Wall clock time and date at job start Sat Apr 11 2020 06:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08992 * 109.46962 * 2 1 4 4 C 1.52999 * 109.46890 * 120.00114 * 2 1 3 5 5 N 1.46504 * 109.46552 * 174.99831 * 4 2 1 6 6 C 1.34778 * 119.99616 * 179.97438 * 5 4 2 7 7 O 1.21283 * 120.00244 * 0.02562 * 6 5 4 8 8 C 1.50708 * 119.99921 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.47052 * 180.02562 * 8 6 5 10 10 C 1.76204 * 99.99817 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99772 * 0.02562 * 10 9 8 12 12 C 1.38798 * 119.99924 * 180.02562 * 10 9 8 13 13 N 1.31634 * 119.99971 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00002 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47015 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47184 * 119.99786 * 14 12 10 17 17 H 1.48502 * 109.46986 * 240.00011 * 14 12 10 18 18 N 1.46500 * 109.47001 * 240.00034 * 2 1 3 19 19 C 1.46502 * 120.00077 * 300.00271 * 18 2 1 20 20 C 1.34773 * 119.99722 * 119.99616 * 18 2 1 21 21 O 1.21281 * 120.00442 * 0.02562 * 20 18 2 22 22 C 1.50705 * 119.99762 * 179.97438 * 20 18 2 23 23 N 1.46500 * 109.47081 * 180.02562 * 22 20 18 24 24 C 1.34429 * 126.81895 * 124.99841 * 23 22 20 25 25 N 1.30837 * 108.07952 * 180.02562 * 24 23 22 26 26 C 1.33246 * 109.82318 * 359.97438 * 25 24 23 27 27 N 1.30712 * 108.94935 * 0.27015 * 26 25 24 28 28 H 1.08994 * 109.46903 * 59.99695 * 1 2 3 29 29 H 1.09000 * 109.46814 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47030 * 299.99880 * 1 2 3 31 31 H 1.08995 * 109.47045 * 294.99547 * 4 2 1 32 32 H 1.09000 * 109.47257 * 55.00606 * 4 2 1 33 33 H 0.96998 * 120.00464 * 0.02562 * 5 4 2 34 34 H 1.08995 * 109.47273 * 300.00931 * 8 6 5 35 35 H 1.09000 * 109.46340 * 60.01014 * 8 6 5 36 36 H 0.96998 * 119.99619 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.46493 * 269.99739 * 19 18 2 38 38 H 1.08996 * 109.47228 * 29.99514 * 19 18 2 39 39 H 1.08998 * 109.47136 * 149.99971 * 19 18 2 40 40 H 1.09002 * 109.47196 * 60.00345 * 22 20 18 41 41 H 1.08995 * 109.47509 * 300.00521 * 22 20 18 42 42 H 1.08000 * 125.96300 * 0.02949 * 24 23 22 43 43 H 1.08002 * 125.52127 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1905 6 6 4.1731 -1.4283 2.1911 7 8 3.5701 -1.8833 3.1399 8 6 5.6751 -1.5370 2.1304 9 16 6.2784 -2.3902 3.6083 10 6 8.0102 -2.3773 3.2834 11 1 8.3864 -1.9241 2.3782 12 6 8.8908 -2.9495 4.1909 13 7 8.4322 -3.5014 5.2945 14 14 10.7268 -2.9352 3.8469 15 1 10.9820 -2.2592 2.5495 16 1 11.4282 -2.2045 4.9328 17 1 11.2296 -4.3311 3.7845 18 7 2.0184 -0.6906 -1.1962 19 6 1.6644 -2.0932 -1.4281 20 6 2.7931 -0.0356 -2.0833 21 8 3.0865 1.1255 -1.8912 22 6 3.2959 -0.7461 -3.3136 23 7 4.1102 0.1746 -4.1108 24 6 5.3746 -0.0194 -4.5238 25 7 5.7444 1.0330 -5.2075 26 6 4.7473 1.9157 -5.2528 27 7 3.7267 1.4375 -4.5908 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -0.1583 2.1369 32 1 1.6055 -1.7199 1.2951 33 1 3.9825 -0.4622 0.4318 34 1 5.9630 -2.1005 1.2429 35 1 6.1099 -0.5386 2.0839 36 1 9.0477 -3.9010 5.9289 37 1 2.4158 -2.7377 -0.9717 38 1 0.6905 -2.3002 -0.9847 39 1 1.6238 -2.2852 -2.5002 40 1 2.4484 -1.0891 -3.9070 41 1 3.9016 -1.6023 -3.0166 42 1 5.9797 -0.8918 -4.3258 43 1 4.7790 2.8732 -5.7514 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678085769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:39 Heat of formation + Delta-G solvation = 33.594611 kcal Electronic energy + Delta-G solvation = -27041.475434 eV Core-core repulsion = 23057.923469 eV Total energy + Delta-G solvation = -3983.551965 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -42.35235 -40.63753 -39.10615 -37.02117 -34.65043 -34.06579 -32.45735 -32.16859 -31.44469 -29.49008 -28.42202 -27.47658 -26.03465 -25.40249 -23.17186 -22.26380 -21.59605 -20.41559 -19.61659 -18.14320 -17.92400 -17.55945 -16.73088 -16.51837 -16.17621 -16.07751 -15.32822 -15.30429 -14.94813 -14.82843 -14.42692 -14.10222 -14.03334 -13.86525 -13.60123 -13.35894 -13.08358 -13.01674 -12.80839 -12.68847 -12.57954 -12.25452 -12.13584 -11.83746 -11.33321 -11.08897 -11.04856 -10.77928 -10.65973 -10.28847 -10.03908 -9.85660 -9.83919 -9.50242 -9.21149 -9.10750 -8.97548 -8.27516 -6.53742 -6.24746 -3.95601 1.29833 1.79842 2.02477 2.42892 2.74416 2.97841 3.03012 3.19918 3.26564 3.31151 3.63491 3.75700 4.04938 4.06334 4.17686 4.33601 4.37259 4.54316 4.58040 4.64610 4.80637 4.90809 4.99894 5.08827 5.10704 5.15255 5.21329 5.32834 5.43847 5.58353 5.65671 5.75975 5.82961 5.89016 5.98658 6.08970 6.15729 6.40168 6.51424 6.76043 7.56909 7.57917 7.62076 7.80676 8.32676 8.53246 9.20959 10.82716 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009738 B = 0.002887 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.582196 B = 9695.180887 C =12075.573442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 H 0.109 0.891 4 C 0.113 3.887 5 N -0.736 5.736 6 C 0.532 3.468 7 O -0.517 6.517 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.280 1.280 18 N -0.608 5.608 19 C 0.067 3.933 20 C 0.501 3.499 21 O -0.506 6.506 22 C 0.113 3.887 23 N -0.373 5.373 24 C 0.258 3.742 25 N -0.543 5.543 26 C 0.194 3.806 27 N -0.293 5.293 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.396 0.604 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.119 0.881 41 H 0.133 0.867 42 H 0.221 0.779 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.983 3.769 -20.758 26.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.127 0.873 4 C -0.012 4.012 5 N -0.391 5.391 6 C 0.318 3.682 7 O -0.391 6.391 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 N -0.343 5.343 19 C -0.076 4.076 20 C 0.286 3.714 21 O -0.379 6.379 22 C -0.014 4.014 23 N -0.164 5.164 24 C -0.039 4.039 25 N -0.269 5.269 26 C -0.109 4.109 27 N -0.119 5.119 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.230 0.770 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.137 0.863 41 H 0.151 0.849 42 H 0.237 0.763 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -17.210 3.929 -18.914 25.872 hybrid contribution 2.102 0.326 -1.488 2.596 sum -15.107 4.255 -20.403 25.741 Atomic orbital electron populations 1.22060 0.93393 1.02912 1.03271 1.21430 0.95039 0.98378 0.82945 0.87299 1.21651 0.81327 1.01172 0.97090 1.45933 1.06777 1.61872 1.24473 1.20312 0.89504 0.76759 0.81596 1.90705 1.69856 1.46123 1.32403 1.23525 0.93557 1.05679 1.07613 1.85379 1.04686 1.72885 1.20286 1.22906 0.91493 1.44238 1.09733 0.90893 1.24995 0.99631 0.94509 0.94430 1.70027 1.35344 1.35520 1.09392 0.86115 0.82916 0.77997 0.78473 1.19584 1.20521 1.20536 1.47883 1.50913 1.12845 1.22709 1.21945 1.02584 0.81052 1.01985 1.20474 0.79210 0.87448 0.84297 1.90830 1.56051 1.15905 1.75126 1.21641 0.97668 0.90846 0.91219 1.50014 1.11858 1.14261 1.40311 1.26157 0.84515 0.99378 0.93803 1.70559 1.30590 1.02440 1.23353 1.26034 0.86725 1.00384 0.97780 1.78166 1.24217 0.93098 1.16430 0.91663 0.91706 0.90599 0.90317 0.91125 0.77043 0.89451 0.89312 0.92213 0.91440 0.90012 0.90946 0.86336 0.84947 0.76312 0.76733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.17 37.16 0.34 -0.58 16 2 C 0.13 1.00 2.80 -67.93 -0.19 0.81 16 3 H 0.11 1.11 6.90 -51.93 -0.36 0.75 16 4 C 0.11 1.17 4.97 -4.04 -0.02 1.15 16 5 N -0.74 -9.58 5.39 -60.29 -0.32 -9.91 16 6 C 0.53 9.65 7.85 -10.98 -0.09 9.56 16 7 O -0.52 -11.33 15.86 5.56 0.09 -11.24 16 8 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 11 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 14 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 N -0.61 -4.14 2.24 -173.93 -0.39 -4.53 16 19 C 0.07 0.25 9.40 59.85 0.56 0.82 16 20 C 0.50 4.39 7.41 -10.98 -0.08 4.31 16 21 O -0.51 -6.85 15.06 5.56 0.08 -6.77 16 22 C 0.11 0.63 5.59 -5.19 -0.03 0.60 16 23 N -0.37 -3.40 3.41 -63.81 -0.22 -3.62 16 24 C 0.26 2.19 12.63 -90.65 -1.14 1.04 16 25 N -0.54 -6.01 11.19 -15.83 -0.18 -6.19 16 26 C 0.19 2.06 13.03 -91.81 -1.20 0.86 16 27 N -0.29 -3.47 11.80 29.29 0.35 -3.12 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.30 6.66 -51.93 -0.35 -0.04 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.72 7.84 -51.93 -0.41 0.31 16 33 H 0.40 4.72 7.87 -40.82 -0.32 4.39 16 34 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 35 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.26 6.43 -51.93 -0.33 -0.07 16 39 H 0.07 0.09 6.44 -51.93 -0.33 -0.24 16 40 H 0.12 0.38 7.40 -51.93 -0.38 0.00 16 41 H 0.13 0.28 8.05 -51.93 -0.42 -0.14 16 42 H 0.22 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.22 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -40.63 382.29 -8.59 -49.22 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.83 Total: 0.28 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.42 Total: 2.86 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.03 Total: -52.59 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.17 Total: -18.00 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -40.63 -8.59 -49.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678085769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.811 kcal (2) G-P(sol) polarization free energy of solvation -40.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds