Wall clock time and date at job start Sat Apr 11 2020 06:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.47414 * 2 1 4 4 C 1.52999 * 109.47146 * 240.00120 * 2 1 3 5 5 C 1.53007 * 109.47121 * 175.00245 * 4 2 1 6 6 N 1.46500 * 109.47078 * 180.02562 * 5 4 2 7 7 C 1.34773 * 119.99722 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00442 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99762 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.47081 * 180.02562 * 9 7 6 11 11 C 1.34429 * 126.81895 * 124.99841 * 10 9 7 12 12 N 1.30837 * 108.07952 * 180.02562 * 11 10 9 13 13 C 1.33246 * 109.82318 * 359.97438 * 12 11 10 14 14 N 1.30712 * 108.94935 * 0.27015 * 13 12 11 15 15 N 1.46496 * 109.47111 * 120.00314 * 2 1 3 16 16 C 1.34773 * 120.00171 * 275.00087 * 15 2 1 17 17 O 1.21282 * 119.99920 * 359.97438 * 16 15 2 18 18 C 1.50704 * 120.00579 * 179.97438 * 16 15 2 19 19 S 1.80997 * 109.47534 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00132 * 180.02562 * 19 18 16 21 21 H 1.08004 * 119.99893 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00039 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99758 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99790 * 180.02562 * 22 20 19 25 25 H 1.48489 * 109.47289 * 60.00458 * 24 22 20 26 26 H 1.48498 * 109.46663 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47104 * 300.00008 * 24 22 20 28 28 H 1.09001 * 109.47181 * 299.99797 * 1 2 3 29 29 H 1.09002 * 109.47002 * 59.99759 * 1 2 3 30 30 H 1.08998 * 109.47452 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47279 * 55.00092 * 4 2 1 32 32 H 1.08995 * 109.47424 * 295.00270 * 4 2 1 33 33 H 1.08993 * 109.47323 * 60.00013 * 5 4 2 34 34 H 1.09001 * 109.46543 * 299.99780 * 5 4 2 35 35 H 0.96997 * 120.00182 * 0.02562 * 6 5 4 36 36 H 1.09002 * 109.47196 * 60.00345 * 9 7 6 37 37 H 1.08995 * 109.47509 * 300.00521 * 9 7 6 38 38 H 1.08000 * 125.96340 * 359.97438 * 11 10 9 39 39 H 1.08002 * 125.52127 * 179.97438 * 13 12 11 40 40 H 0.97003 * 120.00089 * 94.99846 * 15 2 1 41 41 H 1.08994 * 109.47287 * 300.00339 * 18 16 15 42 42 H 1.09008 * 109.46603 * 60.00289 * 18 16 15 43 43 H 0.97010 * 119.99763 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3034 -2.5102 7 6 5.3739 -1.3386 -2.7758 8 8 6.1583 -0.7995 -2.0242 9 6 5.8763 -2.0490 -4.0064 10 7 7.3363 -1.9455 -4.0681 11 6 8.2124 -2.9604 -4.1662 12 7 9.4187 -2.4543 -4.1928 13 6 9.3531 -1.1258 -4.1146 14 7 8.0990 -0.7668 -4.0311 15 7 2.0182 -0.6907 1.1961 16 6 2.1469 -0.0184 2.3571 17 8 1.8589 1.1584 2.4115 18 6 2.6487 -0.7290 3.5877 19 16 2.7104 0.4342 4.9731 20 6 3.3135 -0.6311 6.2404 21 1 3.5228 -1.6675 6.0204 22 6 3.5206 -0.1380 7.5213 23 7 3.2660 1.1253 7.7892 24 14 4.1607 -1.2673 8.8646 25 1 5.4867 -1.8054 8.4687 26 1 4.2939 -0.5036 10.1312 27 1 3.2094 -2.3904 9.0620 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6053 -0.2617 -2.1370 32 1 1.7516 -1.7714 -1.2057 33 1 3.9994 -1.0728 -0.4260 34 1 3.8531 0.4370 -1.3573 35 1 3.4258 -1.7342 -3.1115 36 1 5.4413 -1.5897 -4.8941 37 1 5.5883 -3.0993 -3.9627 38 1 7.9640 -4.0103 -4.2138 39 1 10.1993 -0.4547 -4.1150 40 1 2.2489 -1.6318 1.1525 41 1 1.9759 -1.5508 3.8325 42 1 3.6480 -1.1214 3.3986 43 1 3.4104 1.4699 8.6845 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580471014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:05 Heat of formation + Delta-G solvation = -16.161540 kcal Electronic energy + Delta-G solvation = -25815.365166 eV Core-core repulsion = 21829.655613 eV Total energy + Delta-G solvation = -3985.709554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.99766 -40.96700 -40.56521 -37.71774 -35.68043 -35.00409 -34.60757 -33.07677 -32.16890 -30.85034 -29.88862 -28.56088 -27.67971 -24.72589 -23.15372 -22.89295 -22.56994 -21.71826 -21.40136 -19.86102 -18.52969 -18.35988 -17.95747 -17.35168 -16.92226 -16.89963 -16.74546 -16.39891 -16.23998 -15.93202 -15.68830 -15.19153 -14.93478 -14.82170 -14.73302 -14.51025 -14.36676 -13.98280 -13.66407 -13.32686 -13.19659 -13.03089 -12.88522 -12.79614 -12.63040 -12.45274 -12.41504 -11.92638 -11.75669 -11.39435 -11.15110 -11.01836 -10.93014 -10.78715 -10.54067 -10.30692 -10.24543 -10.07963 -8.69263 -8.36651 -6.15087 0.67904 1.25098 1.33570 1.42012 1.45039 1.49507 1.55021 1.61572 2.00750 2.11472 2.24753 2.30247 2.97233 3.30209 3.49507 3.54307 3.71142 3.74509 3.88948 4.00966 4.07624 4.10522 4.16865 4.26509 4.40445 4.43192 4.46936 4.48659 4.63763 4.82039 4.89233 5.02684 5.13777 5.25182 5.32587 5.35088 5.38878 5.45310 5.55693 5.88990 6.17177 6.48380 6.51574 7.04229 7.11870 7.20745 7.26377 8.72370 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.002085 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.410944 B =13428.338530 C =15550.969186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.059 0.941 4 C -0.115 4.115 5 C 0.120 3.880 6 N -0.704 5.704 7 C 0.488 3.512 8 O -0.577 6.577 9 C 0.112 3.888 10 N -0.379 5.379 11 C 0.264 3.736 12 N -0.580 5.580 13 C 0.182 3.818 14 N -0.339 5.339 15 N -0.709 5.709 16 C 0.534 3.466 17 O -0.566 6.566 18 C -0.131 4.131 19 S -0.153 6.153 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.259 1.259 28 H 0.027 0.973 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.426 0.574 36 H 0.148 0.852 37 H 0.189 0.811 38 H 0.271 0.729 39 H 0.230 0.770 40 H 0.415 0.585 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.817 -15.967 -32.313 36.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.035 3.965 3 H 0.078 0.922 4 C -0.153 4.153 5 C -0.005 4.005 6 N -0.359 5.359 7 C 0.274 3.726 8 O -0.455 6.455 9 C -0.012 4.012 10 N -0.170 5.170 11 C -0.031 4.031 12 N -0.307 5.307 13 C -0.120 4.120 14 N -0.166 5.166 15 N -0.364 5.364 16 C 0.320 3.680 17 O -0.444 6.444 18 C -0.282 4.282 19 S 0.074 5.926 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.184 1.184 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.265 0.735 36 H 0.166 0.834 37 H 0.206 0.794 38 H 0.286 0.714 39 H 0.246 0.754 40 H 0.252 0.748 41 H 0.130 0.870 42 H 0.121 0.879 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.789 -12.936 -31.565 34.160 hybrid contribution 0.587 -1.735 1.133 2.154 sum -1.202 -14.671 -30.432 33.805 Atomic orbital electron populations 1.22118 0.93789 1.03352 1.02240 1.21007 0.95051 0.96749 0.83706 0.92234 1.21994 0.92013 1.03850 0.97444 1.21247 0.95426 0.96297 0.87522 1.45642 1.06708 1.56641 1.26931 1.21299 0.82989 0.80673 0.87662 1.90857 1.56885 1.46715 1.50996 1.22049 0.74605 1.07038 0.97504 1.50195 1.08081 1.04341 1.54391 1.27073 0.83692 0.98056 0.94317 1.70524 1.24616 1.09255 1.26346 1.26439 0.95199 0.92216 0.98194 1.78106 1.05352 1.08002 1.25178 1.45895 1.67514 1.14511 1.08440 1.20016 0.76654 0.86575 0.84804 1.90690 1.50712 1.17774 1.85214 1.23385 1.05243 1.03278 0.96288 1.85572 1.86662 1.17513 1.02892 1.23167 1.51110 0.98411 0.96838 0.89966 1.26158 0.95056 0.97257 1.00809 1.70182 1.46752 1.15489 1.22330 0.84994 0.79031 0.77778 0.76135 1.18857 1.20316 1.18392 0.95347 0.89287 0.90218 0.86592 0.87045 0.93134 0.94251 0.73502 0.83403 0.79352 0.71362 0.75363 0.74791 0.87036 0.87873 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.48 71.98 0.68 -1.88 16 2 C 0.14 2.54 2.57 44.99 0.12 2.66 16 3 H 0.06 1.51 7.58 -2.39 -0.02 1.49 16 4 C -0.12 -0.87 4.87 30.60 0.15 -0.72 16 5 C 0.12 1.74 5.56 86.38 0.48 2.22 16 6 N -0.70 -5.47 5.56 -463.05 -2.57 -8.04 16 7 C 0.49 7.24 7.87 87.66 0.69 7.93 16 8 O -0.58 -17.33 15.73 -3.03 -0.05 -17.38 16 9 C 0.11 0.50 7.03 85.63 0.60 1.10 16 10 N -0.38 -5.59 3.41 -355.80 -1.21 -6.81 16 11 C 0.26 3.15 12.63 180.36 2.28 5.43 16 12 N -0.58 -11.51 11.19 -203.99 -2.28 -13.80 16 13 C 0.18 3.92 13.03 180.76 2.36 6.28 16 14 N -0.34 -8.17 11.80 -61.24 -0.72 -8.89 16 15 N -0.71 -16.29 4.53 -442.56 -2.00 -18.30 16 16 C 0.53 19.58 7.81 87.66 0.68 20.27 16 17 O -0.57 -26.40 15.52 -3.04 -0.05 -26.44 16 18 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 19 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 20 C -0.55 -31.89 9.50 67.95 0.65 -31.24 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.69 5.49 84.86 0.47 1.16 16 23 N -0.91 -57.02 13.22 21.65 0.29 -56.74 16 24 Si 1.00 44.36 29.55 68.60 2.03 46.38 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 28 H 0.03 0.69 8.14 -2.39 -0.02 0.68 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.05 0.99 7.75 -2.39 -0.02 0.97 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.43 -1.10 8.47 -92.71 -0.79 -1.88 16 36 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 37 H 0.19 -1.41 8.09 -2.39 -0.02 -1.43 16 38 H 0.27 -0.23 8.06 -2.91 -0.02 -0.25 16 39 H 0.23 3.61 8.06 -2.91 -0.02 3.59 16 40 H 0.41 6.55 8.60 -92.71 -0.80 5.75 16 41 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 42 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 43 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 Total: -1.00 -105.57 390.41 1.31 -104.26 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -0.53 Total: 7.25 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 9.59 Total: 8.38 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -8.51 Total: -112.56 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.09 Total: -43.82 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -105.57 1.31 -104.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580471014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.097 kcal (2) G-P(sol) polarization free energy of solvation -105.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds