Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00012 * 2 1 4 4 C 1.53001 * 109.46886 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47293 * 64.99968 * 4 3 2 6 6 C 1.46500 * 119.99881 * 89.99716 * 5 4 3 7 7 C 1.50706 * 109.46949 * 270.00337 * 6 5 4 8 8 H 1.07995 * 120.00167 * 359.72205 * 7 6 5 9 9 C 1.37879 * 119.99394 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00338 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99424 * 180.02562 * 9 7 6 12 12 H 1.48490 * 109.47405 * 60.00219 * 11 9 7 13 13 H 1.48503 * 109.46845 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47399 * 299.99813 * 11 9 7 15 15 C 1.38552 * 120.00079 * 270.00278 * 5 4 3 16 16 C 1.39566 * 120.52600 * 184.99877 * 15 5 4 17 17 C 1.38272 * 118.32552 * 180.02562 * 16 15 5 18 18 Cl 1.73605 * 120.41352 * 180.02562 * 17 16 15 19 19 N 1.32682 * 119.16747 * 359.97438 * 17 16 15 20 20 C 1.31756 * 120.98860 * 0.02562 * 19 17 16 21 21 C 1.50702 * 119.07556 * 180.02562 * 20 19 17 22 22 H 1.09003 * 110.27414 * 164.29490 * 21 20 19 23 23 C 1.54947 * 110.30939 * 286.38862 * 21 20 19 24 24 C 1.55418 * 100.89320 * 155.28847 * 23 21 20 25 25 C 1.54383 * 102.30900 * 325.99167 * 24 23 21 26 26 O 1.43240 * 107.58979 * 21.28166 * 25 24 23 27 27 N 1.31768 * 121.84807 * 359.71194 * 20 19 17 28 28 H 1.08994 * 109.46978 * 59.99901 * 1 2 3 29 29 H 1.09000 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46839 * 300.00164 * 1 2 3 31 31 H 1.09002 * 109.46923 * 60.00613 * 3 2 1 32 32 H 1.08998 * 109.46974 * 299.99626 * 3 2 1 33 33 H 1.09003 * 109.46998 * 305.00380 * 4 3 2 34 34 H 1.08995 * 109.46933 * 184.99907 * 4 3 2 35 35 H 1.09000 * 109.47175 * 150.00363 * 6 5 4 36 36 H 1.09001 * 109.47297 * 29.99871 * 6 5 4 37 37 H 0.96996 * 119.99730 * 179.97438 * 10 9 7 38 38 H 1.08004 * 120.83483 * 359.97438 * 16 15 5 39 39 H 1.08999 * 111.12687 * 273.27724 * 23 21 20 40 40 H 1.08999 * 111.12639 * 37.44339 * 23 21 20 41 41 H 1.09002 * 110.88393 * 207.75327 * 24 23 21 42 42 H 1.09000 * 110.93386 * 84.24780 * 24 23 21 43 43 H 1.09004 * 109.83286 * 261.77194 * 25 24 23 44 44 H 1.09002 * 109.91041 * 140.84305 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9768 0.5639 -1.2509 6 6 4.2884 1.3997 -2.4130 7 6 3.0441 1.5925 -3.2412 8 1 2.1154 1.1342 -2.9352 9 6 3.0929 2.3497 -4.3924 10 7 4.2252 2.9033 -4.7680 11 14 1.5505 2.5893 -5.4186 12 1 0.5071 3.2530 -4.5966 13 1 1.8664 3.4364 -6.5967 14 1 1.0520 1.2683 -5.8789 15 6 4.0992 -0.8136 -1.3355 16 6 4.6169 -1.4100 -2.4862 17 6 4.7185 -2.7885 -2.5219 18 17 5.3552 -3.5868 -3.9258 19 7 4.3241 -3.4934 -1.4692 20 6 3.8397 -2.8991 -0.3977 21 6 3.4051 -3.7417 0.7737 22 1 3.2949 -3.1227 1.6641 23 6 2.0722 -4.4634 0.4521 24 6 2.1600 -5.6834 1.4109 25 6 3.6743 -5.9835 1.4239 26 8 4.3552 -4.7926 1.0116 27 7 3.7301 -1.5883 -0.3193 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8463 0.8901 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9785 2.1764 0.0902 35 1 5.0544 0.9124 -3.0161 36 1 4.6540 2.3695 -2.0755 37 1 4.2595 3.4356 -5.5781 38 1 4.9295 -0.8098 -3.3280 39 1 1.2162 -3.8332 0.6931 40 1 2.0406 -4.7844 -0.5891 41 1 1.6001 -6.5304 1.0142 42 1 1.8080 -5.4208 2.4085 43 1 3.8965 -6.7951 0.7311 44 1 3.9893 -6.2600 2.4302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646174558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = -52.396634 kcal Electronic energy + Delta-G solvation = -28618.844953 eV Core-core repulsion = 24597.227670 eV Total energy + Delta-G solvation = -4021.617283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.04804 -40.16492 -39.06846 -37.89959 -37.52811 -34.92843 -33.90978 -33.24558 -32.86730 -31.14410 -29.64997 -28.80310 -27.08169 -25.70601 -25.03043 -24.27062 -22.91136 -22.50080 -21.55555 -19.05687 -18.72026 -18.56762 -17.49939 -17.13156 -16.96502 -16.64259 -16.60759 -16.41023 -16.02721 -15.85653 -15.71825 -15.45761 -14.89891 -14.57527 -14.41860 -14.11680 -13.74398 -13.40028 -13.35603 -13.32680 -12.96222 -12.76785 -12.66654 -12.63581 -12.51924 -12.39457 -12.20174 -12.13353 -12.08411 -11.73903 -11.69264 -11.52736 -11.36063 -10.65383 -10.61909 -10.43064 -10.36475 -10.19260 -8.82940 -8.18056 -6.35203 -0.07631 0.34103 0.63631 1.37010 1.39752 1.46147 1.98394 2.37246 2.56993 2.86468 3.05138 3.08571 3.26184 3.54827 3.66476 3.89722 4.02399 4.10986 4.22530 4.28079 4.30650 4.35633 4.41948 4.45319 4.56296 4.57712 4.62387 4.67366 4.83213 4.86359 4.89020 4.95112 4.99142 5.05573 5.07616 5.14474 5.22866 5.30417 5.61718 5.79189 6.02544 6.06239 6.32683 6.44266 6.49383 6.76258 7.24770 7.36605 8.83021 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011045 B = 0.004323 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.478208 B = 6474.936830 C = 7851.777165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.049 3.951 4 C 0.129 3.871 5 N -0.569 5.569 6 C 0.262 3.738 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.024 3.976 10 N -0.919 5.919 11 Si 0.949 3.051 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.279 1.279 15 C 0.457 3.543 16 C -0.281 4.281 17 C 0.237 3.763 18 Cl -0.019 7.019 19 N -0.562 5.562 20 C 0.359 3.641 21 C 0.159 3.841 22 H 0.108 0.892 23 C -0.136 4.136 24 C -0.138 4.138 25 C 0.044 3.956 26 O -0.392 6.392 27 N -0.548 5.548 28 H 0.023 0.977 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.037 0.963 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.021 0.979 36 H 0.034 0.966 37 H 0.268 0.732 38 H 0.142 0.858 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.516 -11.203 12.993 18.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.029 4.029 4 C 0.006 3.994 5 N -0.277 5.277 6 C 0.141 3.859 7 C -0.573 4.573 8 H 0.069 0.931 9 C -0.176 4.176 10 N -0.558 5.558 11 Si 0.775 3.225 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.205 1.205 15 C 0.212 3.788 16 C -0.312 4.312 17 C 0.069 3.931 18 Cl 0.009 6.991 19 N -0.285 5.285 20 C 0.088 3.912 21 C 0.100 3.900 22 H 0.125 0.875 23 C -0.175 4.175 24 C -0.176 4.176 25 C -0.032 4.032 26 O -0.311 6.311 27 N -0.273 5.273 28 H 0.041 0.959 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.039 0.961 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.159 0.841 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.087 0.913 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.300 -11.573 13.452 18.520 hybrid contribution -0.556 1.157 -2.188 2.537 sum -5.856 -10.415 11.264 16.421 Atomic orbital electron populations 1.22762 0.81291 1.02768 0.99769 1.88039 1.19633 1.27585 1.95330 1.22978 0.94284 0.85171 1.00427 1.21618 0.92959 0.99118 0.85686 1.46955 1.65976 1.00640 1.14126 1.19144 0.95511 0.89167 0.82063 1.21572 0.96085 1.31455 1.08232 0.93134 1.25565 0.98666 0.95202 0.98178 1.69986 1.26720 1.34027 1.25092 0.85744 0.80287 0.77987 0.78495 1.19346 1.20578 1.20494 1.18395 0.86123 0.86522 0.87809 1.21971 1.12506 0.94373 1.02302 1.21561 0.93479 0.88414 0.89632 1.98372 1.83845 1.80991 1.35866 1.67514 1.18802 1.41210 1.00968 1.23015 0.89141 0.87002 0.92016 1.21495 0.88728 0.88152 0.91648 0.87457 1.23217 0.95885 0.97514 1.00864 1.23121 0.95748 0.97931 1.00771 1.23358 0.92276 0.86867 1.00683 1.88460 1.32501 1.21486 1.88626 1.67720 1.24079 1.05410 1.30132 0.95863 0.89353 0.92490 0.90603 0.94435 0.89211 0.88013 0.96065 0.94790 0.92334 0.84057 0.88315 0.91677 0.88076 0.88240 0.91296 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.05 16 2 O -0.39 -12.98 9.22 -148.98 -1.37 -14.36 16 3 C 0.05 1.57 6.28 71.98 0.45 2.02 16 4 C 0.13 4.27 5.90 86.38 0.51 4.78 16 5 N -0.57 -23.31 2.54 -707.69 -1.79 -25.10 16 6 C 0.26 12.37 5.07 85.63 0.43 12.80 16 7 C -0.53 -27.53 8.81 25.60 0.23 -27.30 16 8 H 0.05 2.69 7.25 -2.91 -0.02 2.67 16 9 C 0.02 1.27 5.46 84.66 0.46 1.74 16 10 N -0.92 -50.45 13.29 21.45 0.28 -50.17 16 11 Si 0.95 42.07 29.54 68.60 2.03 44.10 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 15 C 0.46 19.08 7.06 133.14 0.94 20.02 16 16 C -0.28 -11.98 9.13 22.60 0.21 -11.77 16 17 C 0.24 9.41 7.33 84.57 0.62 10.03 16 18 Cl -0.02 -0.66 29.15 -2.72 -0.08 -0.74 16 19 N -0.56 -21.78 10.12 -179.03 -1.81 -23.60 16 20 C 0.36 13.07 6.68 138.77 0.93 14.00 16 21 C 0.16 4.51 3.85 30.51 0.12 4.63 16 22 H 0.11 2.80 8.13 -2.39 -0.02 2.79 16 23 C -0.14 -3.03 6.57 32.09 0.21 -2.82 16 24 C -0.14 -2.07 7.02 31.90 0.22 -1.85 16 25 C 0.04 0.85 7.80 72.45 0.56 1.41 16 26 O -0.39 -11.39 10.86 -148.98 -1.62 -13.01 16 27 N -0.55 -21.02 8.11 -185.48 -1.50 -22.52 16 28 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.04 1.40 6.96 -2.39 -0.02 1.39 16 33 H 0.09 2.83 7.48 -2.39 -0.02 2.82 16 34 H 0.10 3.00 7.89 -2.39 -0.02 2.98 16 35 H 0.02 1.09 6.05 -2.39 -0.01 1.08 16 36 H 0.03 1.65 7.89 -2.39 -0.02 1.63 16 37 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.14 6.39 6.16 -2.91 -0.02 6.38 16 39 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.06 1.70 8.05 -2.39 -0.02 1.68 16 41 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -62.83 379.55 2.28 -60.55 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.01 Total: 15.11 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 7.14 Total: 29.75 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -4.83 Total: -121.39 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -2.99 Total: -27.37 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -62.83 2.28 -60.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646174558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.151 kcal (2) G-P(sol) polarization free energy of solvation -62.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds