Wall clock time and date at job start Sat Apr 11 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46892 * 2 1 4 4 N 1.28709 * 126.03311 * 273.65594 * 3 2 1 5 5 N 1.28518 * 110.64175 * 180.02562 * 4 3 2 6 6 C 1.33323 * 109.43202 * 359.76168 * 5 4 3 7 7 C 1.36997 * 106.37496 * 0.36888 * 6 5 4 8 8 C 1.47236 * 127.18913 * 179.90283 * 7 6 5 9 9 O 1.21625 * 120.00067 * 185.07217 * 8 7 6 10 10 N 1.34771 * 120.00154 * 5.07774 * 8 7 6 11 11 C 1.46493 * 120.00356 * 174.70513 * 10 8 7 12 12 H 1.09000 * 109.47393 * 34.99163 * 11 10 8 13 13 C 1.53000 * 109.47005 * 274.99703 * 11 10 8 14 14 C 1.52996 * 109.47539 * 154.99728 * 11 10 8 15 15 N 1.46504 * 109.47062 * 304.99859 * 14 11 10 16 16 C 1.34776 * 120.00053 * 180.02562 * 15 14 11 17 17 O 1.21276 * 120.00164 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99832 * 180.02562 * 16 15 14 19 19 S 1.81005 * 109.47213 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99976 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00335 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99703 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00190 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99779 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47224 * 60.00048 * 24 22 20 26 26 H 1.48502 * 109.47020 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47284 * 299.99741 * 24 22 20 28 28 H 1.09000 * 109.47211 * 60.00202 * 1 2 3 29 29 H 1.09004 * 109.46466 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46992 * 299.99875 * 1 2 3 31 31 H 1.08996 * 109.46992 * 240.00124 * 2 1 3 32 32 H 1.08998 * 109.46710 * 119.99652 * 2 1 3 33 33 H 1.08001 * 126.80742 * 180.26108 * 6 5 4 34 34 H 0.97005 * 119.99908 * 354.69683 * 10 8 7 35 35 H 1.09004 * 109.47099 * 299.99932 * 13 11 10 36 36 H 1.08994 * 109.47247 * 59.99983 * 13 11 10 37 37 H 1.09002 * 109.47637 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47437 * 64.99821 * 14 11 10 39 39 H 1.09002 * 109.47573 * 184.99862 * 14 11 10 40 40 H 0.96997 * 120.00078 * 359.97438 * 15 14 11 41 41 H 1.09002 * 109.46840 * 299.99186 * 18 16 15 42 42 H 1.08996 * 109.47904 * 59.99488 * 18 16 15 43 43 H 0.96999 * 119.99610 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2081 2.1172 -1.0387 5 7 2.6421 3.2780 -0.6984 6 6 2.7488 3.3400 0.6292 7 6 2.3541 2.1177 1.1058 8 6 2.2968 1.6873 2.5127 9 8 2.0124 0.5367 2.7855 10 7 2.5592 2.5684 3.4981 11 6 2.3896 2.1731 4.8985 12 1 2.6615 1.1241 5.0155 13 6 0.9295 2.3704 5.3109 14 6 3.2908 3.0354 5.7846 15 7 4.6748 2.9391 5.3140 16 6 5.6508 3.6193 5.9474 17 8 5.3834 4.3114 6.9067 18 6 7.0744 3.5206 5.4629 19 16 8.1406 4.5406 6.5113 20 6 9.6982 4.2462 5.7419 21 1 9.7620 3.5929 4.8843 22 6 10.8431 4.8539 6.2381 23 7 10.7653 5.6506 7.2831 24 14 12.4946 4.5413 5.4229 25 1 12.4389 4.9833 4.0063 26 1 13.5513 5.3011 6.1379 27 1 12.8064 3.0904 5.4768 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0821 4.1854 1.2128 34 1 2.8605 3.4644 3.2802 35 1 0.6575 3.4195 5.1940 36 1 0.2875 1.7561 4.6797 37 1 0.8031 2.0759 6.3527 38 1 2.9620 4.0736 5.7362 39 1 3.2319 2.6834 6.8145 40 1 4.8888 2.3853 4.5470 41 1 7.4033 2.4825 5.5107 42 1 7.1332 3.8734 4.4333 43 1 11.5655 6.0756 7.6295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001583684525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:23 Heat of formation + Delta-G solvation = 19.865381 kcal Electronic energy + Delta-G solvation = -26601.481746 eV Core-core repulsion = 22617.334437 eV Total energy + Delta-G solvation = -3984.147309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.73048 -40.36860 -39.17519 -36.83984 -35.81018 -33.92075 -32.54335 -32.45100 -31.27587 -30.83490 -29.45340 -26.19631 -25.50948 -25.30380 -24.30011 -22.90759 -21.37474 -21.00005 -20.44504 -18.71166 -17.86819 -17.42130 -17.00996 -16.73366 -16.35162 -15.97294 -15.52267 -15.30997 -15.12383 -14.82521 -14.71540 -14.36996 -14.11606 -13.60649 -13.48468 -13.26449 -13.05221 -13.01804 -12.81919 -12.64812 -12.46617 -12.39103 -12.13267 -11.87978 -11.46199 -11.39010 -11.07364 -11.05474 -10.79116 -10.69887 -10.58958 -10.00287 -9.86037 -9.71442 -9.50661 -9.10677 -9.04392 -8.28584 -6.53704 -6.24165 -3.95266 0.46660 1.59726 1.89292 2.50766 2.56963 2.94434 2.99319 3.22256 3.25882 3.28701 3.61908 3.81036 3.96454 4.18010 4.22968 4.23744 4.30880 4.48049 4.66116 4.66328 4.79374 4.87298 5.00763 5.06299 5.11100 5.19005 5.23238 5.30257 5.41378 5.45565 5.52161 5.52871 5.65251 5.76246 5.82046 5.88620 5.95646 6.08457 6.43166 6.78735 7.46592 7.54203 7.57324 7.93721 8.32484 8.48745 9.21262 10.83147 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.002307 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.766020 B =12133.965215 C =13605.216474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.100 3.900 3 N -0.251 5.251 4 N -0.056 5.056 5 N -0.272 5.272 6 C 0.006 3.994 7 C -0.075 4.075 8 C 0.601 3.399 9 O -0.533 6.533 10 N -0.709 5.709 11 C 0.133 3.867 12 H 0.102 0.898 13 C -0.162 4.162 14 C 0.112 3.888 15 N -0.742 5.742 16 C 0.533 3.467 17 O -0.514 6.514 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.199 0.801 34 H 0.408 0.592 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.305 -11.077 -11.806 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.020 4.020 3 N -0.048 5.048 4 N -0.037 5.037 5 N -0.134 5.134 6 C -0.155 4.155 7 C -0.210 4.210 8 C 0.386 3.614 9 O -0.409 6.409 10 N -0.361 5.361 11 C 0.029 3.971 12 H 0.120 0.880 13 C -0.220 4.220 14 C -0.012 4.012 15 N -0.397 5.397 16 C 0.319 3.681 17 O -0.388 6.388 18 C -0.305 4.305 19 S 0.168 5.832 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.144 0.856 33 H 0.216 0.784 34 H 0.244 0.756 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.966 -10.586 -11.386 28.567 hybrid contribution 1.675 -0.944 -1.005 2.169 sum -22.291 -11.529 -12.391 27.988 Atomic orbital electron populations 1.22096 0.92587 1.04184 1.03351 1.22492 0.96811 0.75626 1.07060 1.47925 1.39864 1.13593 1.03431 1.78298 1.15343 0.98364 1.11682 1.74961 1.15299 1.10640 1.12479 1.23970 1.02322 0.97022 0.92174 1.21887 1.13633 0.94474 0.90969 1.16653 0.77036 0.85157 0.82602 1.90803 1.48646 1.17753 1.83697 1.45794 1.68208 1.16319 1.05801 1.21369 0.96069 1.00949 0.78680 0.88033 1.22125 0.94507 1.02840 1.02566 1.21627 0.80950 1.00401 0.98255 1.46012 1.06986 1.51510 1.35213 1.20326 0.86593 0.78521 0.82633 1.90715 1.83179 1.38572 1.26336 1.23537 0.94974 1.06340 1.05656 1.85384 0.99858 1.58671 1.39287 1.22818 0.93028 1.34285 1.18364 0.90979 1.24989 0.99108 0.94480 0.94959 1.70003 1.29850 1.28263 1.22143 0.86227 0.81478 0.78514 0.79308 1.19906 1.20787 1.19946 0.91437 0.89369 0.91582 0.87405 0.85621 0.78412 0.75628 0.91688 0.91680 0.90606 0.90624 0.89592 0.76734 0.89227 0.89188 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 10.24 37.16 0.38 -0.44 16 2 C 0.10 0.62 6.77 -4.04 -0.03 0.59 16 3 N -0.25 -2.27 3.39 -57.37 -0.19 -2.46 16 4 N -0.06 -0.62 13.14 60.35 0.79 0.17 16 5 N -0.27 -3.12 12.35 30.47 0.38 -2.74 16 6 C 0.01 0.05 11.54 -17.35 -0.20 -0.15 16 7 C -0.08 -0.65 6.98 -82.34 -0.57 -1.23 16 8 C 0.60 4.92 7.76 -12.61 -0.10 4.82 16 9 O -0.53 -5.44 14.39 5.26 0.08 -5.36 16 10 N -0.71 -4.43 4.51 -54.95 -0.25 -4.68 16 11 C 0.13 0.88 2.78 -67.94 -0.19 0.70 16 12 H 0.10 0.78 7.51 -51.93 -0.39 0.39 16 13 C -0.16 -0.91 9.48 37.16 0.35 -0.56 16 14 C 0.11 0.98 5.23 -4.04 -0.02 0.96 16 15 N -0.74 -8.30 5.39 -60.29 -0.32 -8.62 16 16 C 0.53 9.04 7.85 -10.99 -0.09 8.95 16 17 O -0.51 -10.80 15.86 5.56 0.09 -10.71 16 18 C -0.15 -2.95 6.16 36.00 0.22 -2.73 16 19 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 20 C -0.54 -15.05 9.50 30.94 0.29 -14.75 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 24 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.13 0.83 6.17 -51.93 -0.32 0.51 16 33 H 0.20 1.00 7.56 -52.49 -0.40 0.60 16 34 H 0.41 1.98 7.64 -40.82 -0.31 1.67 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.40 3.68 8.14 -40.82 -0.33 3.35 16 41 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 42 H 0.09 1.58 8.14 -51.92 -0.42 1.15 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -36.76 386.16 -6.11 -42.87 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -5.95 Total: 0.22 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.04 Total: -1.84 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 1.14 Total: -43.44 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.16 Total: -16.07 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.76 -6.11 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583684525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.735 kcal (2) G-P(sol) polarization free energy of solvation -36.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds