Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47414 * 2 1 4 4 C 1.52999 * 109.47146 * 240.00120 * 2 1 3 5 5 C 1.53007 * 109.47121 * 175.00245 * 4 2 1 6 6 N 1.46500 * 109.47078 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99722 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00442 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99762 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.47081 * 180.02562 * 9 7 6 11 11 C 1.34429 * 126.81895 * 124.99841 * 10 9 7 12 12 N 1.30837 * 108.07952 * 180.02562 * 11 10 9 13 13 C 1.33246 * 109.82318 * 359.97438 * 12 11 10 14 14 N 1.30712 * 108.94935 * 0.27015 * 13 12 11 15 15 N 1.46496 * 109.47111 * 120.00314 * 2 1 3 16 16 C 1.34773 * 120.00171 * 275.00087 * 15 2 1 17 17 O 1.21282 * 119.99920 * 359.97438 * 16 15 2 18 18 C 1.50704 * 120.00579 * 179.97438 * 16 15 2 19 19 S 1.80997 * 109.47534 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00132 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99893 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00039 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99758 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99790 * 180.02562 * 22 20 19 25 25 H 1.48489 * 109.47289 * 60.00458 * 24 22 20 26 26 H 1.48498 * 109.46663 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47104 * 300.00008 * 24 22 20 28 28 H 1.09001 * 109.47181 * 299.99797 * 1 2 3 29 29 H 1.09002 * 109.47002 * 59.99759 * 1 2 3 30 30 H 1.08998 * 109.47452 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47279 * 55.00092 * 4 2 1 32 32 H 1.08995 * 109.47424 * 295.00270 * 4 2 1 33 33 H 1.08993 * 109.47323 * 60.00013 * 5 4 2 34 34 H 1.09001 * 109.46543 * 299.99780 * 5 4 2 35 35 H 0.96997 * 120.00182 * 0.02562 * 6 5 4 36 36 H 1.09002 * 109.47196 * 60.00345 * 9 7 6 37 37 H 1.08995 * 109.47509 * 300.00521 * 9 7 6 38 38 H 1.08000 * 125.96340 * 359.97438 * 11 10 9 39 39 H 1.08002 * 125.52127 * 179.97438 * 13 12 11 40 40 H 0.97003 * 120.00089 * 94.99846 * 15 2 1 41 41 H 1.08994 * 109.47287 * 300.00339 * 18 16 15 42 42 H 1.09008 * 109.46603 * 60.00289 * 18 16 15 43 43 H 0.97010 * 119.99763 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3739 -1.3386 -2.7758 8 8 6.1583 -0.7995 -2.0242 9 6 5.8763 -2.0490 -4.0064 10 7 7.3363 -1.9455 -4.0681 11 6 8.2124 -2.9604 -4.1662 12 7 9.4187 -2.4543 -4.1928 13 6 9.3531 -1.1258 -4.1146 14 7 8.0990 -0.7668 -4.0311 15 7 2.0182 -0.6907 1.1961 16 6 2.1469 -0.0184 2.3571 17 8 1.8589 1.1584 2.4115 18 6 2.6487 -0.7290 3.5877 19 16 2.7104 0.4342 4.9731 20 6 3.3135 -0.6311 6.2404 21 1 3.5228 -1.6675 6.0204 22 6 3.5206 -0.1380 7.5213 23 7 3.2660 1.1253 7.7892 24 14 4.1607 -1.2673 8.8646 25 1 5.4867 -1.8054 8.4687 26 1 4.2939 -0.5036 10.1312 27 1 3.2094 -2.3904 9.0620 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6053 -0.2617 -2.1370 32 1 1.7516 -1.7714 -1.2057 33 1 3.9994 -1.0728 -0.4260 34 1 3.8531 0.4370 -1.3573 35 1 3.4258 -1.7342 -3.1115 36 1 5.4413 -1.5897 -4.8941 37 1 5.5883 -3.0993 -3.9627 38 1 7.9640 -4.0103 -4.2138 39 1 10.1993 -0.4547 -4.1150 40 1 2.2489 -1.6318 1.1525 41 1 1.9759 -1.5508 3.8325 42 1 3.6480 -1.1214 3.3986 43 1 3.4104 1.4699 8.6845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580471014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = 17.660890 kcal Electronic energy + Delta-G solvation = -25813.898516 eV Core-core repulsion = 21829.655613 eV Total energy + Delta-G solvation = -3984.242903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.40531 -40.14670 -39.41615 -36.75573 -34.82606 -34.44916 -32.42325 -31.93940 -31.51909 -30.02001 -28.57754 -28.03493 -25.47892 -24.03144 -22.48938 -22.33150 -21.71698 -20.83967 -20.37748 -18.01989 -17.89685 -17.72120 -16.71642 -16.36607 -16.24333 -15.94278 -15.52014 -15.16909 -14.88869 -14.80005 -14.67958 -14.36315 -14.06039 -13.95716 -13.68299 -13.27990 -13.15112 -12.96363 -12.65889 -12.24042 -12.20145 -11.98549 -11.83788 -11.61686 -11.16021 -11.03969 -11.03049 -10.76451 -10.71110 -10.35606 -10.10896 -9.92546 -9.82033 -9.57158 -9.41110 -9.06088 -8.95773 -8.23916 -6.49447 -6.20864 -3.91503 1.24261 1.75595 2.07111 2.59701 2.68896 3.01238 3.07281 3.24185 3.27962 3.31211 3.68838 3.87609 3.96202 4.07003 4.21161 4.33916 4.35833 4.50673 4.58652 4.64526 4.86536 5.12336 5.13945 5.14616 5.24789 5.27224 5.48175 5.54781 5.62088 5.65958 5.83588 5.87909 5.89350 5.95128 6.09385 6.11454 6.13862 6.33644 6.60762 6.91102 7.59720 7.65918 7.68059 7.74499 8.35554 8.58968 9.24291 10.86497 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.002085 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.410944 B =13428.338530 C =15550.969186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.136 4.136 5 C 0.118 3.882 6 N -0.728 5.728 7 C 0.495 3.505 8 O -0.502 6.502 9 C 0.113 3.887 10 N -0.373 5.373 11 C 0.255 3.745 12 N -0.543 5.543 13 C 0.195 3.805 14 N -0.289 5.289 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.515 6.515 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.401 0.599 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.220 0.780 39 H 0.218 0.782 40 H 0.397 0.603 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 -11.728 -29.942 32.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.110 0.890 4 C -0.175 4.175 5 C -0.005 4.005 6 N -0.382 5.382 7 C 0.278 3.722 8 O -0.374 6.374 9 C -0.014 4.014 10 N -0.165 5.165 11 C -0.042 4.042 12 N -0.270 5.270 13 C -0.108 4.108 14 N -0.115 5.115 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.389 6.389 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.235 0.765 36 H 0.137 0.863 37 H 0.149 0.851 38 H 0.236 0.764 39 H 0.234 0.766 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.540 -8.621 -29.103 30.358 hybrid contribution 0.300 -3.011 0.545 3.075 sum -0.240 -11.632 -28.558 30.837 Atomic orbital electron populations 1.22171 0.94941 1.02104 1.02893 1.20772 0.94213 0.97779 0.83179 0.89046 1.22104 0.94297 1.02106 0.98956 1.21455 0.93732 0.98150 0.87200 1.45897 1.06891 1.57807 1.27638 1.20452 0.82923 0.81640 0.87202 1.90874 1.54942 1.43377 1.48206 1.21552 0.76828 1.03937 0.99080 1.49991 1.06586 1.05161 1.54768 1.26098 0.84719 0.96469 0.96933 1.70544 1.22479 1.09293 1.24664 1.26069 0.94880 0.91486 0.98405 1.78218 1.04463 1.05258 1.23603 1.46127 1.69590 1.13837 1.09589 1.20305 0.76703 0.87226 0.83762 1.90703 1.48146 1.15717 1.84369 1.23539 1.03640 1.04877 0.98443 1.85388 1.86269 1.12880 0.98735 1.22822 1.51144 0.98094 0.96385 0.91012 1.24993 0.95084 0.95548 0.97960 1.70008 1.45451 1.13197 1.21613 0.86223 0.79330 0.80000 0.79950 1.19928 1.20793 1.19957 0.91383 0.91858 0.92526 0.89662 0.90558 0.90725 0.90884 0.76539 0.86304 0.85128 0.76416 0.76600 0.76968 0.89273 0.89285 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.15 0.35 -1.15 16 2 C 0.15 1.44 2.57 -67.94 -0.17 1.26 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 4 C -0.14 -0.77 4.87 -26.73 -0.13 -0.90 16 5 C 0.12 0.94 5.56 -4.04 -0.02 0.92 16 6 N -0.73 -3.93 5.56 -60.29 -0.33 -4.26 16 7 C 0.50 4.11 7.87 -10.98 -0.09 4.03 16 8 O -0.50 -7.35 15.73 5.56 0.09 -7.26 16 9 C 0.11 0.46 7.03 -5.19 -0.04 0.43 16 10 N -0.37 -3.11 3.41 -63.81 -0.22 -3.33 16 11 C 0.25 1.83 12.63 -90.65 -1.14 0.69 16 12 N -0.54 -5.56 11.19 -15.83 -0.18 -5.74 16 13 C 0.19 2.02 13.03 -91.81 -1.20 0.83 16 14 N -0.29 -3.43 11.80 29.29 0.35 -3.08 16 15 N -0.74 -8.90 4.53 -53.81 -0.24 -9.15 16 16 C 0.53 9.64 7.81 -10.99 -0.09 9.56 16 17 O -0.52 -11.43 15.52 5.56 0.09 -11.34 16 18 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.41 9.50 30.94 0.29 -15.11 16 21 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 24 Si 0.92 21.62 29.55 -169.99 -5.02 16.60 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.76 7.75 -51.93 -0.40 0.35 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 0.52 8.47 -40.82 -0.35 0.17 16 36 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.13 -0.07 8.09 -51.93 -0.42 -0.49 16 38 H 0.22 0.42 8.06 -52.49 -0.42 0.00 16 39 H 0.22 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 41 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 42 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 43 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -43.21 390.41 -9.29 -52.50 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.11 Total: -1.01 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.10 Total: -0.32 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.11 Total: -51.22 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.17 Total: -18.61 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -43.21 -9.29 -52.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580471014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.160 kcal (2) G-P(sol) polarization free energy of solvation -43.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds