Wall clock time and date at job start Sat Apr 11 2020 06:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47045 * 2 1 4 4 N 1.46504 * 109.46783 * 119.99750 * 2 1 3 5 5 C 1.34777 * 119.99858 * 274.99865 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.02562 * 5 4 2 8 8 N 1.46492 * 109.47441 * 180.02562 * 7 5 4 9 9 N 1.28599 * 124.62098 * 269.69887 * 8 7 5 10 10 C 1.31372 * 108.72293 * 179.82861 * 9 8 7 11 11 C 1.39678 * 105.89932 * 0.41629 * 10 9 8 12 12 N 1.28601 * 124.61966 * 89.99944 * 8 7 5 13 13 C 1.52995 * 109.47337 * 239.99704 * 2 1 3 14 14 H 1.09007 * 109.47080 * 299.99517 * 13 2 1 15 15 C 1.53000 * 109.47023 * 180.02562 * 13 2 1 16 16 N 1.46499 * 109.47455 * 60.00113 * 13 2 1 17 17 C 1.34777 * 120.00199 * 205.00257 * 16 13 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 13 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 16 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47035 * 59.99524 * 25 23 21 27 27 H 1.48499 * 109.47381 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46580 * 299.99884 * 25 23 21 29 29 H 1.08999 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47768 * 299.99985 * 1 2 3 31 31 H 1.09007 * 109.47256 * 60.00599 * 1 2 3 32 32 H 0.96991 * 120.00424 * 95.00767 * 4 2 1 33 33 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 34 34 H 1.08997 * 109.46780 * 60.00140 * 7 5 4 35 35 H 1.08004 * 127.05357 * 180.15940 * 10 9 8 36 36 H 1.08008 * 127.05199 * 179.77006 * 11 10 9 37 37 H 1.08998 * 109.46925 * 299.99562 * 15 13 2 38 38 H 1.08998 * 109.47598 * 59.99967 * 15 13 2 39 39 H 1.09005 * 109.47473 * 179.97438 * 15 13 2 40 40 H 0.97000 * 119.99484 * 24.99354 * 16 13 2 41 41 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 42 42 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 43 43 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 1.1963 5 6 2.1469 -0.0182 2.3572 6 8 1.8581 1.1585 2.4117 7 6 2.6497 -0.7283 3.5876 8 7 2.6983 0.2129 4.7091 9 7 3.7182 0.9346 5.0137 10 6 3.4203 1.6633 6.0654 11 6 2.1086 1.3250 6.4062 12 7 1.7287 0.4260 5.5266 13 6 2.0400 -0.7213 -1.2491 14 1 1.6767 -1.7490 -1.2491 15 6 3.5700 -0.7218 -1.2487 16 7 1.5518 -0.0308 -2.4454 17 6 1.4231 -0.7032 -3.6063 18 8 1.7119 -1.8799 -3.6608 19 6 0.9267 0.0086 -4.8384 20 16 0.8721 -1.1529 -6.2254 21 6 0.2745 -0.0864 -7.4942 22 1 0.0644 0.9499 -7.2742 23 6 0.0746 -0.5777 -8.7769 24 7 0.3321 -1.8404 -9.0455 25 14 -0.5583 0.5531 -10.1222 26 1 0.3935 1.6768 -10.3128 27 1 -0.6855 -0.2090 -11.3904 28 1 -1.8868 1.0903 -9.7328 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 2.2490 -1.6316 1.1528 33 1 1.9776 -1.5506 3.8327 34 1 3.6490 -1.1201 3.3981 35 1 4.0599 2.3747 6.5666 36 1 1.5260 1.7215 7.2247 37 1 3.9337 0.3057 -1.2486 38 1 3.9330 -1.2358 -0.3588 39 1 3.9335 -1.2361 -2.1385 40 1 1.3210 0.9104 -2.4018 41 1 -0.0733 0.4008 -4.6533 42 1 1.6006 0.8308 -5.0792 43 1 0.1921 -2.1839 -9.9418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677874036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:31 Heat of formation + Delta-G solvation = 39.934268 kcal Electronic energy + Delta-G solvation = -26212.562848 eV Core-core repulsion = 22229.285791 eV Total energy + Delta-G solvation = -3983.277057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.89718 -40.54876 -39.39064 -37.00053 -34.34067 -34.12719 -32.75881 -32.45507 -31.49550 -30.37277 -28.77326 -28.32282 -25.51346 -24.30544 -23.24445 -22.79549 -21.31004 -21.11556 -20.31805 -18.50669 -18.03865 -17.79405 -16.79682 -16.42417 -16.17964 -15.79797 -15.69038 -15.19100 -15.04895 -14.82771 -14.75664 -14.25017 -14.13340 -14.02014 -13.67846 -13.29831 -13.10739 -12.75459 -12.57565 -12.50981 -12.08125 -11.99369 -11.91189 -11.62381 -11.14965 -11.07748 -11.05833 -11.00203 -10.79796 -10.74731 -10.66230 -9.85907 -9.72038 -9.69772 -9.48375 -9.09599 -9.01719 -8.28525 -6.53605 -6.24352 -3.95357 1.32805 1.72445 1.95927 2.16395 2.51414 2.99076 3.05146 3.21897 3.26165 3.29953 3.66178 3.74440 3.98053 4.17881 4.22220 4.30689 4.40274 4.63034 4.69525 4.84008 5.00135 5.04441 5.10932 5.18782 5.22199 5.37410 5.44237 5.56698 5.59840 5.61894 5.76312 5.82090 5.83730 5.92171 5.96102 6.06005 6.09948 6.21959 6.51056 6.84275 7.55828 7.56683 7.59055 7.95838 8.32320 8.50852 9.21064 10.82967 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.038843 B = 0.001656 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.685632 B =16907.085655 C =17169.786333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 H 0.095 0.905 4 N -0.714 5.714 5 C 0.505 3.495 6 O -0.517 6.517 7 C 0.123 3.877 8 N -0.146 5.146 9 N -0.281 5.281 10 C -0.023 4.023 11 C -0.024 4.024 12 N -0.282 5.282 13 C 0.138 3.862 14 H 0.094 0.906 15 C -0.164 4.164 16 N -0.731 5.731 17 C 0.537 3.463 18 O -0.515 6.515 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.405 0.595 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.199 0.801 36 H 0.199 0.801 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.270 3.814 29.758 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.033 3.967 3 H 0.113 0.887 4 N -0.367 5.367 5 C 0.288 3.712 6 O -0.391 6.391 7 C -0.002 4.002 8 N -0.046 5.046 9 N -0.122 5.122 10 C -0.207 4.207 11 C -0.207 4.207 12 N -0.122 5.122 13 C 0.032 3.968 14 H 0.112 0.888 15 C -0.223 4.223 16 N -0.386 5.386 17 C 0.323 3.677 18 O -0.389 6.389 19 C -0.305 4.305 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.240 0.760 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.215 0.785 36 H 0.215 0.785 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.234 0.766 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.498 1.645 28.483 29.056 hybrid contribution -0.723 2.782 -0.079 2.875 sum 4.776 4.427 28.404 29.141 Atomic orbital electron populations 1.22180 0.94168 1.02931 1.02957 1.21198 0.94846 0.97604 0.83011 0.88746 1.45774 1.67571 1.14294 1.09073 1.20427 0.78594 0.87757 0.84447 1.90813 1.48463 1.15464 1.84351 1.21668 1.06977 0.89890 0.81653 1.47274 1.05500 1.30230 1.21581 1.74055 1.15222 1.06856 1.16045 1.24811 0.97204 1.02681 0.95955 1.24814 0.96145 0.98453 1.01264 1.74057 1.16810 1.18445 1.02876 1.20995 0.94449 0.97796 0.83554 0.88766 1.22204 0.94835 1.02480 1.02747 1.45942 1.69596 1.13978 1.09099 1.20309 0.76623 0.87189 0.83588 1.90701 1.48120 1.15751 1.84342 1.23541 1.03789 1.04931 0.98234 1.85372 1.86536 1.12817 0.98496 1.22828 1.51296 0.98161 0.96244 0.90952 1.24985 0.95030 0.95548 0.97940 1.70004 1.45420 1.13278 1.21584 0.86225 0.79321 0.80026 0.79948 1.19929 1.20788 1.19932 0.91904 0.91958 0.90848 0.75959 0.84306 0.84278 0.78456 0.78461 0.92351 0.91962 0.91158 0.76630 0.89138 0.89130 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.33 37.16 0.35 -1.10 16 2 C 0.14 1.15 2.21 -67.93 -0.15 1.00 16 3 H 0.09 0.91 7.58 -51.93 -0.39 0.51 16 4 N -0.71 -4.47 4.38 -53.81 -0.24 -4.70 16 5 C 0.50 4.22 7.86 -10.98 -0.09 4.13 16 6 O -0.52 -6.86 16.09 5.55 0.09 -6.77 16 7 C 0.12 0.70 7.02 -5.20 -0.04 0.66 16 8 N -0.15 -1.39 3.44 -11.67 -0.04 -1.43 16 9 N -0.28 -2.85 12.05 30.67 0.37 -2.48 16 10 C -0.02 -0.18 12.20 -17.21 -0.21 -0.39 16 11 C -0.02 -0.18 12.20 -17.21 -0.21 -0.39 16 12 N -0.28 -2.85 12.05 30.68 0.37 -2.48 16 13 C 0.14 1.36 2.20 -67.93 -0.15 1.21 16 14 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 15 C -0.16 -1.55 9.33 37.16 0.35 -1.21 16 16 N -0.73 -8.70 4.38 -53.81 -0.24 -8.93 16 17 C 0.54 9.24 7.81 -10.98 -0.09 9.15 16 18 O -0.52 -10.82 15.53 5.55 0.09 -10.73 16 19 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 20 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 21 C -0.54 -15.08 9.50 30.94 0.29 -14.79 16 22 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 25 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.66 7.45 -51.93 -0.39 0.27 16 32 H 0.41 1.34 8.39 -40.82 -0.34 1.00 16 33 H 0.14 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.14 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.20 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.20 0.78 8.06 -52.48 -0.42 0.35 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.44 7.44 -51.93 -0.39 0.05 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.40 3.82 8.39 -40.82 -0.34 3.47 16 41 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 388.07 15.07 5.85 5.85 Total: -1.00 -39.90 388.07 -6.08 -45.98 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.02 Total: 0.89 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 0.18 Total: -2.49 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.96 Total: -45.14 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.18 Total: -17.50 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.90 -6.08 -45.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677874036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.917 kcal (2) G-P(sol) polarization free energy of solvation -39.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds