Wall clock time and date at job start Sat Apr 11 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00081 * 2 1 4 4 C 1.50706 * 109.46951 * 66.05173 * 3 2 1 5 5 H 1.07999 * 119.99981 * 359.97438 * 4 3 2 6 6 C 1.37869 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00079 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00363 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46704 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47427 * 119.99473 * 8 6 4 11 11 H 1.48499 * 109.47415 * 239.99856 * 8 6 4 12 12 C 1.46903 * 110.99914 * 236.05421 * 2 1 3 13 13 C 1.50707 * 109.46629 * 287.96465 * 12 2 1 14 14 C 1.38341 * 119.87700 * 102.30756 * 13 12 2 15 15 C 1.38016 * 120.11354 * 180.02562 * 14 13 12 16 16 C 1.39318 * 119.88068 * 359.97438 * 15 14 13 17 17 C 1.48463 * 120.11552 * 179.72590 * 16 15 14 18 18 N 1.34048 * 126.67130 * 179.68595 * 17 16 15 19 19 N 1.28990 * 107.26566 * 179.89509 * 18 17 16 20 20 N 1.28726 * 108.94105 * 0.37609 * 19 18 17 21 21 H 0.97003 * 125.33987 * 179.78211 * 20 19 18 22 22 N 1.28871 * 109.32384 * 359.76354 * 20 19 18 23 23 C 1.39283 * 119.76583 * 0.02562 * 16 15 14 24 24 C 1.38046 * 119.88262 * 0.02562 * 23 16 15 25 25 C 1.50696 * 119.94162 * 179.97438 * 24 23 16 26 26 F 1.39903 * 109.47345 * 0.49709 * 25 24 23 27 27 F 1.39896 * 109.47474 * 120.49871 * 25 24 23 28 28 F 1.39902 * 109.47147 * 240.49813 * 25 24 23 29 29 H 1.08999 * 109.47567 * 189.55110 * 1 2 3 30 30 H 1.09007 * 109.46888 * 309.54997 * 1 2 3 31 31 H 1.09001 * 109.47688 * 69.54800 * 1 2 3 32 32 H 1.08997 * 109.47163 * 186.04868 * 3 2 1 33 33 H 1.09003 * 109.47452 * 306.05283 * 3 2 1 34 34 H 0.96997 * 119.99907 * 180.02562 * 7 6 4 35 35 H 1.08993 * 109.47368 * 167.97222 * 12 2 1 36 36 H 1.09000 * 109.47445 * 47.96306 * 12 2 1 37 37 H 1.08002 * 119.94531 * 0.02562 * 14 13 12 38 38 H 1.07999 * 120.05820 * 180.02562 * 15 14 13 39 39 H 1.08007 * 120.05561 * 179.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2986 5 1 1.0740 1.5114 2.0486 6 6 2.0268 3.3493 1.5286 7 7 2.7119 4.0018 0.6151 8 14 1.5820 4.1871 3.1379 9 1 0.8139 3.2447 3.9907 10 1 2.8234 4.5946 3.8436 11 1 0.7544 5.3881 2.8586 12 6 1.9954 -0.7658 -1.1377 13 6 1.7662 -2.2366 -0.9022 14 6 0.7315 -2.8856 -1.5519 15 6 0.5169 -4.2323 -1.3394 16 6 1.3448 -4.9382 -0.4693 17 6 1.1149 -6.3857 -0.2322 18 7 1.8297 -7.1893 0.5679 19 7 1.3056 -8.3657 0.4960 20 7 0.3070 -8.3294 -0.3156 21 1 -0.2557 -9.0848 -0.5471 22 7 0.1718 -7.1318 -0.7720 23 6 2.3850 -4.2799 0.1823 24 6 2.5902 -2.9324 -0.0366 25 6 3.7149 -2.2187 0.6680 26 9 4.4108 -3.1261 1.4740 27 9 4.5872 -1.6727 -0.2797 28 9 3.1910 -1.1945 1.4641 29 1 -0.3634 -1.0134 0.1705 30 1 -0.3633 0.6544 0.7925 31 1 -0.3634 0.3591 -0.9629 32 1 3.0797 1.3444 -0.1083 33 1 1.5610 1.9274 -0.8308 34 1 2.9865 4.9179 0.7771 35 1 3.0639 -0.5765 -1.2399 36 1 1.4832 -0.4598 -2.0499 37 1 0.0906 -2.3375 -2.2266 38 1 -0.2908 -4.7381 -1.8475 39 1 3.0294 -4.8225 0.8582 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591061717.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:33 Heat of formation + Delta-G solvation = 15.036616 kcal Electronic energy + Delta-G solvation = -29935.889837 eV Core-core repulsion = 25274.232446 eV Total energy + Delta-G solvation = -4661.657392 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.116 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.63839 -47.27010 -46.85357 -44.72982 -39.77518 -36.61723 -34.68477 -33.98592 -32.58360 -31.95223 -31.18150 -27.58938 -26.92396 -25.86963 -24.78765 -24.62911 -23.05136 -22.22152 -21.20785 -20.25296 -19.56045 -18.05172 -17.90219 -17.78426 -17.41354 -16.44878 -15.89473 -15.46395 -15.18345 -14.92922 -14.40428 -14.35550 -14.14881 -13.88918 -13.81318 -13.57289 -13.51075 -13.11984 -13.07154 -13.03640 -12.89783 -12.61123 -12.32676 -11.95287 -11.66125 -11.65323 -11.51962 -11.39284 -11.29681 -11.12410 -10.91100 -10.79087 -10.60255 -10.45174 -9.86144 -9.31675 -9.21081 -8.76737 -8.41486 -7.30888 -6.00249 -4.00673 0.42898 0.88558 0.98909 1.93816 2.06426 3.03626 3.33568 3.39130 3.41197 3.43151 3.46668 3.89304 4.15149 4.43058 4.45668 4.70176 4.72607 4.83640 4.92649 5.06950 5.15533 5.19295 5.30539 5.36364 5.44881 5.62974 5.74310 5.96843 6.01528 6.08342 6.11440 6.14663 6.24477 6.36888 6.54406 6.73056 7.25382 7.30570 7.79841 7.86154 8.05755 8.16106 8.51921 9.06638 9.63136 11.10787 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.003019 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.354696 B = 9272.975583 C = 9675.419420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.526 5.526 3 C 0.196 3.804 4 C -0.501 4.501 5 H 0.065 0.935 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.062 3.938 13 C 0.012 3.988 14 C -0.121 4.121 15 C -0.050 4.050 16 C -0.036 4.036 17 C 0.228 3.772 18 N -0.267 5.267 19 N -0.049 5.049 20 N -0.229 5.229 21 H 0.475 0.525 22 N -0.295 5.295 23 C -0.031 4.031 24 C -0.164 4.164 25 C 0.506 3.494 26 F -0.188 7.188 27 F -0.180 7.180 28 F -0.134 7.134 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.012 0.988 32 H 0.031 0.969 33 H -0.008 1.008 34 H 0.260 0.740 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 -22.492 -6.045 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.250 5.250 3 C 0.071 3.929 4 C -0.540 4.540 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.066 4.066 13 C 0.010 3.990 14 C -0.140 4.140 15 C -0.070 4.070 16 C -0.040 4.040 17 C -0.052 4.052 18 N -0.140 5.140 19 N -0.044 5.044 20 N -0.074 5.074 21 H 0.329 0.671 22 N -0.147 5.147 23 C -0.052 4.052 24 C -0.166 4.166 25 C 0.451 3.549 26 F -0.169 7.169 27 F -0.161 7.161 28 F -0.115 7.115 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.030 0.970 32 H 0.049 0.951 33 H 0.010 0.990 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.412 -23.100 -5.340 24.116 hybrid contribution -0.766 0.906 -0.159 1.197 sum -5.178 -22.194 -5.499 23.444 Atomic orbital electron populations 1.22295 0.88645 1.00218 1.00262 1.62221 1.07105 1.18035 1.37603 1.19755 0.95468 0.80862 0.96805 1.21150 1.34586 0.96685 1.01560 0.91716 1.24969 0.95365 0.97382 0.96904 1.69966 1.38513 1.11400 1.34007 0.86465 0.78159 0.79264 0.83680 1.19640 1.21028 1.21230 1.21454 1.02493 0.88195 0.94464 1.20044 0.91511 0.96566 0.90833 1.21026 0.97878 0.93875 1.01204 1.21270 0.97142 0.93940 0.94661 1.16971 0.99210 0.85593 1.02209 1.23567 0.90525 0.96442 0.94638 1.76133 1.22916 0.95589 1.19314 1.78929 0.99002 1.17387 1.09077 1.47721 1.22434 1.09313 1.27982 0.67063 1.74914 1.24247 0.92225 1.23300 1.20943 0.95412 0.92488 0.96325 1.19774 0.99502 0.94432 1.02850 1.18144 0.81262 0.77929 0.77555 1.93132 1.81202 1.67654 1.74949 1.93153 1.71633 1.86570 1.64760 1.93474 1.85565 1.58695 1.73732 0.93672 0.90267 0.96981 0.95059 0.99046 0.93024 0.89004 0.93594 0.84272 0.84373 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.21 60.06 0.55 1.19 16 2 N -0.53 -10.78 2.80 -245.82 -0.69 -11.47 16 3 C 0.20 4.95 4.71 -4.97 -0.02 4.92 16 4 C -0.50 -13.85 8.38 -34.44 -0.29 -14.14 16 5 H 0.06 1.79 7.17 -52.49 -0.38 1.41 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 C 0.06 1.05 4.35 -4.97 -0.02 1.03 16 13 C 0.01 0.18 4.71 -104.56 -0.49 -0.32 16 14 C -0.12 -1.38 9.18 -39.62 -0.36 -1.75 16 15 C -0.05 -0.52 9.70 -39.26 -0.38 -0.90 16 16 C -0.04 -0.43 5.88 -104.89 -0.62 -1.04 16 17 C 0.23 2.62 7.94 -156.30 -1.24 1.38 16 18 N -0.27 -3.26 12.23 32.16 0.39 -2.87 16 19 N -0.05 -0.48 13.47 60.35 0.81 0.33 16 20 N -0.23 -1.58 7.90 60.35 0.48 -1.11 16 21 H 0.48 0.88 8.96 -340.37 -3.05 -2.17 16 22 N -0.30 -2.78 12.08 32.17 0.39 -2.39 16 23 C -0.03 -0.41 9.08 -39.26 -0.36 -0.77 16 24 C -0.16 -2.41 5.37 -104.68 -0.56 -2.98 16 25 C 0.51 8.47 2.87 36.00 0.10 8.57 16 26 F -0.19 -2.95 15.97 2.25 0.04 -2.91 16 27 F -0.18 -3.08 15.32 2.25 0.03 -3.05 16 28 F -0.13 -2.71 14.97 2.25 0.03 -2.68 16 29 H 0.04 0.72 7.29 -51.93 -0.38 0.35 16 30 H 0.08 1.61 6.65 -51.93 -0.35 1.26 16 31 H 0.01 0.20 8.00 -51.93 -0.42 -0.21 16 32 H 0.03 0.86 7.86 -51.93 -0.41 0.45 16 33 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.09 1.64 5.67 -51.93 -0.29 1.35 16 36 H 0.05 0.71 7.78 -51.93 -0.40 0.31 16 37 H 0.14 1.31 8.01 -52.49 -0.42 0.89 16 38 H 0.14 1.14 7.88 -52.49 -0.41 0.72 16 39 H 0.15 1.86 6.98 -52.48 -0.37 1.50 16 LS Contribution 344.43 15.07 5.19 5.19 Total: -1.00 -32.44 344.43 -7.82 -40.27 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: -6.43 Total: -6.83 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -3.79 Total: -3.35 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 2.12 Total: -43.32 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 0.10 Total: -8.64 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.44 -7.82 -40.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591061717.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.305 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds