682 -1.8860 3.1416 8 6 5.6432 -1.5346 2.1321 9 6 6.4406 -2.1134 3.0780 10 7 7.7107 -2.0005 2.6403 11 6 8.9155 -2.4800 3.3222 12 7 7.6575 -1.3310 1.4095 13 7 6.4250 -1.0720 1.1415 14 7 2.0184 -0.6906 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.7933 -0.0356 -2.0832 17 8 3.0859 1.1256 -1.8916 18 6 3.2952 -0.7460 -3.3140 19 16 4.3015 0.3914 -4.2988 20 6 4.7441 -0.6696 -5.6341 21 1 4.3935 -1.6909 -5.6514 22 6 5.5442 -0.1930 -6.6632 23 7 5.8745 -0.9854 -7.6611 24 14 6.1513 1.5734 -6.6329 25 1 7.4547 1.6368 -5.9241 26 1 6.3205 2.0626 -8.0249 27 1 5.1613 2.4250 -5.9259 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7515 -0.1582 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 3.9824 -0.4622 0.4320 34 1 6.1158 -2.5750 3.9987 35 1 9.2976 -1.6975 3.9778 36 1 8.6713 -3.3624 3.9138 37 1 9.6737 -2.7368 2.5827 38 1 0.7376 -2.1444 -1.9992 39 1 2.4628 -2.5819 -1.9862 40 1 1.5295 -2.5968 -0.4707 41 1 3.9005 -1.6025 -3.0176 42 1 2.4472 -1.0881 -3.9072 43 1 6.4340 -0.6524 -8.3801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571823304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:30 Heat of formation + Delta-G solvation = 3.119222 kcal Electronic energy + Delta-G solvation = -27232.030534 eV Core-core repulsion = 23247.157057 eV Total energy + Delta-G solvation = -3984.873477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.23819 -41.30039 -40.25669 -37.71774 -35.73075 -35.24003 -34.66992 -33.19931 -32.01435 -30.26997 -28.92359 -27.87615 -27.82531 -27.35215 -24.40881 -23.22797 -22.82308 -21.51147 -20.49844 -19.64009 -19.14149 -18.37260 -17.46739 -17.30545 -17.21677 -17.11901 -16.81624 -16.60483 -16.16595 -15.70376 -15.66011 -15.21373 -14.95553 -14.60116 -14.56492 -14.18776 -14.03253 -13.89750 -13.78265 -13.50841 -13.39331 -13.24726 -13.13454 -13.04714 -13.01406 -12.82043 -12.59150 -12.25359 -11.95370 -11.85471 -11.36198 -11.33144 -11.17151 -10.92442 -10.51630 -10.47549 -10.10103 -9.76057 -8.98497 -8.51589 -6.21532 0.14194 0.56367 0.97681 1.18466 1.31380 1.45453 1.51707 1.53292 1.97711 2.14976 2.19049 2.25175 2.69497 2.86879 3.16689 3.46742 3.50897 3.73129 3.86931 3.93730 4.07069 4.12221 4.23207 4.25727 4.35901 4.42835 4.47108 4.59009 4.64350 4.67057 4.70964 4.77111 4.80451 4.92932 5.05727 5.22968 5.34385 5.45098 5.56119 5.70838 6.11084 6.19735 6.27218 6.83840 6.93913 7.04479 7.07634 8.60994 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.008803 B = 0.003562 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.866316 B = 7858.119070 C =10304.126986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.124 3.876 3 H 0.087 0.913 4 C 0.114 3.886 5 N -0.713 5.713 6 C 0.609 3.391 7 O -0.560 6.560 8 C -0.135 4.135 9 C 0.114 3.886 10 N -0.351 5.351 11 C 0.074 3.926 12 N -0.101 5.101 13 N -0.236 5.236 14 N -0.603 5.603 15 C 0.069 3.931 16 C 0.534 3.466 17 O -0.557 6.557 18 C -0.106 4.106 19 S -0.174 6.174 20 C -0.528 4.528 21 H 0.061 0.939 22 C 0.047 3.953 23 N -0.917 5.917 24 Si 0.912 3.088 25 H -0.265 1.265 26 H -0.257 1.257 27 H -0.236 1.236 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.404 0.596 34 H 0.246 0.754 35 H 0.109 0.891 36 H 0.135 0.865 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.299 -6.102 27.975 28.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 H 0.105 0.895 4 C -0.010 4.010 5 N -0.363 5.363 6 C 0.394 3.606 7 O -0.438 6.438 8 C -0.276 4.276 9 C -0.045 4.045 10 N -0.136 5.136 11 C -0.065 4.065 12 N -0.081 5.081 13 N -0.108 5.108 14 N -0.337 5.337 15 C -0.073 4.073 16 C 0.322 3.678 17 O -0.435 6.435 18 C -0.257 4.257 19 S 0.053 5.947 20 C -0.675 4.675 21 H 0.079 0.921 22 C -0.158 4.158 23 N -0.555 5.555 24 Si 0.734 3.266 25 H -0.189 1.189 26 H -0.181 1.181 27 H -0.160 1.160 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.239 0.761 34 H 0.262 0.738 35 H 0.127 0.873 36 H 0.153 0.847 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.357 -4.231 27.608 28.131 hybrid contribution 0.146 -1.129 -0.605 1.289 sum -3.211 -5.360 27.003 27.717 Atomic orbital electron populations 1.22003 0.90920 1.04163 1.03557 1.21456 0.96822 0.97244 0.82422 0.89518 1.21933 0.78471 1.02514 0.98075 1.45870 1.08713 1.58372 1.23303 1.16785 0.84218 0.77431 0.82130 1.90766 1.69016 1.50174 1.33892 1.21705 0.96073 1.13246 0.96558 1.23924 0.83030 0.96921 1.00614 1.50826 1.08740 1.38242 1.15749 1.22743 0.82559 1.02914 0.98280 1.82025 1.12251 1.15487 0.98368 1.74724 0.98483 1.14771 1.22871 1.47872 1.50157 1.13640 1.22038 1.22049 1.02002 0.79493 1.03772 1.19974 0.77815 0.86253 0.83773 1.90688 1.58269 1.18012 1.76514 1.23273 1.03208 1.02122 0.97085 1.84697 1.65540 1.20361 1.24104 1.22454 1.37148 0.99734 1.08191 0.92064 1.25529 0.94638 1.01876 0.93756 1.70013 1.36662 1.37894 1.10964 0.85899 0.80767 0.80626 0.79278 1.18944 1.18149 1.16003 0.89064 0.92547 0.90031 0.88856 0.89214 0.76078 0.73795 0.87268 0.84696 0.87800 0.90363 0.91257 0.88721 0.87674 0.87088 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.19 71.98 0.66 -1.37 16 2 C 0.12 2.50 2.80 44.99 0.13 2.63 16 3 H 0.09 2.22 6.90 -2.38 -0.02 2.21 16 4 C 0.11 2.10 4.92 86.38 0.42 2.53 16 5 N -0.71 -17.57 5.38 -466.27 -2.51 -20.08 16 6 C 0.61 15.54 7.82 86.69 0.68 16.22 16 7 O -0.56 -15.03 16.86 -4.00 -0.07 -15.10 16 8 C -0.14 -3.39 6.99 40.82 0.29 -3.10 16 9 C 0.11 1.84 11.31 83.85 0.95 2.79 16 10 N -0.35 -5.82 4.03 -368.60 -1.49 -7.30 16 11 C 0.07 0.32 11.51 127.77 1.47 1.79 16 12 N -0.10 -2.83 13.78 37.02 0.51 -2.32 16 13 N -0.24 -7.35 12.04 -50.00 -0.60 -7.95 16 14 N -0.60 -14.67 2.24 -822.59 -1.85 -16.51 16 15 C 0.07 1.22 9.30 127.77 1.19 2.41 16 16 C 0.53 18.78 7.40 87.66 0.65 19.43 16 17 O -0.56 -23.79 15.19 -3.02 -0.05 -23.84 16 18 C -0.11 -4.17 4.71 71.24 0.34 -3.84 16 19 S -0.17 -9.04 18.55 -56.49 -1.05 -10.09 16 20 C -0.53 -31.47 10.04 67.95 0.68 -30.78 16 21 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 22 C 0.05 2.84 5.50 84.86 0.47 3.31 16 23 N -0.92 -56.84 13.97 21.65 0.30 -56.54 16 24 Si 0.91 46.18 27.74 68.60 1.90 48.08 16 25 H -0.26 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.24 -11.92 6.74 99.48 0.67 -11.25 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.08 0.83 7.67 -2.39 -0.02 0.81 16 31 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.41 6.88 -2.39 -0.02 1.40 16 33 H 0.40 11.85 7.56 -92.71 -0.70 11.15 16 34 H 0.25 1.66 8.06 -2.91 -0.02 1.63 16 35 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.13 -0.36 8.14 -2.38 -0.02 -0.38 16 37 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.37 6.44 -2.39 -0.02 1.36 16 40 H 0.09 1.25 6.53 -2.39 -0.02 1.24 16 41 H 0.11 3.95 7.40 -2.40 -0.02 3.93 16 42 H 0.11 4.02 8.11 -2.40 -0.02 4.00 16 43 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -86.84 381.11 3.34 -83.50 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.31 Total: 16.14 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 7.92 Total: 12.01 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -5.63 Total: -110.71 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.11 Total: -38.94 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.90 Total: 48.08 kcal Atomic # 16 Polarization: -9.04 SS G_CDS: -1.05 Total: -10.09 kcal Total: -86.84 3.34 -83.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571823304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.624 kcal (2) G-P(sol) polarization free energy of solvation -86.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds