Wall clock time and date at job start Sat Apr 11 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00164 * 2 1 4 4 H 1.48501 * 109.46807 * 239.99168 * 3 2 1 5 5 H 1.48503 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47213 * 119.99371 * 3 2 1 7 7 C 1.37876 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00105 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00361 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47098 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.47158 * 180.02562 * 10 9 7 12 12 C 1.35316 * 125.86875 * 125.01551 * 11 10 9 13 13 C 1.35352 * 106.17299 * 179.97438 * 12 11 10 14 14 C 1.50694 * 126.74848 * 180.26193 * 13 12 11 15 15 O 1.42897 * 109.47343 * 359.71298 * 14 13 12 16 16 C 1.35843 * 117.00102 * 179.97438 * 15 14 13 17 17 C 1.38598 * 120.11596 * 359.97438 * 16 15 14 18 18 C 1.38174 * 120.05550 * 179.97438 * 17 16 15 19 19 C 1.38380 * 120.30382 * 0.02562 * 18 17 16 20 20 C 1.38022 * 120.23101 * 359.97438 * 19 18 17 21 21 C 1.39272 * 119.93376 * 359.73822 * 20 19 18 22 22 C 1.48393 * 120.14589 * 180.27588 * 21 20 19 23 23 N 1.34062 * 126.67807 * 179.97438 * 22 21 20 24 24 N 1.28992 * 107.26716 * 179.83871 * 23 22 21 25 25 N 1.28726 * 108.94791 * 0.43082 * 24 23 22 26 26 H 0.96996 * 125.33674 * 179.74633 * 25 24 23 27 27 N 1.28877 * 109.32522 * 359.72651 * 25 24 23 28 28 N 1.33774 * 106.49549 * 359.97438 * 13 12 11 29 29 N 1.28626 * 108.88702 * 0.02562 * 28 13 12 30 30 H 0.97008 * 119.99534 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46779 * 60.00127 * 9 7 2 32 32 H 1.08997 * 109.47325 * 300.00372 * 9 7 2 33 33 H 1.08999 * 109.47510 * 60.00133 * 10 9 7 34 34 H 1.09006 * 109.47555 * 300.00260 * 10 9 7 35 35 H 1.07994 * 126.90970 * 359.96732 * 12 11 10 36 36 H 1.09007 * 109.47177 * 119.71291 * 14 13 12 37 37 H 1.08995 * 109.47293 * 239.71095 * 14 13 12 38 38 H 1.07996 * 119.97278 * 359.94965 * 17 16 15 39 39 H 1.08007 * 119.84656 * 180.02562 * 18 17 16 40 40 H 1.07992 * 119.88711 * 179.97438 * 19 18 17 41 41 H 1.07994 * 120.02921 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 -0.0001 12 6 1.6614 -5.9318 -0.8984 13 6 0.7978 -6.9049 -0.5250 14 6 0.5881 -8.2336 -1.2044 15 8 1.4498 -8.3291 -2.3403 16 6 1.3854 -9.4738 -3.0688 17 6 0.5125 -10.4850 -2.6994 18 6 0.4476 -11.6487 -3.4416 19 6 1.2521 -11.8121 -4.5555 20 6 2.1258 -10.8131 -4.9344 21 6 2.1949 -9.6337 -4.1969 22 6 3.1281 -8.5540 -4.6035 23 7 3.3003 -7.3726 -3.9937 24 7 4.2001 -6.7275 -4.6557 25 7 4.5853 -7.4491 -5.6497 26 1 5.2529 -7.1915 -6.3045 27 7 3.9451 -8.5676 -5.6382 28 7 0.1717 -6.4577 0.5693 29 7 0.6175 -5.2853 0.8543 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6239 -2.5567 0.8902 33 1 2.8718 -3.6044 0.8905 34 1 2.8719 -3.6044 -0.8894 35 1 2.3338 -5.9504 -1.7433 36 1 0.8169 -9.0388 -0.5061 37 1 -0.4495 -8.3168 -1.5275 38 1 -0.1173 -10.3634 -1.8305 39 1 -0.2342 -12.4343 -3.1509 40 1 1.1962 -12.7246 -5.1305 41 1 2.7519 -10.9439 -5.8046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677017.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:42 Heat of formation + Delta-G solvation = 212.433346 kcal Electronic energy + Delta-G solvation = -27991.765005 eV Core-core repulsion = 23912.816869 eV Total energy + Delta-G solvation = -4078.948136 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.52325 -42.74521 -40.40895 -37.77423 -35.04807 -34.51431 -33.77322 -32.89315 -31.76048 -30.89137 -29.97431 -29.88926 -26.96637 -25.46875 -24.97398 -24.50775 -22.58343 -22.41430 -21.86028 -21.11939 -20.08635 -19.40478 -18.18133 -17.23752 -17.10026 -16.63202 -16.34545 -16.23260 -15.65957 -15.46128 -14.94155 -14.54185 -14.41090 -14.26047 -13.94143 -13.84220 -13.45252 -13.15560 -12.67743 -12.40477 -12.24985 -11.93042 -11.73346 -11.49524 -11.46743 -11.43824 -11.18520 -11.13813 -11.10924 -11.01925 -10.81440 -10.55562 -10.27872 -9.97658 -9.40450 -9.24226 -9.17379 -8.73703 -8.48185 -8.40749 -6.12530 -4.18919 0.46784 1.05790 1.11922 2.11162 2.19442 2.20700 2.78775 2.87358 3.06072 3.27485 3.32618 3.34597 3.47601 3.52868 4.03379 4.36399 4.47380 4.58414 4.74471 4.81152 5.02405 5.07931 5.13515 5.20048 5.23643 5.24728 5.35993 5.42260 5.45991 5.55654 5.79286 5.90952 5.93726 5.99161 6.12273 6.23596 6.24888 6.33111 6.41376 6.51181 7.10520 7.15897 7.46449 7.54974 7.83059 8.08122 8.15151 8.86021 9.02048 9.46129 10.98574 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.002559 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.509578 B =10941.015681 C =12656.821332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.060 0.940 9 C 0.016 3.984 10 C 0.112 3.888 11 N -0.272 5.272 12 C -0.019 4.019 13 C -0.054 4.054 14 C 0.157 3.843 15 O -0.284 6.284 16 C 0.180 3.820 17 C -0.214 4.214 18 C -0.056 4.056 19 C -0.165 4.165 20 C -0.042 4.042 21 C -0.057 4.057 22 C 0.226 3.774 23 N -0.244 5.244 24 N -0.050 5.050 25 N -0.232 5.232 26 H 0.473 0.527 27 N -0.303 5.303 28 N -0.276 5.276 29 N -0.070 5.070 30 H 0.265 0.735 31 H 0.024 0.976 32 H 0.037 0.963 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.195 0.805 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.620 -25.027 -13.047 28.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.079 0.921 9 C -0.022 4.022 10 C -0.007 4.007 11 N -0.065 5.065 12 C -0.172 4.172 13 C -0.192 4.192 14 C 0.080 3.920 15 O -0.194 6.194 16 C 0.131 3.869 17 C -0.233 4.233 18 C -0.075 4.075 19 C -0.184 4.184 20 C -0.062 4.062 21 C -0.061 4.061 22 C -0.054 4.054 23 N -0.117 5.117 24 N -0.046 5.046 25 N -0.077 5.077 26 H 0.327 0.673 27 N -0.156 5.156 28 N -0.144 5.144 29 N -0.050 5.050 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.212 0.788 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.158 0.842 39 H 0.148 0.852 40 H 0.148 0.852 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.109 -23.644 -11.724 27.089 hybrid contribution 1.203 0.480 -1.437 1.935 sum 7.312 -23.163 -13.161 27.627 Atomic orbital electron populations 1.69972 1.06157 1.27194 1.49139 1.24997 0.94881 0.99454 0.94736 0.86540 0.79491 0.82570 0.78728 1.20087 1.21147 1.20016 1.20909 0.93025 0.90104 1.52937 0.92136 1.19396 0.93835 0.89751 0.99251 1.22766 0.95801 0.78424 1.03754 1.47940 1.25765 1.15449 1.17302 1.23511 1.05105 0.89063 0.99509 1.21132 1.01503 0.97917 0.98658 1.20440 0.93539 0.92863 0.85144 1.86205 1.59895 1.34177 1.39105 1.18833 0.92666 0.85734 0.89713 1.21299 1.02900 0.95000 1.04057 1.21138 0.96691 0.96258 0.93414 1.20976 0.98603 0.99879 0.98921 1.20996 0.96777 0.90576 0.97830 1.16509 0.99215 0.92938 0.97429 1.23379 0.97244 0.94328 0.90402 1.76298 1.09878 1.03677 1.21854 1.79041 1.08677 1.20003 0.96855 1.47710 1.29595 1.08619 1.21815 0.67269 1.74852 1.10733 1.07248 1.22738 1.74962 1.22404 1.04009 1.13050 1.78304 1.03922 1.07726 1.15075 0.92569 0.95786 0.94435 0.89190 0.88553 0.78822 0.90137 0.90061 0.84231 0.85162 0.85169 0.84442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -14.40 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.40 5.10 -27.89 -0.14 0.25 16 10 C 0.11 2.25 6.39 -4.04 -0.03 2.22 16 11 N -0.27 -5.46 3.44 -61.26 -0.21 -5.67 16 12 C -0.02 -0.34 10.91 -17.04 -0.19 -0.53 16 13 C -0.05 -0.91 7.22 -82.78 -0.60 -1.50 16 14 C 0.16 1.94 5.36 36.00 0.19 2.13 16 15 O -0.28 -3.63 7.87 -19.25 -0.15 -3.78 16 16 C 0.18 1.96 6.69 -38.88 -0.26 1.70 16 17 C -0.21 -1.79 9.03 -39.47 -0.36 -2.14 16 18 C -0.06 -0.37 10.03 -39.55 -0.40 -0.77 16 19 C -0.17 -1.08 10.03 -39.61 -0.40 -1.47 16 20 C -0.04 -0.34 9.70 -39.28 -0.38 -0.72 16 21 C -0.06 -0.61 5.89 -104.76 -0.62 -1.23 16 22 C 0.23 2.72 7.91 -156.30 -1.24 1.48 16 23 N -0.24 -3.34 11.06 32.15 0.36 -2.99 16 24 N -0.05 -0.60 13.47 60.35 0.81 0.21 16 25 N -0.23 -1.95 7.90 60.35 0.48 -1.47 16 26 H 0.47 1.65 8.96 -340.37 -3.05 -1.40 16 27 N -0.30 -3.05 12.09 32.16 0.39 -2.66 16 28 N -0.28 -5.49 12.41 33.29 0.41 -5.08 16 29 N -0.07 -1.53 12.92 60.35 0.78 -0.75 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 1.05 8.12 -51.93 -0.42 0.63 16 33 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.10 1.73 8.07 -51.93 -0.42 1.31 16 35 H 0.19 3.11 7.93 -52.49 -0.42 2.69 16 36 H 0.08 0.83 7.66 -51.93 -0.40 0.43 16 37 H 0.08 0.88 7.67 -51.93 -0.40 0.48 16 38 H 0.14 0.95 6.30 -52.49 -0.33 0.62 16 39 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 41 H 0.14 0.91 7.88 -52.49 -0.41 0.50 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -34.98 365.15 -7.81 -42.79 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -7.08 Total: -2.86 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -4.81 Total: -13.63 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 3.75 Total: -44.10 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: -0.15 Total: -3.78 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.98 -7.81 -42.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677017.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 255.222 kcal (2) G-P(sol) polarization free energy of solvation -34.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 220.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 212.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds