Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00164 * 2 1 4 4 H 1.48501 * 109.46807 * 239.99168 * 3 2 1 5 5 H 1.48503 * 109.47267 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47213 * 119.99371 * 3 2 1 7 7 C 1.37876 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00105 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00361 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47098 * 179.97438 * 9 7 2 11 11 N 1.46508 * 109.47158 * 180.02562 * 10 9 7 12 12 C 1.35316 * 125.86875 * 125.01551 * 11 10 9 13 13 C 1.35352 * 106.17299 * 179.97438 * 12 11 10 14 14 C 1.50694 * 126.74848 * 180.26193 * 13 12 11 15 15 O 1.42897 * 109.47343 * 359.71298 * 14 13 12 16 16 C 1.35843 * 117.00102 * 179.97438 * 15 14 13 17 17 C 1.38598 * 120.11596 * 359.97438 * 16 15 14 18 18 C 1.38174 * 120.05550 * 179.97438 * 17 16 15 19 19 C 1.38380 * 120.30382 * 0.02562 * 18 17 16 20 20 C 1.38022 * 120.23101 * 359.97438 * 19 18 17 21 21 C 1.39272 * 119.93376 * 359.73822 * 20 19 18 22 22 C 1.48393 * 120.14589 * 180.27588 * 21 20 19 23 23 N 1.34062 * 126.67807 * 179.97438 * 22 21 20 24 24 N 1.28992 * 107.26716 * 179.83871 * 23 22 21 25 25 N 1.28726 * 108.94791 * 0.43082 * 24 23 22 26 26 H 0.96996 * 125.33674 * 179.74633 * 25 24 23 27 27 N 1.28877 * 109.32522 * 359.72651 * 25 24 23 28 28 N 1.33774 * 106.49549 * 359.97438 * 13 12 11 29 29 N 1.28626 * 108.88702 * 0.02562 * 28 13 12 30 30 H 0.97008 * 119.99534 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46779 * 60.00127 * 9 7 2 32 32 H 1.08997 * 109.47325 * 300.00372 * 9 7 2 33 33 H 1.08999 * 109.47510 * 60.00133 * 10 9 7 34 34 H 1.09006 * 109.47555 * 300.00260 * 10 9 7 35 35 H 1.07994 * 126.90970 * 359.96732 * 12 11 10 36 36 H 1.09007 * 109.47177 * 119.71291 * 14 13 12 37 37 H 1.08995 * 109.47293 * 239.71095 * 14 13 12 38 38 H 1.07996 * 119.97278 * 359.94965 * 17 16 15 39 39 H 1.08007 * 119.84656 * 180.02562 * 18 17 16 40 40 H 1.07992 * 119.88711 * 179.97438 * 19 18 17 41 41 H 1.07994 * 120.02921 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6962 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 -0.0001 12 6 1.6614 -5.9318 -0.8984 13 6 0.7978 -6.9049 -0.5250 14 6 0.5881 -8.2336 -1.2044 15 8 1.4498 -8.3291 -2.3403 16 6 1.3854 -9.4738 -3.0688 17 6 0.5125 -10.4850 -2.6994 18 6 0.4476 -11.6487 -3.4416 19 6 1.2521 -11.8121 -4.5555 20 6 2.1258 -10.8131 -4.9344 21 6 2.1949 -9.6337 -4.1969 22 6 3.1281 -8.5540 -4.6035 23 7 3.3003 -7.3726 -3.9937 24 7 4.2001 -6.7275 -4.6557 25 7 4.5853 -7.4491 -5.6497 26 1 5.2529 -7.1915 -6.3045 27 7 3.9451 -8.5676 -5.6382 28 7 0.1717 -6.4577 0.5693 29 7 0.6175 -5.2853 0.8543 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6239 -2.5567 0.8902 33 1 2.8718 -3.6044 0.8905 34 1 2.8719 -3.6044 -0.8894 35 1 2.3338 -5.9504 -1.7433 36 1 0.8169 -9.0388 -0.5061 37 1 -0.4495 -8.3168 -1.5275 38 1 -0.1173 -10.3634 -1.8305 39 1 -0.2342 -12.4343 -3.1509 40 1 1.1962 -12.7246 -5.1305 41 1 2.7519 -10.9439 -5.8046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677017.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = 188.407759 kcal Electronic energy + Delta-G solvation = -27992.806833 eV Core-core repulsion = 23912.816869 eV Total energy + Delta-G solvation = -4079.989963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.32948 -44.24304 -41.12590 -38.50661 -36.76361 -35.31724 -34.84022 -34.53646 -33.01825 -31.80137 -31.53180 -30.71373 -28.11973 -27.31670 -25.73239 -25.29344 -24.28835 -23.48459 -22.63607 -22.35610 -21.54052 -20.19168 -19.00303 -18.82851 -18.04529 -17.82806 -17.56159 -17.25684 -16.74308 -16.71586 -16.42475 -15.78888 -15.35862 -15.28667 -15.13070 -14.84966 -14.57958 -14.34407 -14.00656 -13.63274 -13.48795 -13.13907 -12.98433 -12.72690 -12.67487 -12.45416 -12.38772 -12.29176 -12.25228 -12.13061 -12.00044 -11.88370 -11.85467 -11.70461 -11.48138 -10.89762 -10.62484 -10.13218 -9.78079 -9.10281 -8.26450 -6.40917 -0.20036 0.29129 0.48418 0.69306 1.40475 1.42823 1.44841 1.45233 1.51385 1.51591 1.55710 1.93772 2.39414 2.79235 2.86909 3.08540 3.27293 3.39982 3.83220 3.88253 3.98118 4.09841 4.13284 4.24101 4.30835 4.34417 4.39999 4.49609 4.53854 4.54568 4.57644 4.64550 4.86018 4.99794 5.05240 5.28402 5.31455 5.43605 5.45584 5.56996 5.57728 5.69471 5.75944 5.83740 6.04351 6.38729 6.74532 7.25471 7.29910 7.50226 8.86124 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.002559 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.509578 B =10941.015681 C =12656.821332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.026 3.974 10 C 0.124 3.876 11 N -0.280 5.280 12 C -0.018 4.018 13 C -0.046 4.046 14 C 0.161 3.839 15 O -0.303 6.303 16 C 0.155 3.845 17 C -0.217 4.217 18 C -0.051 4.051 19 C -0.157 4.157 20 C -0.045 4.045 21 C -0.080 4.080 22 C 0.214 3.786 23 N -0.280 5.280 24 N -0.070 5.070 25 N -0.206 5.206 26 H 0.492 0.508 27 N -0.298 5.298 28 N -0.289 5.289 29 N -0.116 5.116 30 H 0.265 0.735 31 H -0.010 1.010 32 H 0.000 1.000 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.209 0.791 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.938 -27.041 -14.444 31.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.098 0.902 9 C -0.012 4.012 10 C 0.005 3.995 11 N -0.073 5.073 12 C -0.170 4.170 13 C -0.185 4.185 14 C 0.084 3.916 15 O -0.214 6.214 16 C 0.106 3.894 17 C -0.236 4.236 18 C -0.070 4.070 19 C -0.175 4.175 20 C -0.065 4.065 21 C -0.084 4.084 22 C -0.065 4.065 23 N -0.152 5.152 24 N -0.065 5.065 25 N -0.056 5.056 26 H 0.350 0.650 27 N -0.151 5.151 28 N -0.156 5.156 29 N -0.095 5.095 30 H 0.074 0.926 31 H 0.008 0.992 32 H 0.019 0.981 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.226 0.774 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.171 0.829 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.449 -25.671 -13.123 29.777 hybrid contribution 0.785 0.914 -1.139 1.658 sum 8.235 -24.757 -14.263 29.734 Atomic orbital electron populations 1.70138 1.08233 1.28207 1.50673 1.26058 0.95705 1.03833 0.94196 0.85351 0.78063 0.77219 0.79524 1.18608 1.21288 1.18761 1.21414 0.94123 0.90727 1.51990 0.90201 1.19131 0.94132 0.92152 0.95822 1.22526 0.94361 0.76872 1.05731 1.47877 1.25844 1.15740 1.17800 1.23858 1.05371 0.88590 0.99226 1.21831 0.99834 0.99389 0.97444 1.20521 0.94513 0.90777 0.85754 1.86154 1.60241 1.35690 1.39338 1.19076 0.94195 0.85924 0.90171 1.21538 1.02372 0.94947 1.04695 1.21549 0.96557 0.96161 0.92724 1.21378 0.97153 1.00243 0.98695 1.21218 0.97292 0.90066 0.97884 1.16809 0.99718 0.93648 0.98262 1.23752 0.97777 0.94395 0.90613 1.76253 1.11006 1.04747 1.23153 1.78959 1.09140 1.20575 0.97822 1.47766 1.28924 1.07741 1.21175 0.65010 1.74822 1.10572 1.07527 1.22226 1.74895 1.22756 1.03642 1.14282 1.78292 1.05531 1.08989 1.16688 0.92600 0.99160 0.98127 0.87777 0.85950 0.77383 0.87849 0.88472 0.82938 0.82081 0.82154 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 2 C 0.00 0.04 5.46 84.65 0.46 0.50 16 3 Si 0.97 43.26 29.54 68.60 2.03 45.28 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.54 -29.79 9.11 25.60 0.23 -29.55 16 8 H 0.08 3.97 7.74 -2.91 -0.02 3.94 16 9 C 0.03 1.36 5.10 29.85 0.15 1.51 16 10 C 0.12 5.06 6.39 86.37 0.55 5.61 16 11 N -0.28 -11.46 3.44 -347.73 -1.20 -12.66 16 12 C -0.02 -0.65 10.91 83.49 0.91 0.27 16 13 C -0.05 -1.54 7.22 41.59 0.30 -1.24 16 14 C 0.16 3.81 5.36 71.23 0.38 4.19 16 15 O -0.30 -7.59 7.87 -91.78 -0.72 -8.31 16 16 C 0.15 3.21 6.69 22.72 0.15 3.36 16 17 C -0.22 -3.12 9.03 22.34 0.20 -2.92 16 18 C -0.05 -0.50 10.03 22.29 0.22 -0.28 16 19 C -0.16 -1.50 10.03 22.25 0.22 -1.27 16 20 C -0.04 -0.63 9.70 22.47 0.22 -0.41 16 21 C -0.08 -1.65 5.89 -19.95 -0.12 -1.76 16 22 C 0.21 5.07 7.91 137.35 1.09 6.16 16 23 N -0.28 -7.68 11.06 -52.21 -0.58 -8.26 16 24 N -0.07 -1.65 13.47 37.02 0.50 -1.15 16 25 N -0.21 -3.28 7.90 37.02 0.29 -2.98 16 26 H 0.49 2.82 8.96 -347.54 -3.12 -0.29 16 27 N -0.30 -5.73 12.09 -52.16 -0.63 -6.36 16 28 N -0.29 -11.65 12.41 -48.60 -0.60 -12.26 16 29 N -0.12 -5.22 12.92 37.02 0.48 -4.75 16 30 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.00 0.02 8.12 -2.39 -0.02 0.00 16 33 H 0.10 3.92 8.14 -2.39 -0.02 3.90 16 34 H 0.12 4.31 8.07 -2.38 -0.02 4.29 16 35 H 0.21 6.70 7.93 -2.91 -0.02 6.67 16 36 H 0.10 1.95 7.66 -2.38 -0.02 1.93 16 37 H 0.10 1.97 7.67 -2.39 -0.02 1.95 16 38 H 0.15 1.69 6.30 -2.91 -0.02 1.67 16 39 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 40 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 41 H 0.15 1.66 7.88 -2.91 -0.02 1.64 16 Total: -1.00 -79.05 365.15 2.82 -76.23 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -2.01 Total: 8.12 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 4.98 Total: -15.84 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -1.45 Total: -105.49 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.72 Total: -8.31 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -79.05 2.82 -76.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677017.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 264.638 kcal (2) G-P(sol) polarization free energy of solvation -79.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds