Wall clock time and date at job start Sat Apr 11 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47009 * 2 1 4 4 C 1.36257 * 126.39832 * 269.97061 * 3 2 1 5 5 O 1.35207 * 125.01349 * 0.06560 * 4 3 2 6 6 N 1.30920 * 109.97633 * 180.02562 * 4 3 2 7 7 C 1.35561 * 109.70990 * 359.97438 * 6 4 3 8 8 C 1.40016 * 133.26676 * 179.97438 * 7 6 4 9 9 C 1.36210 * 120.09195 * 180.02562 * 8 7 6 10 10 C 1.40160 * 120.48800 * 359.97438 * 9 8 7 11 11 C 1.47489 * 119.94650 * 179.72970 * 10 9 8 12 12 O 1.21630 * 120.00117 * 179.97438 * 11 10 9 13 13 N 1.34775 * 120.00239 * 359.97438 * 11 10 9 14 14 C 1.40531 * 120.00271 * 180.02562 * 13 11 10 15 15 C 1.40663 * 126.08759 * 359.68667 * 14 13 11 16 16 N 1.30903 * 108.38993 * 179.87786 * 15 14 13 17 17 N 1.40061 * 108.41366 * 0.38689 * 16 15 14 18 18 C 1.37315 * 126.07157 * 179.71688 * 17 16 15 19 19 H 1.08001 * 119.99835 * 174.17117 * 18 17 16 20 20 C 1.38992 * 119.99838 * 354.17852 * 18 17 16 21 21 N 1.31287 * 119.99892 * 5.94170 * 20 18 17 22 22 Si 1.86795 * 119.99961 * 185.93834 * 20 18 17 23 23 H 1.48495 * 109.47123 * 94.97996 * 22 20 18 24 24 H 1.48500 * 109.47123 * 214.98034 * 22 20 18 25 25 H 1.48504 * 109.47033 * 334.98216 * 22 20 18 26 26 C 1.35698 * 126.08722 * 179.97438 * 14 13 11 27 27 C 1.39538 * 120.10583 * 359.97438 * 10 9 8 28 28 C 1.38220 * 119.58671 * 0.02562 * 27 10 9 29 29 H 1.08997 * 109.47052 * 300.00181 * 1 2 3 30 30 H 1.08997 * 109.46753 * 60.00031 * 1 2 3 31 31 H 1.08998 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47672 * 240.00180 * 2 1 3 33 33 H 1.08995 * 109.47476 * 119.99795 * 2 1 3 34 34 H 0.96701 * 114.00427 * 89.98770 * 5 4 3 35 35 H 1.08000 * 119.95465 * 0.03028 * 8 7 6 36 36 H 1.07993 * 119.75460 * 179.97438 * 9 8 7 37 37 H 0.96998 * 119.99999 * 0.02562 * 13 11 10 38 38 H 1.08004 * 125.79960 * 0.02562 * 15 14 13 39 39 H 0.97005 * 120.00223 * 180.02562 * 21 20 18 40 40 H 1.08009 * 126.24608 * 359.94559 * 26 14 13 41 41 H 1.07996 * 120.20527 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2883 2.1433 -1.0967 5 8 2.1441 1.7372 -2.3783 6 7 2.7072 3.3272 -0.7266 7 6 2.7323 3.4008 0.6268 8 6 3.0903 4.4122 1.5264 9 6 3.0117 4.1919 2.8682 10 6 2.5730 2.9555 3.3614 11 6 2.4982 2.7279 4.8167 12 8 2.1171 1.6555 5.2458 13 7 2.8521 3.7082 5.6712 14 6 2.7813 3.4912 7.0578 15 6 2.3561 2.3092 7.6908 16 7 2.4301 2.4847 8.9859 17 7 2.8950 3.7830 9.2306 18 6 3.1017 4.3486 10.4647 19 1 3.5525 5.3270 10.5416 20 6 2.7308 3.6619 11.6148 21 7 2.2916 2.4276 11.5295 22 14 2.8574 4.4951 13.2818 23 1 1.5442 5.0891 13.6393 24 1 3.2434 3.4933 14.3079 25 1 3.8854 5.5653 13.2235 26 6 3.1060 4.3864 8.0246 27 6 2.2116 1.9378 2.4777 28 6 2.2899 2.1573 1.1153 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.2695 1.9141 -2.7509 35 1 3.4291 5.3684 1.1558 36 1 3.2896 4.9758 3.5572 37 1 3.1556 4.5636 5.3291 38 1 2.0270 1.4091 7.1929 39 1 2.0324 1.9484 12.3321 40 1 3.4656 5.3928 7.8682 41 1 1.8737 0.9844 2.8560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583623292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:15 Heat of formation + Delta-G solvation = 95.989278 kcal Electronic energy + Delta-G solvation = -27842.167730 eV Core-core repulsion = 23725.877449 eV Total energy + Delta-G solvation = -4116.290280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.50102 -40.02886 -38.99431 -38.08790 -36.54324 -35.29220 -34.28680 -33.17199 -31.55737 -30.33744 -29.79484 -29.49176 -27.55426 -25.02719 -24.35383 -23.64896 -22.90087 -21.12602 -20.95705 -20.52281 -19.44311 -18.75022 -18.05337 -17.56776 -17.16358 -16.74540 -15.75716 -15.44097 -15.42481 -14.94169 -14.74007 -14.55040 -14.31689 -14.16716 -14.00476 -13.65410 -13.37579 -13.27792 -13.10966 -12.87818 -12.73919 -12.28014 -11.83728 -11.68910 -11.61519 -11.53154 -11.40552 -11.26233 -10.93411 -10.73397 -10.52685 -10.24011 -10.16001 -9.29354 -9.16920 -8.80676 -8.61898 -8.31214 -8.05239 -6.68923 -6.56431 -4.22490 0.41549 1.20563 1.84025 2.16473 2.92023 3.05179 3.09034 3.10700 3.28034 3.53887 3.59579 3.86511 3.92621 4.10713 4.18371 4.47022 4.48785 4.66704 4.72833 4.74652 4.95592 4.99228 5.01373 5.05491 5.09604 5.19980 5.31605 5.42757 5.56873 5.85997 6.02530 6.17132 6.19311 6.25598 6.26720 6.44461 6.54740 6.91041 6.96196 7.11499 7.12801 7.23754 7.45553 7.86225 8.17175 8.27667 8.62573 8.83845 9.37981 9.66979 10.39814 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.031364 B = 0.002012 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.526183 B =13916.607864 C =14705.815976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.487 5.487 4 C 0.452 3.548 5 O -0.442 6.442 6 N -0.490 5.490 7 C 0.075 3.925 8 C -0.070 4.070 9 C -0.095 4.095 10 C -0.101 4.101 11 C 0.542 3.458 12 O -0.535 6.535 13 N -0.614 5.614 14 C -0.060 4.060 15 C -0.031 4.031 16 N -0.261 5.261 17 N -0.142 5.142 18 C -0.323 4.323 19 H 0.117 0.883 20 C 0.046 3.954 21 N -0.769 5.769 22 Si 0.935 3.065 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.264 1.264 26 C -0.082 4.082 27 C -0.044 4.044 28 C 0.046 3.954 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.408 0.592 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.397 0.603 38 H 0.177 0.823 39 H 0.275 0.725 40 H 0.147 0.853 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.293 -0.002 -22.982 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.021 4.021 3 N -0.189 5.189 4 C 0.150 3.850 5 O -0.244 6.244 6 N -0.220 5.220 7 C -0.045 4.045 8 C -0.090 4.090 9 C -0.116 4.116 10 C -0.106 4.106 11 C 0.329 3.671 12 O -0.414 6.414 13 N -0.256 5.256 14 C -0.165 4.165 15 C -0.206 4.206 16 N -0.092 5.092 17 N 0.090 4.910 18 C -0.455 4.455 19 H 0.134 0.866 20 C -0.171 4.171 21 N -0.396 5.396 22 Si 0.758 3.242 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.188 1.188 26 C -0.233 4.233 27 C -0.065 4.065 28 C -0.061 4.061 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.266 0.734 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.232 0.768 38 H 0.193 0.807 39 H 0.085 0.915 40 H 0.164 0.836 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.072 -1.199 -21.974 22.104 hybrid contribution -0.381 0.596 -0.118 0.717 sum -2.452 -0.603 -22.093 22.236 Atomic orbital electron populations 1.22174 0.93930 1.03584 1.03145 1.21887 0.95683 0.79260 1.05246 1.45800 1.54608 1.13527 1.05013 1.20366 0.97908 0.85553 0.81208 1.84775 1.39221 1.81757 1.18611 1.70615 1.23771 1.15932 1.11731 1.18913 1.02748 0.93698 0.89146 1.19877 1.00234 0.97914 0.90982 1.20806 0.99355 0.96381 0.95083 1.19696 1.03303 0.94474 0.93158 1.17802 0.79767 0.84397 0.85098 1.90677 1.47440 1.25186 1.78076 1.42381 1.63451 1.15383 1.04354 1.17248 1.20346 0.97803 0.81146 1.24128 1.06507 0.98649 0.91363 1.78248 1.22183 0.95492 1.13324 1.44551 1.35299 1.07548 1.03581 1.19882 1.42896 1.03048 0.79689 0.86567 1.25648 0.95494 0.95388 1.00581 1.70222 1.31001 1.08260 1.30078 0.85812 0.79178 0.79121 0.80046 1.19647 1.20125 1.18764 1.21274 1.17274 0.99184 0.85576 1.19947 0.98834 1.00004 0.87748 1.18479 1.06503 0.92465 0.88701 0.91356 0.92262 0.90069 0.88445 0.88490 0.73365 0.84544 0.84629 0.76826 0.80668 0.91472 0.83592 0.84345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.24 37.16 0.38 -0.52 16 2 C 0.10 0.65 6.81 -4.04 -0.03 0.63 16 3 N -0.49 -4.81 2.83 -116.00 -0.33 -5.14 16 4 C 0.45 4.71 8.98 -88.91 -0.80 3.91 16 5 O -0.44 -3.16 13.51 -17.32 -0.23 -3.40 16 6 N -0.49 -6.30 11.29 -12.18 -0.14 -6.44 16 7 C 0.07 0.95 7.22 -84.61 -0.61 0.34 16 8 C -0.07 -0.78 10.03 -39.64 -0.40 -1.18 16 9 C -0.10 -1.06 9.46 -39.59 -0.37 -1.44 16 10 C -0.10 -1.40 5.88 -104.92 -0.62 -2.02 16 11 C 0.54 9.63 7.73 -12.49 -0.10 9.54 16 12 O -0.54 -11.39 13.47 5.25 0.07 -11.32 16 13 N -0.61 -10.87 5.41 -10.95 -0.06 -10.93 16 14 C -0.06 -1.37 6.90 -83.86 -0.58 -1.95 16 15 C -0.03 -0.81 10.85 -17.03 -0.18 -0.99 16 16 N -0.26 -7.58 10.42 30.80 0.32 -7.26 16 17 N -0.14 -3.89 3.74 -11.40 -0.04 -3.93 16 18 C -0.32 -8.49 10.24 -14.82 -0.15 -8.65 16 19 H 0.12 2.73 7.84 -52.49 -0.41 2.31 16 20 C 0.05 1.19 5.50 -17.51 -0.10 1.09 16 21 N -0.77 -21.43 11.84 55.50 0.66 -20.77 16 22 Si 0.93 18.84 29.56 -169.99 -5.02 13.82 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 25 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 26 C -0.08 -1.91 11.49 -16.38 -0.19 -2.10 16 27 C -0.04 -0.57 9.58 -39.10 -0.37 -0.94 16 28 C 0.05 0.56 6.87 -83.88 -0.58 -0.02 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.41 0.74 9.06 45.56 0.41 1.15 16 35 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.14 1.17 6.36 -52.49 -0.33 0.83 16 37 H 0.40 5.36 6.82 -40.82 -0.28 5.09 16 38 H 0.18 4.55 5.91 -52.48 -0.31 4.24 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.15 2.80 8.06 -52.48 -0.42 2.38 16 41 H 0.14 1.78 7.64 -52.49 -0.40 1.38 16 LS Contribution 359.90 15.07 5.42 5.42 Total: -1.00 -36.72 359.90 -7.46 -44.18 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -3.42 Total: 10.07 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -4.69 Total: -4.30 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.41 Total: -54.48 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.16 Total: -14.72 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.72 -7.46 -44.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583623292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.173 kcal (2) G-P(sol) polarization free energy of solvation -36.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds