Wall clock time and date at job start Sat Apr 11 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47291 * 2 1 4 4 C 1.52999 * 109.46900 * 240.00450 * 2 1 3 5 5 C 1.53004 * 109.46981 * 174.99868 * 4 2 1 6 6 N 1.46495 * 109.46901 * 180.02562 * 5 4 2 7 7 C 1.34783 * 119.99871 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99725 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00073 * 180.02562 * 7 6 5 10 10 S 1.80993 * 109.47322 * 179.97438 * 9 7 6 11 11 C 1.76194 * 100.00207 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00254 * 0.02562 * 11 10 9 13 13 C 1.38806 * 119.99994 * 179.97438 * 11 10 9 14 14 N 1.31625 * 120.00153 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99879 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46908 * 60.00657 * 15 13 11 17 17 H 1.48502 * 109.46903 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47477 * 300.00424 * 15 13 11 19 19 N 1.46500 * 109.47073 * 120.00404 * 2 1 3 20 20 C 1.34775 * 119.99826 * 274.99917 * 19 2 1 21 21 O 1.21550 * 120.00462 * 359.97438 * 20 19 2 22 22 C 1.47879 * 119.99668 * 180.02562 * 20 19 2 23 23 N 1.34552 * 126.04497 * 0.02562 * 22 20 19 24 24 C 1.30874 * 107.26325 * 179.97438 * 23 22 20 25 25 N 1.34583 * 107.62758 * 0.02562 * 24 23 22 26 26 C 1.46493 * 125.74848 * 179.97438 * 25 24 23 27 27 N 1.28855 * 108.50255 * 0.02562 * 25 24 23 28 28 H 1.08999 * 109.46700 * 299.99751 * 1 2 3 29 29 H 1.08997 * 109.46927 * 59.99068 * 1 2 3 30 30 H 1.08994 * 109.47045 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47016 * 295.00151 * 4 2 1 32 32 H 1.08999 * 109.46938 * 55.00074 * 4 2 1 33 33 H 1.08997 * 109.47477 * 300.00001 * 5 4 2 34 34 H 1.08999 * 109.47116 * 60.00315 * 5 4 2 35 35 H 0.96997 * 120.00229 * 0.02562 * 6 5 4 36 36 H 1.08997 * 109.46925 * 300.00003 * 9 7 6 37 37 H 1.08999 * 109.46908 * 59.99852 * 9 7 6 38 38 H 0.96998 * 120.00363 * 179.97438 * 14 13 11 39 39 H 0.97002 * 119.99329 * 95.00329 * 19 2 1 40 40 H 1.07997 * 126.18255 * 180.02562 * 24 23 22 41 41 H 1.09006 * 109.47228 * 90.00228 * 26 25 24 42 42 H 1.08994 * 109.47452 * 210.00125 * 26 25 24 43 43 H 1.09006 * 109.47541 * 330.00599 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3138 6 7 4.0530 -1.3031 -2.5103 7 6 5.3740 -1.3393 -2.7756 8 8 6.1584 -0.8001 -2.0239 9 6 5.8762 -2.0485 -4.0068 10 16 7.6801 -1.9210 -4.0830 11 6 7.9870 -2.8095 -5.5732 12 1 7.1632 -3.2316 -6.1297 13 6 9.2874 -2.9661 -6.0326 14 7 10.2914 -2.4512 -5.3547 15 14 9.6128 -3.9087 -7.6121 16 1 8.9120 -3.2427 -8.7393 17 1 11.0728 -3.9324 -7.8826 18 1 9.1124 -5.2997 -7.4706 19 7 2.0184 -0.6907 1.1961 20 6 2.1471 -0.0184 2.3571 21 8 1.8585 1.1611 2.4117 22 6 2.6405 -0.7155 3.5643 23 7 2.9948 -2.0113 3.6411 24 6 3.3739 -2.2379 4.8731 25 7 3.2533 -1.0841 5.5554 26 6 3.5713 -0.8905 6.9722 27 7 2.8099 -0.1788 4.7528 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7516 -1.7714 -1.2057 32 1 1.6053 -0.2615 -2.1370 33 1 3.8533 0.4371 -1.3574 34 1 3.9995 -1.0728 -0.4261 35 1 3.4257 -1.7340 -3.1116 36 1 5.5874 -3.0987 -3.9643 37 1 5.4419 -1.5878 -4.8940 38 1 11.2002 -2.5609 -5.6755 39 1 2.2491 -1.6319 1.1524 40 1 3.7208 -3.1804 5.2703 41 1 4.6152 -0.5932 7.0730 42 1 2.9303 -0.1117 7.3853 43 1 3.4051 -1.8224 7.5127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580300555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:01 Heat of formation + Delta-G solvation = -18.427973 kcal Electronic energy + Delta-G solvation = -25833.025808 eV Core-core repulsion = 21847.217975 eV Total energy + Delta-G solvation = -3985.807833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.46044 -40.95293 -40.47992 -37.73882 -35.71349 -35.49057 -34.57304 -32.85976 -32.79547 -31.34767 -29.22582 -28.66166 -27.64038 -25.47550 -24.28109 -23.30175 -22.18193 -21.69500 -21.51378 -19.84784 -19.23735 -17.84254 -17.78778 -17.61931 -17.31131 -17.19204 -16.86645 -16.67290 -16.12272 -15.88058 -15.72440 -15.20776 -15.03837 -14.79570 -14.46700 -14.42695 -14.02383 -13.99661 -13.58479 -13.54108 -13.15872 -13.01550 -12.88243 -12.85422 -12.65631 -12.44072 -12.40196 -11.95127 -11.72993 -11.58796 -11.47036 -11.44360 -11.11702 -10.96260 -10.64791 -10.26393 -10.23508 -10.07946 -8.66173 -8.33243 -6.11766 0.26946 1.08550 1.27867 1.28455 1.45204 1.48126 1.57874 1.62773 2.03557 2.22168 2.26680 2.30631 3.00680 3.07936 3.33245 3.46488 3.73547 3.80101 3.89051 4.04647 4.09460 4.32555 4.32824 4.38621 4.42400 4.46079 4.53063 4.63196 4.67474 4.79705 4.83309 4.89615 5.01283 5.12174 5.28266 5.32166 5.41630 5.42718 5.44391 5.62214 6.20868 6.29414 6.54467 6.89897 7.07540 7.07651 7.27878 8.75772 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.001897 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.353847 B =14758.481150 C =16139.169484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.075 0.925 4 C -0.121 4.121 5 C 0.119 3.881 6 N -0.708 5.708 7 C 0.530 3.470 8 O -0.571 6.571 9 C -0.128 4.128 10 S -0.158 6.158 11 C -0.545 4.545 12 H 0.085 0.915 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.261 1.261 19 N -0.692 5.692 20 C 0.613 3.387 21 O -0.560 6.560 22 C 0.112 3.888 23 N -0.509 5.509 24 C 0.205 3.795 25 N -0.300 5.300 26 C 0.073 3.927 27 N -0.287 5.287 28 H 0.041 0.959 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.420 0.580 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.271 0.729 39 H 0.417 0.583 40 H 0.279 0.721 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.456 -3.344 20.854 31.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.093 0.907 4 C -0.159 4.159 5 C -0.005 4.005 6 N -0.363 5.363 7 C 0.316 3.684 8 O -0.449 6.449 9 C -0.279 4.279 10 S 0.069 5.931 11 C -0.693 4.693 12 H 0.103 0.897 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.821 3.179 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.185 1.185 19 N -0.345 5.345 20 C 0.395 3.605 21 O -0.436 6.436 22 C -0.167 4.167 23 N -0.235 5.235 24 C -0.090 4.090 25 N -0.095 5.095 26 C -0.065 4.065 27 N -0.129 5.129 28 H 0.060 0.940 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.258 0.742 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.255 0.745 40 H 0.294 0.706 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -22.366 -1.124 22.027 31.412 hybrid contribution -0.104 -1.443 -1.387 2.005 sum -22.470 -2.567 20.640 30.618 Atomic orbital electron populations 1.22108 0.92865 1.03453 1.02861 1.21090 0.95527 0.96873 0.82554 0.90709 1.22052 0.91742 1.03851 0.98204 1.21365 0.95622 0.96500 0.87039 1.45668 1.06024 1.57227 1.27376 1.20153 0.83002 0.79286 0.85963 1.90702 1.56797 1.46802 1.50620 1.23364 1.00813 1.04501 0.99197 1.85643 0.99960 1.73435 1.34023 1.23179 0.96231 1.40118 1.09797 0.89710 1.26165 0.94691 0.96569 1.01911 1.70185 0.99923 1.44242 1.40537 0.84984 0.77315 0.78667 0.76901 1.18630 1.20520 1.18506 1.45798 1.65546 1.14899 1.08240 1.16518 0.77141 0.84923 0.81878 1.90790 1.51594 1.16257 1.84991 1.23665 1.08648 0.90379 0.93999 1.71217 1.18411 1.13582 1.20269 1.27487 0.99472 0.95036 0.86977 1.47805 1.42519 1.06486 1.12728 1.22770 1.04370 1.07877 0.71490 1.74248 1.16707 1.19841 1.02089 0.94008 0.89162 0.90573 0.87704 0.86527 0.93381 0.93106 0.74210 0.86890 0.86997 0.92035 0.74528 0.70605 0.87854 0.88342 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.48 71.98 0.68 -1.32 16 2 C 0.14 2.37 2.57 44.99 0.12 2.49 16 3 H 0.07 1.59 7.58 -2.39 -0.02 1.57 16 4 C -0.12 -1.47 4.87 30.60 0.15 -1.32 16 5 C 0.12 2.67 5.56 86.38 0.48 3.15 16 6 N -0.71 -17.14 5.56 -463.06 -2.57 -19.72 16 7 C 0.53 19.77 7.85 87.66 0.69 20.46 16 8 O -0.57 -27.52 15.86 -3.03 -0.05 -27.57 16 9 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 10 S -0.16 -8.86 20.57 -56.49 -1.16 -10.02 16 11 C -0.55 -31.20 9.50 67.96 0.65 -30.55 16 12 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 13 C 0.01 0.64 5.49 84.86 0.47 1.11 16 14 N -0.91 -56.53 13.22 21.65 0.29 -56.25 16 15 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 16 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 N -0.69 -13.93 4.53 -445.37 -2.02 -15.94 16 20 C 0.61 16.87 7.80 86.80 0.68 17.55 16 21 O -0.56 -19.13 16.75 -3.87 -0.06 -19.20 16 22 C 0.11 2.91 7.96 137.13 1.09 4.00 16 23 N -0.51 -10.49 11.09 -193.03 -2.14 -12.64 16 24 C 0.20 2.43 12.62 180.30 2.27 4.70 16 25 N -0.30 -4.13 3.72 -373.47 -1.39 -5.52 16 26 C 0.07 0.15 11.38 127.77 1.45 1.60 16 27 N -0.29 -7.07 12.08 -52.43 -0.63 -7.71 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.34 7.75 -2.39 -0.02 1.32 16 35 H 0.42 6.56 8.47 -92.71 -0.79 5.77 16 36 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 37 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 38 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.42 7.23 8.31 -92.71 -0.77 6.46 16 40 H 0.28 -0.14 8.06 -2.91 -0.02 -0.17 16 41 H 0.10 0.03 8.14 -2.38 -0.02 0.01 16 42 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.15 -0.93 8.14 -2.38 -0.02 -0.95 16 Total: -1.00 -97.36 391.33 0.94 -96.42 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.50 Total: 15.27 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 9.16 Total: 17.28 kcal Atomic # 7 Polarization: -109.30 SS G_CDS: -8.47 Total: -117.77 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -0.11 Total: -46.77 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.02 kcal Total: -97.36 0.94 -96.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580300555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.990 kcal (2) G-P(sol) polarization free energy of solvation -97.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds