Wall clock time and date at job start Sat Apr 11 2020 06:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47009 * 2 1 4 4 C 1.36257 * 126.39832 * 269.97061 * 3 2 1 5 5 O 1.35207 * 125.01349 * 0.06560 * 4 3 2 6 6 N 1.30920 * 109.97633 * 180.02562 * 4 3 2 7 7 C 1.35561 * 109.70990 * 359.97438 * 6 4 3 8 8 C 1.40016 * 133.26676 * 179.97438 * 7 6 4 9 9 C 1.36210 * 120.09195 * 180.02562 * 8 7 6 10 10 C 1.40160 * 120.48800 * 359.97438 * 9 8 7 11 11 C 1.47489 * 119.94650 * 179.72970 * 10 9 8 12 12 O 1.21630 * 120.00117 * 179.97438 * 11 10 9 13 13 N 1.34775 * 120.00239 * 359.97438 * 11 10 9 14 14 C 1.40531 * 120.00271 * 180.02562 * 13 11 10 15 15 C 1.40663 * 126.08759 * 359.68667 * 14 13 11 16 16 N 1.30903 * 108.38993 * 179.87786 * 15 14 13 17 17 N 1.40061 * 108.41366 * 0.38689 * 16 15 14 18 18 C 1.37315 * 126.07157 * 179.71688 * 17 16 15 19 19 H 1.08001 * 119.99835 * 174.17117 * 18 17 16 20 20 C 1.38992 * 119.99838 * 354.17852 * 18 17 16 21 21 N 1.31287 * 119.99892 * 5.94170 * 20 18 17 22 22 Si 1.86795 * 119.99961 * 185.93834 * 20 18 17 23 23 H 1.48495 * 109.47123 * 94.97996 * 22 20 18 24 24 H 1.48500 * 109.47123 * 214.98034 * 22 20 18 25 25 H 1.48504 * 109.47033 * 334.98216 * 22 20 18 26 26 C 1.35698 * 126.08722 * 179.97438 * 14 13 11 27 27 C 1.39538 * 120.10583 * 359.97438 * 10 9 8 28 28 C 1.38220 * 119.58671 * 0.02562 * 27 10 9 29 29 H 1.08997 * 109.47052 * 300.00181 * 1 2 3 30 30 H 1.08997 * 109.46753 * 60.00031 * 1 2 3 31 31 H 1.08998 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47672 * 240.00180 * 2 1 3 33 33 H 1.08995 * 109.47476 * 119.99795 * 2 1 3 34 34 H 0.96701 * 114.00427 * 89.98770 * 5 4 3 35 35 H 1.08000 * 119.95465 * 0.03028 * 8 7 6 36 36 H 1.07993 * 119.75460 * 179.97438 * 9 8 7 37 37 H 0.96998 * 119.99999 * 0.02562 * 13 11 10 38 38 H 1.08004 * 125.79960 * 0.02562 * 15 14 13 39 39 H 0.97005 * 120.00223 * 180.02562 * 21 20 18 40 40 H 1.08009 * 126.24608 * 359.94559 * 26 14 13 41 41 H 1.07996 * 120.20527 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2883 2.1433 -1.0967 5 8 2.1441 1.7372 -2.3783 6 7 2.7072 3.3272 -0.7266 7 6 2.7323 3.4008 0.6268 8 6 3.0903 4.4122 1.5264 9 6 3.0117 4.1919 2.8682 10 6 2.5730 2.9555 3.3614 11 6 2.4982 2.7279 4.8167 12 8 2.1171 1.6555 5.2458 13 7 2.8521 3.7082 5.6712 14 6 2.7813 3.4912 7.0578 15 6 2.3561 2.3092 7.6908 16 7 2.4301 2.4847 8.9859 17 7 2.8950 3.7830 9.2306 18 6 3.1017 4.3486 10.4647 19 1 3.5525 5.3270 10.5416 20 6 2.7308 3.6619 11.6148 21 7 2.2916 2.4276 11.5295 22 14 2.8574 4.4951 13.2818 23 1 1.5442 5.0891 13.6393 24 1 3.2434 3.4933 14.3079 25 1 3.8854 5.5653 13.2235 26 6 3.1060 4.3864 8.0246 27 6 2.2116 1.9378 2.4777 28 6 2.2899 2.1573 1.1153 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.2695 1.9141 -2.7509 35 1 3.4291 5.3684 1.1558 36 1 3.2896 4.9758 3.5572 37 1 3.1556 4.5636 5.3291 38 1 2.0270 1.4091 7.1929 39 1 2.0324 1.9484 12.3321 40 1 3.4656 5.3928 7.8682 41 1 1.8737 0.9844 2.8560 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583623292.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:14 Heat of formation + Delta-G solvation = 67.611036 kcal Electronic energy + Delta-G solvation = -27843.398302 eV Core-core repulsion = 23725.877449 eV Total energy + Delta-G solvation = -4117.520853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.34215 -41.73124 -40.47676 -38.98312 -37.40813 -36.06728 -35.95580 -34.97018 -32.33979 -32.25239 -30.82621 -30.49243 -29.19952 -26.83457 -25.04287 -24.77136 -23.75773 -22.86283 -22.00229 -21.75468 -21.17996 -19.64065 -19.36501 -18.64869 -18.38985 -17.71860 -17.36660 -16.91604 -16.60833 -16.14988 -15.92796 -15.62391 -15.39335 -15.17021 -15.08505 -15.00448 -14.77464 -14.72745 -14.17958 -13.98267 -13.47595 -13.32478 -13.26115 -13.01093 -12.95400 -12.77932 -12.45933 -12.40323 -12.30315 -12.05235 -11.83520 -11.55182 -11.11154 -11.01307 -10.86023 -10.75283 -10.07873 -9.49757 -9.25150 -8.49165 -8.45365 -6.21826 -0.54146 0.30494 1.05815 1.21992 1.35769 1.41681 1.59737 1.72361 1.97638 2.04897 2.28308 2.49225 2.58633 2.89689 2.92497 3.10760 3.28519 3.61493 3.74906 3.91864 4.00457 4.14084 4.15547 4.26267 4.28376 4.44163 4.49051 4.65484 4.71990 4.79256 5.01338 5.03983 5.07524 5.12902 5.19354 5.27768 5.31664 5.35658 5.46462 5.60928 5.66274 5.98461 6.33382 6.52445 6.60987 6.73625 6.75796 7.35777 7.49226 7.70264 8.54156 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.031364 B = 0.002012 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.526183 B =13916.607864 C =14705.815976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.095 3.905 3 N -0.484 5.484 4 C 0.467 3.533 5 O -0.439 6.439 6 N -0.523 5.523 7 C 0.066 3.934 8 C -0.070 4.070 9 C -0.083 4.083 10 C -0.119 4.119 11 C 0.545 3.455 12 O -0.576 6.576 13 N -0.605 5.605 14 C -0.045 4.045 15 C -0.058 4.058 16 N -0.311 5.311 17 N -0.169 5.169 18 C -0.353 4.353 19 H 0.142 0.858 20 C -0.008 4.008 21 N -0.825 5.825 22 Si 1.019 2.981 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.242 1.242 26 C -0.076 4.076 27 C -0.043 4.043 28 C 0.032 3.968 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.433 0.567 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.420 0.580 38 H 0.168 0.832 39 H 0.276 0.724 40 H 0.192 0.808 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 2.129 -24.937 25.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.026 4.026 3 N -0.186 5.186 4 C 0.164 3.836 5 O -0.244 6.244 6 N -0.254 5.254 7 C -0.054 4.054 8 C -0.089 4.089 9 C -0.104 4.104 10 C -0.124 4.124 11 C 0.335 3.665 12 O -0.457 6.457 13 N -0.250 5.250 14 C -0.151 4.151 15 C -0.234 4.234 16 N -0.143 5.143 17 N 0.063 4.937 18 C -0.484 4.484 19 H 0.159 0.841 20 C -0.219 4.219 21 N -0.453 5.453 22 Si 0.838 3.162 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.165 1.165 26 C -0.227 4.227 27 C -0.064 4.064 28 C -0.076 4.076 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.138 0.862 33 H 0.112 0.888 34 H 0.296 0.704 35 H 0.179 0.821 36 H 0.182 0.818 37 H 0.259 0.741 38 H 0.185 0.815 39 H 0.086 0.914 40 H 0.208 0.792 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.505 0.950 -24.011 24.077 hybrid contribution -0.590 -0.156 0.120 0.622 sum -2.094 0.794 -23.891 23.995 Atomic orbital electron populations 1.22142 0.92921 1.04613 1.02592 1.22174 0.96490 0.77702 1.06216 1.46010 1.53942 1.14404 1.04230 1.20486 0.95971 0.84974 0.82198 1.84748 1.41370 1.81448 1.16865 1.70619 1.25670 1.17438 1.11700 1.19323 1.02306 0.94196 0.89594 1.20156 0.99613 0.98589 0.90557 1.20990 0.98098 0.95627 0.95713 1.19374 1.06241 0.96319 0.90446 1.18426 0.77985 0.83480 0.86644 1.90659 1.48982 1.26949 1.79145 1.42260 1.63820 1.16737 1.02201 1.17302 1.18047 0.96203 0.83518 1.24185 1.07906 0.99892 0.91395 1.78142 1.23979 0.97479 1.14735 1.44844 1.36485 1.07370 1.05048 1.20624 1.43649 1.04182 0.79934 0.84058 1.26890 0.94307 0.95734 1.04976 1.70403 1.33099 1.10458 1.31339 0.84577 0.79655 0.78132 0.73840 1.19224 1.20281 1.16460 1.22032 1.15582 1.00736 0.84325 1.19895 0.98570 0.99616 0.88366 1.18451 1.07211 0.93164 0.88754 0.93544 0.91100 0.88264 0.86232 0.88790 0.70381 0.82057 0.81832 0.74096 0.81540 0.91443 0.79152 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 10.24 71.98 0.74 -0.76 16 2 C 0.09 1.08 6.81 86.38 0.59 1.67 16 3 N -0.48 -8.88 2.83 -631.93 -1.79 -10.66 16 4 C 0.47 8.76 8.98 179.75 1.61 10.37 16 5 O -0.44 -5.02 13.51 -84.88 -1.15 -6.17 16 6 N -0.52 -12.51 11.29 -306.24 -3.46 -15.97 16 7 C 0.07 1.58 7.22 39.61 0.29 1.86 16 8 C -0.07 -1.38 10.03 22.23 0.22 -1.16 16 9 C -0.08 -1.68 9.46 22.26 0.21 -1.47 16 10 C -0.12 -3.22 5.88 -20.06 -0.12 -3.34 16 11 C 0.55 19.45 7.73 86.68 0.67 20.12 16 12 O -0.58 -25.55 13.47 -4.13 -0.06 -25.61 16 13 N -0.61 -20.83 5.41 -306.80 -1.66 -22.49 16 14 C -0.04 -2.04 6.90 37.75 0.26 -1.78 16 15 C -0.06 -3.20 10.85 85.42 0.93 -2.28 16 16 N -0.31 -18.87 10.42 -56.46 -0.59 -19.46 16 17 N -0.17 -9.34 3.74 -189.99 -0.71 -10.05 16 18 C -0.35 -18.60 10.24 84.02 0.86 -17.74 16 19 H 0.14 6.42 7.84 -2.91 -0.02 6.39 16 20 C -0.01 -0.39 5.50 84.95 0.47 0.07 16 21 N -0.82 -47.81 11.84 21.66 0.26 -47.56 16 22 Si 1.02 38.56 29.56 68.60 2.03 40.59 16 23 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.28 -10.43 7.11 99.48 0.71 -9.72 16 25 H -0.24 -8.20 7.11 99.48 0.71 -7.49 16 26 C -0.08 -3.49 11.49 83.38 0.96 -2.53 16 27 C -0.04 -1.12 9.58 22.58 0.22 -0.91 16 28 C 0.03 0.76 6.87 38.68 0.27 1.03 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 0.85 8.12 -2.39 -0.02 0.83 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.43 0.15 9.06 -74.06 -0.67 -0.52 16 35 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.16 2.23 6.36 -2.91 -0.02 2.21 16 37 H 0.42 10.26 6.82 -92.71 -0.63 9.62 16 38 H 0.17 9.24 5.91 -2.91 -0.02 9.22 16 39 H 0.28 14.69 8.31 -92.70 -0.77 13.92 16 40 H 0.19 6.70 8.06 -2.91 -0.02 6.68 16 41 H 0.13 3.53 7.64 -2.91 -0.02 3.51 16 Total: -1.00 -84.48 359.90 0.87 -83.61 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: -0.18 Total: 30.58 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 8.17 Total: 3.18 kcal Atomic # 7 Polarization: -118.24 SS G_CDS: -7.95 Total: -126.18 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.20 Total: -31.77 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -84.48 0.87 -83.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583623292.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.222 kcal (2) G-P(sol) polarization free energy of solvation -84.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds