Wall clock time and date at job start Sat Apr 11 2020 06:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46898 * 2 1 4 4 C 1.53004 * 109.47522 * 240.00305 * 2 1 3 5 5 N 1.46895 * 109.47035 * 184.99817 * 4 2 1 6 6 C 1.46906 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47109 * 179.97438 * 6 5 4 8 8 O 1.21296 * 119.99996 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99978 * 180.02562 * 7 6 5 10 10 C 1.37099 * 119.99848 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00405 * 359.97438 * 10 9 7 12 12 C 1.38953 * 119.99358 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99517 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00588 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.47149 * 89.99828 * 14 12 10 16 16 H 1.48498 * 109.47388 * 209.99797 * 14 12 10 17 17 H 1.48501 * 109.46930 * 330.00192 * 14 12 10 18 18 N 1.46503 * 109.47499 * 119.99933 * 2 1 3 19 19 C 1.34771 * 120.00107 * 275.00916 * 18 2 1 20 20 O 1.21591 * 119.99993 * 359.97438 * 19 18 2 21 21 C 1.47545 * 119.99942 * 179.97438 * 19 18 2 22 22 C 1.39903 * 120.18818 * 89.72237 * 21 19 18 23 23 F 1.35099 * 120.09883 * 359.97438 * 22 21 19 24 24 C 1.38225 * 119.80512 * 179.79019 * 22 21 19 25 25 C 1.38308 * 120.18541 * 0.48792 * 24 22 21 26 26 C 1.38297 * 120.38656 * 359.73652 * 25 24 22 27 27 C 1.38224 * 120.19375 * 0.03002 * 26 25 24 28 28 F 1.35098 * 120.09850 * 179.97438 * 27 26 25 29 29 H 1.09003 * 109.46643 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47549 * 299.99706 * 1 2 3 31 31 H 1.08994 * 109.47227 * 60.00484 * 1 2 3 32 32 H 1.08996 * 109.46863 * 64.99659 * 4 2 1 33 33 H 1.09002 * 109.46661 * 304.99836 * 4 2 1 34 34 H 1.00902 * 111.00273 * 303.95364 * 5 4 2 35 35 H 1.08992 * 109.47459 * 299.99826 * 6 5 4 36 36 H 1.09004 * 109.47040 * 59.99976 * 6 5 4 37 37 H 0.97002 * 119.99767 * 359.97438 * 9 7 6 38 38 H 0.96997 * 120.00211 * 180.02562 * 13 12 10 39 39 H 0.97002 * 119.99507 * 94.99584 * 18 2 1 40 40 H 1.07992 * 119.90353 * 180.24899 * 24 22 21 41 41 H 1.08000 * 119.80580 * 179.76865 * 25 24 22 42 42 H 1.08006 * 119.90659 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5041 -0.8265 -1.1904 6 6 4.0304 -1.5157 -2.3762 7 6 5.5318 -1.6041 -2.2807 8 8 6.1068 -1.1391 -1.3192 9 7 6.2356 -2.1997 -3.2637 10 6 7.6015 -2.2806 -3.1766 11 1 8.1135 -1.8666 -2.3205 12 6 8.3270 -2.8952 -4.1899 13 7 9.6362 -2.9722 -4.1066 14 14 7.4415 -3.6118 -5.6702 15 1 7.3212 -2.5738 -6.7254 16 1 8.2125 -4.7663 -6.1972 17 1 6.0866 -4.0649 -5.2649 18 7 2.0184 -0.6906 1.1962 19 6 2.1470 -0.0183 2.3571 20 8 1.8581 1.1615 2.4117 21 6 2.6384 -0.7140 3.5619 22 6 4.0090 -0.7589 3.8385 23 9 4.8887 -0.1653 3.0025 24 6 4.4603 -1.4090 4.9718 25 6 3.5619 -2.0227 5.8257 26 6 2.2057 -1.9872 5.5573 27 6 1.7367 -1.3374 4.4312 28 9 0.4114 -1.3043 4.1707 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.7517 -0.1582 -2.1369 33 1 1.6055 -1.7198 -1.2952 34 1 3.9280 0.0827 -1.0823 35 1 3.6097 -2.5197 -2.4295 36 1 3.7558 -0.9586 -3.2720 37 1 5.7757 -2.5718 -4.0324 38 1 10.1428 -3.4009 -4.8141 39 1 2.2490 -1.6318 1.1525 40 1 5.5177 -1.4412 5.1889 41 1 3.9216 -2.5322 6.7074 42 1 1.5110 -2.4687 6.2297 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669454147.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:02 Heat of formation + Delta-G solvation = -156.620690 kcal Electronic energy + Delta-G solvation = -29230.161230 eV Core-core repulsion = 24652.227773 eV Total energy + Delta-G solvation = -4577.933457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.19780 -50.16981 -41.17135 -40.29617 -39.42252 -37.85666 -36.08642 -35.22736 -33.74827 -33.05671 -31.44494 -31.35877 -29.11564 -26.68378 -25.57181 -24.45432 -23.93971 -22.55889 -21.71870 -21.26953 -20.28076 -19.50565 -18.79219 -18.44064 -18.05764 -17.58261 -17.10663 -16.85115 -16.77787 -16.53945 -16.47613 -16.22136 -15.95682 -15.58973 -15.54501 -15.29331 -15.12600 -14.87216 -14.67101 -14.31335 -14.08220 -13.86130 -13.47942 -13.16052 -13.10958 -13.07244 -12.98224 -12.92882 -12.84076 -12.75291 -12.41661 -11.98466 -11.91960 -11.51507 -11.26593 -10.45973 -10.25216 -10.22170 -10.19802 -9.89027 -9.37590 -8.41528 -6.02720 -0.33310 -0.13436 1.26290 1.30031 1.35811 1.44905 1.96263 1.98550 2.23134 2.26366 2.64481 2.69086 3.15000 3.27216 3.31763 3.46796 3.72016 3.74557 3.78439 4.08674 4.11199 4.18622 4.30030 4.45681 4.54431 4.59078 4.61313 4.63000 4.71066 4.72570 4.88922 4.95187 4.99212 5.10833 5.22089 5.38525 5.52234 5.62873 5.88047 6.01327 6.24941 6.33052 6.59588 6.88209 6.98541 7.39706 7.97397 8.76404 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.002696 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.759050 B =10382.788837 C =11735.601290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.140 3.860 3 H 0.063 0.937 4 C 0.057 3.943 5 N -0.687 5.687 6 C 0.064 3.936 7 C 0.446 3.554 8 O -0.615 6.615 9 N -0.590 5.590 10 C -0.329 4.329 11 H 0.052 0.948 12 C -0.016 4.016 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.228 1.228 18 N -0.685 5.685 19 C 0.563 3.437 20 O -0.574 6.574 21 C -0.223 4.223 22 C 0.133 3.867 23 F -0.143 7.143 24 C -0.161 4.161 25 C -0.026 4.026 26 C -0.150 4.150 27 C 0.145 3.855 28 F -0.132 7.132 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.339 0.661 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.390 0.610 38 H 0.279 0.721 39 H 0.413 0.587 40 H 0.167 0.833 41 H 0.196 0.804 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.007 -2.962 13.987 27.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.081 0.919 4 C -0.072 4.072 5 N -0.319 5.319 6 C -0.068 4.068 7 C 0.234 3.766 8 O -0.499 6.499 9 N -0.232 5.232 10 C -0.459 4.459 11 H 0.070 0.930 12 C -0.215 4.215 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.183 1.183 16 H -0.201 1.201 17 H -0.152 1.152 18 N -0.334 5.334 19 C 0.348 3.652 20 O -0.454 6.454 21 C -0.228 4.228 22 C 0.113 3.887 23 F -0.121 7.121 24 C -0.180 4.180 25 C -0.043 4.043 26 C -0.168 4.168 27 C 0.125 3.875 28 F -0.110 7.110 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.157 0.843 35 H 0.138 0.862 36 H 0.098 0.902 37 H 0.226 0.774 38 H 0.089 0.911 39 H 0.249 0.751 40 H 0.185 0.815 41 H 0.213 0.787 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -22.675 -2.426 14.871 27.225 hybrid contribution 0.530 0.469 -1.885 2.013 sum -22.145 -1.956 12.986 25.746 Atomic orbital electron populations 1.22052 0.92638 1.03495 1.02780 1.21156 0.95304 0.96380 0.83643 0.91855 1.22379 0.86634 1.02405 0.95793 1.60042 1.05533 1.26463 1.39840 1.21645 0.89308 1.02549 0.93325 1.21079 0.90903 0.81577 0.83067 1.90574 1.72987 1.51875 1.34495 1.42016 1.06056 1.53902 1.21262 1.18996 0.81997 1.37491 1.07373 0.92981 1.26151 0.96199 0.97276 1.01848 1.69812 1.07569 1.44496 1.35787 0.85334 0.79775 0.78768 0.77429 1.18252 1.20067 1.15152 1.45856 1.64556 1.14595 1.08394 1.18116 0.77052 0.86072 0.83939 1.90766 1.52044 1.16881 1.85721 1.19945 0.93788 1.08821 1.00230 1.17857 0.84556 0.95727 0.90516 1.91588 1.67989 1.81622 1.70902 1.21615 1.03856 0.99545 0.92935 1.21556 0.90554 0.93527 0.98680 1.21616 0.98331 1.00952 0.95940 1.17548 0.76633 0.98055 0.95244 1.91535 1.31005 1.94530 1.93962 0.90450 0.93943 0.89243 0.91149 0.87891 0.84309 0.86162 0.90232 0.77394 0.91146 0.75104 0.81523 0.78680 0.79853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.48 71.98 0.68 -1.91 16 2 C 0.14 3.10 2.81 44.99 0.13 3.22 16 3 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 4 C 0.06 1.06 5.24 86.31 0.45 1.51 16 5 N -0.69 -19.50 5.85 -517.92 -3.03 -22.53 16 6 C 0.06 1.83 6.17 85.56 0.53 2.36 16 7 C 0.45 19.99 7.82 87.66 0.69 20.68 16 8 O -0.62 -34.66 15.78 -3.08 -0.05 -34.71 16 9 N -0.59 -27.63 5.09 -306.98 -1.56 -29.19 16 10 C -0.33 -19.40 10.16 84.04 0.85 -18.55 16 11 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 12 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 13 N -0.94 -56.72 13.96 21.66 0.30 -56.42 16 14 Si 0.97 38.43 27.74 68.60 1.90 40.33 16 15 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 16 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 17 H -0.23 -7.50 6.52 99.48 0.65 -6.85 16 18 N -0.68 -17.53 4.80 -445.69 -2.14 -19.67 16 19 C 0.56 17.57 6.51 86.70 0.56 18.14 16 20 O -0.57 -22.07 16.77 -4.00 -0.07 -22.14 16 21 C -0.22 -5.90 5.64 -20.02 -0.11 -6.01 16 22 C 0.13 3.51 7.29 22.67 0.17 3.68 16 23 F -0.14 -4.94 16.83 44.97 0.76 -4.18 16 24 C -0.16 -2.68 10.01 22.28 0.22 -2.45 16 25 C -0.03 -0.24 10.03 22.30 0.22 -0.02 16 26 C -0.15 -1.73 10.01 22.28 0.22 -1.50 16 27 C 0.15 2.94 7.29 22.67 0.17 3.10 16 28 F -0.13 -2.89 16.83 44.97 0.76 -2.13 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.34 11.34 8.43 -89.69 -0.76 10.59 16 35 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.39 14.88 5.76 -92.71 -0.53 14.35 16 38 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.41 9.53 8.59 -92.71 -0.80 8.74 16 40 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 41 H 0.20 0.06 8.06 -2.91 -0.02 0.03 16 42 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -89.22 375.55 1.08 -88.14 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -1.04 Total: 40.70 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 5.25 Total: 21.81 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -6.43 Total: -127.81 kcal Atomic # 8 Polarization: -56.73 SS G_CDS: -0.12 Total: -56.85 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 1.51 Total: -6.32 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.90 Total: 40.33 kcal Total: -89.22 1.08 -88.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669454147.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.485 kcal (2) G-P(sol) polarization free energy of solvation -89.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds