Wall clock time and date at job start Sat Apr 11 2020 06:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.46892 * 2 1 4 4 N 1.28709 * 126.03311 * 273.65594 * 3 2 1 5 5 N 1.28518 * 110.64175 * 180.02562 * 4 3 2 6 6 C 1.33323 * 109.43202 * 359.76168 * 5 4 3 7 7 C 1.36997 * 106.37496 * 0.36888 * 6 5 4 8 8 C 1.47236 * 127.18913 * 179.90283 * 7 6 5 9 9 O 1.21625 * 120.00067 * 185.07217 * 8 7 6 10 10 N 1.34771 * 120.00154 * 5.07774 * 8 7 6 11 11 C 1.46493 * 120.00356 * 174.70513 * 10 8 7 12 12 H 1.09000 * 109.47393 * 34.99163 * 11 10 8 13 13 C 1.53000 * 109.47005 * 274.99703 * 11 10 8 14 14 C 1.52996 * 109.47539 * 154.99728 * 11 10 8 15 15 N 1.46504 * 109.47062 * 304.99859 * 14 11 10 16 16 C 1.34776 * 120.00053 * 180.02562 * 15 14 11 17 17 O 1.21276 * 120.00164 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99832 * 180.02562 * 16 15 14 19 19 S 1.81005 * 109.47213 * 179.97438 * 18 16 15 20 20 C 1.76197 * 99.99976 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00335 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99703 * 179.97438 * 20 19 18 23 23 N 1.31631 * 120.00190 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99779 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47224 * 60.00048 * 24 22 20 26 26 H 1.48502 * 109.47020 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47284 * 299.99741 * 24 22 20 28 28 H 1.09000 * 109.47211 * 60.00202 * 1 2 3 29 29 H 1.09004 * 109.46466 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46992 * 299.99875 * 1 2 3 31 31 H 1.08996 * 109.46992 * 240.00124 * 2 1 3 32 32 H 1.08998 * 109.46710 * 119.99652 * 2 1 3 33 33 H 1.08001 * 126.80742 * 180.26108 * 6 5 4 34 34 H 0.97005 * 119.99908 * 354.69683 * 10 8 7 35 35 H 1.09004 * 109.47099 * 299.99932 * 13 11 10 36 36 H 1.08994 * 109.47247 * 59.99983 * 13 11 10 37 37 H 1.09002 * 109.47637 * 179.97438 * 13 11 10 38 38 H 1.09002 * 109.47437 * 64.99821 * 14 11 10 39 39 H 1.09002 * 109.47573 * 184.99862 * 14 11 10 40 40 H 0.96997 * 120.00078 * 359.97438 * 15 14 11 41 41 H 1.09002 * 109.46840 * 299.99186 * 18 16 15 42 42 H 1.08996 * 109.47904 * 59.99488 * 18 16 15 43 43 H 0.96999 * 119.99610 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2081 2.1172 -1.0387 5 7 2.6421 3.2780 -0.6984 6 6 2.7488 3.3400 0.6292 7 6 2.3541 2.1177 1.1058 8 6 2.2968 1.6873 2.5127 9 8 2.0124 0.5367 2.7855 10 7 2.5592 2.5684 3.4981 11 6 2.3896 2.1731 4.8985 12 1 2.6615 1.1241 5.0155 13 6 0.9295 2.3704 5.3109 14 6 3.2908 3.0354 5.7846 15 7 4.6748 2.9391 5.3140 16 6 5.6508 3.6193 5.9474 17 8 5.3834 4.3114 6.9067 18 6 7.0744 3.5206 5.4629 19 16 8.1406 4.5406 6.5113 20 6 9.6982 4.2462 5.7419 21 1 9.7620 3.5929 4.8843 22 6 10.8431 4.8539 6.2381 23 7 10.7653 5.6506 7.2831 24 14 12.4946 4.5413 5.4229 25 1 12.4389 4.9833 4.0063 26 1 13.5513 5.3011 6.1379 27 1 12.8064 3.0904 5.4768 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.0821 4.1854 1.2128 34 1 2.8605 3.4644 3.2802 35 1 0.6575 3.4195 5.1940 36 1 0.2875 1.7561 4.6797 37 1 0.8031 2.0759 6.3527 38 1 2.9620 4.0736 5.7362 39 1 3.2319 2.6834 6.8145 40 1 4.8888 2.3853 4.5470 41 1 7.4033 2.4825 5.5107 42 1 7.1332 3.8734 4.4333 43 1 11.5655 6.0756 7.6295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001583684525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:22 Heat of formation + Delta-G solvation = -8.722081 kcal Electronic energy + Delta-G solvation = -26602.721392 eV Core-core repulsion = 22617.334437 eV Total energy + Delta-G solvation = -3985.386954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.42002 -41.13200 -40.35736 -37.63000 -36.43668 -34.90327 -34.57033 -33.29831 -31.84051 -31.60757 -30.69638 -27.72631 -26.85977 -25.99940 -24.92121 -23.56112 -22.03146 -21.71184 -21.63317 -19.87824 -19.24971 -18.09077 -17.83714 -17.62439 -17.49843 -16.95837 -16.86569 -16.44452 -16.05130 -15.90792 -15.83286 -15.35110 -14.94526 -14.80944 -14.53442 -14.22223 -13.98313 -13.84371 -13.71055 -13.26598 -13.21263 -13.19793 -13.15875 -12.96242 -12.86410 -12.66363 -12.60693 -12.07548 -12.00717 -11.73137 -11.37249 -11.26776 -11.12291 -10.97263 -10.68837 -10.30070 -10.26356 -10.13739 -8.64405 -8.33868 -6.11018 -0.19580 1.00430 1.17964 1.27943 1.43787 1.47280 1.56901 1.62917 1.90212 1.93488 2.26185 2.31047 3.00266 3.21897 3.33071 3.37268 3.56438 3.64208 3.86964 3.91532 3.97579 4.08140 4.23144 4.24342 4.31876 4.33307 4.53930 4.59334 4.62795 4.70528 4.79387 4.79966 4.94496 4.96655 5.06698 5.25545 5.31071 5.33986 5.41883 5.42829 6.20400 6.22010 6.45301 6.86612 7.07852 7.22523 7.23291 8.74815 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.002307 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.766020 B =12133.965215 C =13605.216474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.093 3.907 3 N -0.248 5.248 4 N -0.079 5.079 5 N -0.305 5.305 6 C 0.010 3.990 7 C -0.080 4.080 8 C 0.607 3.393 9 O -0.553 6.553 10 N -0.698 5.698 11 C 0.146 3.854 12 H 0.097 0.903 13 C -0.158 4.158 14 C 0.113 3.887 15 N -0.714 5.714 16 C 0.538 3.462 17 O -0.560 6.560 18 C -0.133 4.133 19 S -0.147 6.147 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.995 3.005 25 H -0.263 1.263 26 H -0.279 1.279 27 H -0.263 1.263 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.053 0.947 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.229 0.771 34 H 0.417 0.583 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.412 0.588 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.775 -12.343 -13.008 29.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.046 5.046 4 N -0.060 5.060 5 N -0.167 5.167 6 C -0.152 4.152 7 C -0.215 4.215 8 C 0.391 3.609 9 O -0.431 6.431 10 N -0.351 5.351 11 C 0.042 3.958 12 H 0.115 0.885 13 C -0.216 4.216 14 C -0.010 4.010 15 N -0.369 5.369 16 C 0.324 3.676 17 O -0.438 6.438 18 C -0.284 4.284 19 S 0.080 5.920 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.546 5.546 24 Si 0.817 3.183 25 H -0.187 1.187 26 H -0.204 1.204 27 H -0.188 1.188 28 H 0.081 0.919 29 H 0.129 0.871 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.245 0.755 34 H 0.255 0.745 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.249 0.751 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.472 -11.877 -12.637 29.994 hybrid contribution 1.673 -0.630 -0.638 1.898 sum -22.799 -12.507 -13.275 29.197 Atomic orbital electron populations 1.22064 0.91622 1.05378 1.02445 1.22745 0.97580 0.74537 1.07727 1.48212 1.38980 1.14199 1.03220 1.78248 1.16446 0.98767 1.12508 1.74919 1.16490 1.11173 1.14070 1.24500 1.01388 0.97842 0.91440 1.22054 1.13687 0.94597 0.91135 1.16559 0.76809 0.84951 0.82542 1.90801 1.49734 1.18650 1.83870 1.45707 1.67520 1.16478 1.05348 1.21243 0.96264 1.00079 0.78243 0.88451 1.22093 0.93212 1.03316 1.02994 1.21785 0.79317 1.01284 0.98653 1.45719 1.07045 1.49639 1.34455 1.19927 0.86587 0.78769 0.82346 1.90709 1.83629 1.40954 1.28468 1.23393 0.94907 1.05356 1.04765 1.85521 1.02129 1.61565 1.42736 1.23166 0.93546 1.34290 1.18503 0.90073 1.26083 1.03452 0.94031 0.95488 1.70166 1.31004 1.29550 1.23897 0.85053 0.76031 0.78799 0.78434 1.18728 1.20419 1.18812 0.91888 0.87142 0.92794 0.85799 0.85848 0.75468 0.74536 0.90868 0.92208 0.89714 0.90047 0.89742 0.75130 0.87644 0.87148 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 10.24 71.98 0.74 -0.64 16 2 C 0.09 1.04 6.77 86.38 0.58 1.63 16 3 N -0.25 -4.25 3.39 -335.42 -1.14 -5.39 16 4 N -0.08 -1.72 13.14 37.02 0.49 -1.24 16 5 N -0.31 -6.78 12.35 -57.50 -0.71 -7.49 16 6 C 0.01 0.15 11.54 84.17 0.97 1.12 16 7 C -0.08 -1.26 6.98 40.41 0.28 -0.98 16 8 C 0.61 8.70 7.76 86.61 0.67 9.38 16 9 O -0.55 -10.30 14.39 -4.11 -0.06 -10.36 16 10 N -0.70 -6.90 4.51 -446.01 -2.01 -8.91 16 11 C 0.15 1.56 2.78 44.99 0.12 1.68 16 12 H 0.10 1.23 7.51 -2.39 -0.02 1.21 16 13 C -0.16 -1.38 9.48 71.98 0.68 -0.70 16 14 C 0.11 1.71 5.23 86.38 0.45 2.16 16 15 N -0.71 -14.20 5.39 -463.06 -2.49 -16.70 16 16 C 0.54 17.51 7.85 87.66 0.69 18.20 16 17 O -0.56 -23.42 15.86 -3.02 -0.05 -23.47 16 18 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 19 S -0.15 -7.86 20.57 -56.49 -1.16 -9.03 16 20 C -0.55 -30.65 9.50 67.95 0.65 -30.01 16 21 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 22 C 0.01 0.81 5.49 84.86 0.47 1.28 16 23 N -0.91 -55.14 13.22 21.65 0.29 -54.85 16 24 Si 0.99 43.14 29.55 68.60 2.03 45.17 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.12 1.48 6.17 -2.39 -0.01 1.47 16 33 H 0.23 1.71 7.56 -2.91 -0.02 1.69 16 34 H 0.42 2.76 7.64 -92.70 -0.71 2.05 16 35 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.41 6.28 8.14 -92.71 -0.75 5.52 16 41 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 42 H 0.11 3.63 8.14 -2.40 -0.02 3.61 16 43 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -81.79 386.16 1.52 -80.27 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -0.40 Total: 13.35 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 6.75 Total: -1.35 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -5.58 Total: -94.58 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.11 Total: -33.83 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.03 kcal Total: -81.79 1.52 -80.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001583684525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.546 kcal (2) G-P(sol) polarization free energy of solvation -81.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds