Wall clock time and date at job start Sat Apr 11 2020 06:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36079 * 116.99871 * 2 1 4 4 C 1.38824 * 120.00282 * 90.00056 * 3 2 1 5 5 F 1.35108 * 120.00009 * 0.03753 * 4 3 2 6 6 C 1.38322 * 120.00192 * 180.02562 * 4 3 2 7 7 C 1.38817 * 119.99890 * 0.02562 * 6 4 3 8 8 N 1.40139 * 120.00018 * 179.97438 * 7 6 4 9 9 C 1.34776 * 119.99848 * 31.07255 * 8 7 6 10 10 O 1.21597 * 120.00014 * 4.34355 * 9 8 7 11 11 N 1.34777 * 120.00087 * 184.34337 * 9 8 7 12 12 C 1.46967 * 120.59357 * 354.66011 * 11 9 8 13 13 C 1.53809 * 108.40052 * 124.75419 * 12 11 9 14 14 N 1.46958 * 108.57803 * 49.63767 * 13 12 11 15 15 C 1.36940 * 120.59672 * 124.62324 * 14 13 12 16 16 H 1.07997 * 120.00290 * 204.42308 * 15 14 13 17 17 C 1.38817 * 119.99681 * 24.42485 * 15 14 13 18 18 N 1.31614 * 119.99949 * 218.89510 * 17 15 14 19 19 Si 1.86798 * 119.99906 * 38.89781 * 17 15 14 20 20 H 1.48496 * 109.47121 * 95.43693 * 19 17 15 21 21 H 1.48501 * 109.47043 * 215.43719 * 19 17 15 22 22 H 1.48500 * 109.47241 * 335.43243 * 19 17 15 23 23 C 1.46962 * 118.81433 * 304.64444 * 14 13 12 24 24 C 1.46963 * 120.59797 * 174.93431 * 11 9 8 25 25 C 1.38821 * 120.00145 * 0.23453 * 7 6 4 26 26 C 1.38317 * 119.99941 * 359.48470 * 25 7 6 27 27 F 1.35107 * 120.00344 * 180.27708 * 26 25 7 28 28 H 1.08998 * 109.47667 * 300.00218 * 1 2 3 29 29 H 1.09003 * 109.47064 * 60.00770 * 1 2 3 30 30 H 1.09002 * 109.47151 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99913 * 179.97438 * 6 4 3 32 32 H 0.97003 * 119.99778 * 211.06995 * 8 7 6 33 33 H 1.09003 * 109.60970 * 244.54385 * 12 11 9 34 34 H 1.09004 * 109.60948 * 5.04848 * 12 11 9 35 35 H 1.08994 * 109.74202 * 289.84714 * 13 12 11 36 36 H 1.09004 * 109.67472 * 169.38828 * 13 12 11 37 37 H 0.96999 * 120.00258 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.61208 * 295.48632 * 23 14 13 39 39 H 1.09001 * 109.75613 * 175.05446 * 23 14 13 40 40 H 1.09001 * 109.60673 * 354.95057 * 24 11 9 41 41 H 1.08992 * 109.61013 * 115.28434 * 24 11 9 42 42 H 1.08008 * 120.00044 * 179.74934 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 2.3619 1.8310 1.2022 5 9 2.0560 1.2288 2.3723 6 6 2.9894 3.0637 1.2022 7 6 3.3035 3.6826 0.0000 8 7 3.9387 4.9318 -0.0001 9 6 4.7815 5.2592 0.9994 10 8 5.0522 4.4424 1.8586 11 7 5.3245 6.4918 1.0464 12 6 5.1002 7.4501 -0.0450 13 6 4.5126 8.7393 0.5538 14 7 5.3444 9.1471 1.6946 15 6 5.8968 10.3993 1.7420 16 1 6.7861 10.5753 2.3291 17 6 5.3137 11.4423 1.0356 18 7 6.0717 12.3309 0.4289 19 14 3.4533 11.5846 0.9460 20 1 2.9767 12.5148 2.0008 21 1 3.0604 12.1056 -0.3879 22 1 2.8439 10.2464 1.1538 23 6 5.5732 8.1870 2.7834 24 6 6.1563 6.8998 2.1873 25 6 2.9835 3.0666 -1.2022 26 6 2.3613 1.8313 -1.2023 27 9 2.0549 1.2292 -2.3723 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 3.2342 3.5450 2.1375 32 1 3.7718 5.5607 -0.7195 33 1 6.0469 7.6710 -0.5382 34 1 4.3998 7.0271 -0.7651 35 1 3.4926 8.5567 0.8916 36 1 4.5129 9.5272 -0.1995 37 1 5.6643 13.0596 -0.0651 38 1 4.6287 7.9650 3.2800 39 1 6.2752 8.6072 3.5037 40 1 6.1534 6.1132 2.9418 41 1 7.1770 7.0794 1.8500 42 1 3.2243 3.5500 -2.1376 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666235241.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:59 Heat of formation + Delta-G solvation = -87.453878 kcal Electronic energy + Delta-G solvation = -29828.977447 eV Core-core repulsion = 25254.043288 eV Total energy + Delta-G solvation = -4574.934159 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.16241 -50.12094 -42.07354 -40.52500 -39.24397 -38.26259 -35.89627 -35.44088 -33.51031 -32.19131 -31.58762 -30.49919 -28.82370 -27.67466 -25.51639 -24.85057 -24.47788 -23.88969 -22.44368 -20.97904 -20.12798 -19.47217 -19.04271 -18.63003 -18.14025 -17.59114 -17.40053 -17.03774 -16.92033 -16.46575 -16.39589 -16.21793 -16.08486 -15.90083 -15.82841 -15.55736 -15.37612 -15.22867 -14.76126 -14.42325 -14.15684 -14.12213 -13.95071 -13.48379 -13.39842 -13.18536 -12.76732 -12.69493 -12.50888 -12.29011 -12.11612 -11.90202 -11.43952 -11.40905 -11.31143 -11.15808 -10.66192 -9.98650 -9.95921 -9.33558 -8.89088 -8.22267 -5.34672 -0.39481 -0.24160 1.24999 1.36856 1.50831 1.54943 1.71376 2.16389 2.37836 2.45633 2.55986 2.78942 2.93245 3.15775 3.38493 3.64487 3.79116 3.87804 4.07775 4.12748 4.21219 4.33248 4.35467 4.38987 4.39807 4.56501 4.58437 4.59205 4.67234 4.70241 4.77435 4.88345 4.92638 5.01919 5.02918 5.18530 5.38200 5.47972 5.77394 5.85912 6.12478 6.18759 6.65737 6.90790 7.25496 7.64214 8.05407 8.95139 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.002597 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.758974 B =10779.221977 C =11197.648926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.339 6.339 3 C -0.002 4.002 4 C 0.123 3.877 5 F -0.130 7.130 6 C -0.166 4.166 7 C 0.227 3.773 8 N -0.670 5.670 9 C 0.706 3.294 10 O -0.604 6.604 11 N -0.610 5.610 12 C 0.099 3.901 13 C 0.125 3.875 14 N -0.612 5.612 15 C -0.266 4.266 16 H 0.053 0.947 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.895 3.105 20 H -0.309 1.309 21 H -0.293 1.293 22 H -0.236 1.236 23 C 0.132 3.868 24 C 0.122 3.878 25 C -0.163 4.163 26 C 0.133 3.867 27 F -0.120 7.120 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.147 0.853 32 H 0.428 0.572 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.263 0.737 38 H 0.031 0.969 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.784 -21.343 -5.700 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.255 6.255 3 C -0.048 4.048 4 C 0.102 3.898 5 F -0.108 7.108 6 C -0.188 4.188 7 C 0.129 3.871 8 N -0.320 5.320 9 C 0.409 3.591 10 O -0.484 6.484 11 N -0.345 5.345 12 C -0.026 4.026 13 C -0.001 4.001 14 N -0.336 5.336 15 C -0.394 4.394 16 H 0.070 0.930 17 C -0.208 4.208 18 N -0.565 5.565 19 Si 0.722 3.278 20 H -0.238 1.238 21 H -0.220 1.220 22 H -0.160 1.160 23 C 0.006 3.994 24 C -0.002 4.002 25 C -0.185 4.185 26 C 0.113 3.887 27 F -0.099 7.099 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.138 0.862 31 H 0.165 0.835 32 H 0.270 0.730 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -10.453 -21.887 -5.149 24.795 hybrid contribution -0.965 1.141 -0.009 1.495 sum -11.418 -20.745 -5.159 24.236 Atomic orbital electron populations 1.23366 0.76737 1.05431 1.01485 1.86138 1.22230 1.22994 1.94188 1.18570 1.05613 0.90035 0.90614 1.17468 0.99963 0.91712 0.80613 1.91508 1.90905 1.82881 1.45500 1.21159 1.01768 0.95272 1.00563 1.16801 0.92453 0.85639 0.92157 1.42681 1.45256 1.16448 1.27661 1.15839 0.78990 0.82419 0.81901 1.90911 1.66291 1.49582 1.41621 1.47246 1.52327 1.11330 1.23552 1.22463 1.02365 0.89355 0.88382 1.21827 0.93218 0.95084 0.89980 1.44387 1.59370 1.10962 1.18843 1.18695 1.05555 0.85890 1.29284 0.92960 1.25625 1.00585 0.96424 0.98138 1.70226 1.36922 1.17857 1.31481 0.86653 0.85577 0.79420 0.76145 1.23773 1.21975 1.15972 1.21453 0.98782 0.88971 0.90217 1.21988 0.93360 0.96962 0.87866 1.20888 1.04236 0.94030 0.99313 1.17205 0.99793 0.91573 0.80167 1.91542 1.90807 1.82881 1.44648 0.93007 0.92288 0.86170 0.83511 0.72979 0.90481 0.87156 0.94390 0.91792 0.92801 0.95105 0.90647 0.88722 0.91296 0.79758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.13 113.37 1.26 1.59 16 2 O -0.34 -7.45 10.14 -94.44 -0.96 -8.41 16 3 C 0.00 -0.04 5.74 22.55 0.13 0.09 16 4 C 0.12 2.95 7.30 22.43 0.16 3.11 16 5 F -0.13 -3.36 17.11 44.97 0.77 -2.59 16 6 C -0.17 -4.01 8.64 22.43 0.19 -3.82 16 7 C 0.23 4.52 6.33 38.09 0.24 4.76 16 8 N -0.67 -13.05 5.27 -317.09 -1.67 -14.72 16 9 C 0.71 19.13 8.07 179.05 1.44 20.57 16 10 O -0.60 -20.10 13.26 -4.02 -0.05 -20.15 16 11 N -0.61 -16.90 2.94 -835.14 -2.46 -19.36 16 12 C 0.10 2.53 6.62 86.56 0.57 3.11 16 13 C 0.13 4.39 4.58 86.57 0.40 4.78 16 14 N -0.61 -25.54 2.74 -697.37 -1.91 -27.46 16 15 C -0.27 -13.69 9.85 84.03 0.83 -12.86 16 16 H 0.05 2.97 8.04 -2.91 -0.02 2.94 16 17 C -0.01 -0.50 4.78 84.86 0.41 -0.10 16 18 N -0.92 -53.30 13.97 21.65 0.30 -53.00 16 19 Si 0.89 40.65 26.43 68.60 1.81 42.46 16 20 H -0.31 -14.81 7.11 99.48 0.71 -14.11 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 22 H -0.24 -9.67 5.07 99.48 0.50 -9.17 16 23 C 0.13 4.59 6.67 86.42 0.58 5.17 16 24 C 0.12 3.68 6.58 86.42 0.57 4.25 16 25 C -0.16 -2.51 9.93 22.43 0.22 -2.29 16 26 C 0.13 2.50 7.30 22.43 0.16 2.66 16 27 F -0.12 -2.27 17.11 44.97 0.77 -1.50 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.15 4.14 6.21 -2.91 -0.02 4.12 16 32 H 0.43 5.57 6.26 -92.71 -0.58 4.99 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.11 1.79 5.55 -2.39 -0.01 1.78 16 35 H 0.04 1.31 6.85 -2.39 -0.02 1.29 16 36 H 0.06 2.46 5.47 -2.38 -0.01 2.45 16 37 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 38 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 2.62 7.93 -2.39 -0.02 2.61 16 40 H 0.09 2.76 7.02 -2.39 -0.02 2.75 16 41 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 42 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -67.68 350.33 4.08 -63.59 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.31 Total: 10.09 kcal Atomic # 6 Polarization: 23.88 SS G_CDS: 7.17 Total: 31.05 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -5.74 Total: -114.54 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -1.01 Total: -28.56 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 1.54 Total: -4.09 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.81 Total: 42.46 kcal Total: -67.68 4.08 -63.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666235241.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.859 kcal (2) G-P(sol) polarization free energy of solvation -67.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds