Wall clock time and date at job start Sat Apr 11 2020 06:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 C 1.52997 * 109.47061 * 239.99293 * 2 1 3 5 5 N 1.46503 * 109.47194 * 184.99902 * 4 2 1 6 6 C 1.46494 * 120.00043 * 270.00564 * 5 4 2 7 7 C 1.34776 * 119.99987 * 89.99985 * 5 4 2 8 8 O 1.21287 * 119.99995 * 0.02562 * 7 5 4 9 9 C 1.50694 * 120.00381 * 180.02562 * 7 5 4 10 10 S 1.80997 * 109.47634 * 180.02562 * 9 7 5 11 11 C 1.76197 * 100.00227 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99949 * 0.02562 * 11 10 9 13 13 C 1.38799 * 119.99852 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00088 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99892 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47328 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47294 * 120.00103 * 15 13 11 18 18 H 1.48500 * 109.47140 * 239.99934 * 15 13 11 19 19 N 1.46510 * 109.46886 * 119.99753 * 2 1 3 20 20 C 1.34772 * 119.99616 * 275.00023 * 19 2 1 21 21 O 1.21623 * 120.00414 * 354.62134 * 20 19 2 22 22 C 1.47239 * 119.99759 * 174.62376 * 20 19 2 23 23 C 1.36999 * 127.18926 * 4.88498 * 22 20 19 24 24 N 1.33317 * 106.37315 * 179.97438 * 23 22 20 25 25 N 1.28516 * 109.43916 * 0.02562 * 24 23 22 26 26 N 1.28713 * 110.63281 * 359.75245 * 25 24 23 27 27 C 1.46508 * 126.03183 * 180.26438 * 26 25 24 28 28 H 1.09000 * 109.47180 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47296 * 300.00195 * 1 2 3 30 30 H 1.09000 * 109.46799 * 60.00557 * 1 2 3 31 31 H 1.08996 * 109.47516 * 305.00302 * 4 2 1 32 32 H 1.09005 * 109.46984 * 65.00476 * 4 2 1 33 33 H 1.09008 * 109.47298 * 89.99770 * 6 5 4 34 34 H 1.09000 * 109.47185 * 209.99856 * 6 5 4 35 35 H 1.09002 * 109.47824 * 329.99723 * 6 5 4 36 36 H 1.09003 * 109.46986 * 300.00595 * 9 7 5 37 37 H 1.09005 * 109.46842 * 60.00378 * 9 7 5 38 38 H 0.96998 * 119.99803 * 179.97438 * 14 13 11 39 39 H 0.96996 * 119.99853 * 94.99972 * 19 2 1 40 40 H 1.08005 * 126.81236 * 0.02562 * 23 22 20 41 41 H 1.09000 * 109.46679 * 273.39200 * 27 26 25 42 42 H 1.08996 * 109.47303 * 33.38865 * 27 26 25 43 43 H 1.08999 * 109.47261 * 153.39634 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1905 6 6 4.3343 0.2339 -1.7612 7 6 4.0758 -1.8987 -0.6114 8 8 3.3851 -2.7768 -0.1392 9 6 5.5776 -2.0067 -0.5505 10 16 6.0387 -3.5473 0.2801 11 6 7.7946 -3.4176 0.2126 12 1 8.2552 -2.5572 -0.2498 13 6 8.5859 -4.4209 0.7548 14 7 8.0246 -5.4694 1.3189 15 14 10.4475 -4.2831 0.6839 16 1 10.8247 -3.0181 0.0035 17 1 10.9969 -4.2854 2.0635 18 1 11.0007 -5.4359 -0.0712 19 7 2.0183 -0.6906 1.1963 20 6 2.1470 -0.0182 2.3572 21 8 1.9520 1.1819 2.3897 22 6 2.5237 -0.7364 3.5861 23 6 2.8660 -2.0579 3.7010 24 7 3.1287 -2.2673 4.9911 25 7 2.9670 -1.1720 5.6438 26 7 2.6097 -0.2214 4.8530 27 6 2.3402 1.1658 5.2397 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7199 -1.2950 32 1 1.7517 -0.1585 -2.1369 33 1 4.5400 0.9847 -0.9982 34 1 5.2734 -0.1927 -2.1137 35 1 3.8104 0.6987 -2.5964 36 1 5.9834 -2.0042 -1.5622 37 1 5.9805 -1.1595 0.0047 38 1 8.5776 -6.1706 1.6974 39 1 2.2490 -1.6317 1.1528 40 1 2.9144 -2.7855 2.9043 41 1 1.3009 1.2598 5.5545 42 1 2.9962 1.4474 6.0633 43 1 2.5229 1.8222 4.3889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001679908866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:37 Heat of formation + Delta-G solvation = 33.215414 kcal Electronic energy + Delta-G solvation = -28109.442930 eV Core-core repulsion = 24125.874522 eV Total energy + Delta-G solvation = -3983.568408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.23540 -40.31160 -39.18650 -36.40411 -35.01557 -34.44140 -32.45064 -32.34061 -30.56450 -29.54799 -28.07729 -27.40790 -25.76411 -25.32024 -24.30708 -22.63105 -21.28698 -20.57812 -19.46196 -18.27844 -17.70744 -16.95252 -16.80647 -16.65759 -16.45428 -15.88502 -15.43636 -14.89801 -14.82281 -14.51628 -14.16758 -14.02093 -13.67092 -13.42308 -13.33731 -13.11951 -13.03863 -12.92186 -12.62199 -12.58698 -12.36918 -12.05743 -11.95885 -11.91288 -11.38747 -11.08494 -11.05110 -11.04606 -10.77889 -10.24649 -10.16224 -9.83407 -9.61076 -9.52518 -9.24559 -9.09390 -8.71553 -8.29164 -6.53872 -6.24162 -3.95263 0.91496 2.05430 2.37682 2.73621 2.81873 3.02209 3.04389 3.20539 3.24336 3.29771 3.52213 4.17265 4.30875 4.43089 4.53730 4.66666 4.76337 4.87088 4.88314 5.00413 5.03537 5.08174 5.11681 5.17713 5.23618 5.33053 5.38349 5.45847 5.54880 5.58636 5.62122 5.73652 5.80086 5.91852 6.05058 6.07416 6.22870 6.36482 6.45717 7.28597 7.32454 7.57749 7.92288 8.32331 8.33305 8.40285 9.21783 10.83205 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.009754 B = 0.004020 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.971707 B = 6963.024326 C = 8919.016699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.127 3.873 3 H 0.092 0.908 4 C 0.106 3.894 5 N -0.622 5.622 6 C 0.079 3.921 7 C 0.540 3.460 8 O -0.523 6.523 9 C -0.154 4.154 10 S -0.055 6.055 11 C -0.537 4.537 12 H 0.072 0.928 13 C 0.076 3.924 14 N -0.865 5.865 15 Si 0.917 3.083 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.279 1.279 19 N -0.702 5.702 20 C 0.603 3.397 21 O -0.549 6.549 22 C -0.082 4.082 23 C 0.023 3.977 24 N -0.266 5.266 25 N -0.062 5.062 26 N -0.259 5.259 27 C 0.076 3.924 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.268 0.732 39 H 0.417 0.583 40 H 0.203 0.797 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.795 15.598 -3.505 21.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 H 0.110 0.890 4 C -0.018 4.018 5 N -0.357 5.357 6 C -0.064 4.064 7 C 0.329 3.671 8 O -0.399 6.399 9 C -0.304 4.304 10 S 0.171 5.829 11 C -0.685 4.685 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.500 5.500 15 Si 0.743 3.257 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.205 1.205 19 N -0.358 5.358 20 C 0.387 3.613 21 O -0.427 6.427 22 C -0.216 4.216 23 C -0.138 4.138 24 N -0.129 5.129 25 N -0.043 5.043 26 N -0.056 5.056 27 C -0.065 4.065 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.259 0.741 40 H 0.220 0.780 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.599 14.613 -1.257 21.411 hybrid contribution 1.981 1.173 -1.671 2.844 sum -13.618 15.786 -2.927 21.053 Atomic orbital electron populations 1.22143 0.94336 1.02831 1.02800 1.21502 0.94356 0.97945 0.84038 0.88975 1.21831 0.80621 1.02724 0.96657 1.47867 1.05945 1.22052 1.59826 1.21823 0.95901 0.90440 0.98283 1.20401 0.90456 0.80096 0.76134 1.90585 1.64471 1.38838 1.45988 1.23582 0.93288 1.07884 1.05679 1.85304 1.05919 1.17827 1.73832 1.22866 0.90986 1.09787 1.44868 0.90972 1.24969 0.99508 0.94492 0.94437 1.70011 1.35848 1.08558 1.35561 0.86148 0.83250 0.78228 0.78069 1.19659 1.20526 1.20519 1.46031 1.65886 1.15703 1.08228 1.16657 0.76673 0.85909 0.82028 1.90733 1.52295 1.13716 1.85975 1.21847 1.15860 0.95536 0.88315 1.24132 0.99583 0.94085 0.95993 1.74963 1.17184 1.16232 1.04479 1.78273 1.15165 0.91717 1.19117 1.47586 1.41955 1.11437 1.04653 1.22524 1.03719 0.75596 1.04634 0.91794 0.91850 0.91167 0.88838 0.88795 0.92679 0.90446 0.91101 0.89157 0.89345 0.92162 0.74146 0.77983 0.89034 0.88140 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.92 16 2 C 0.13 1.23 2.92 -67.93 -0.20 1.04 16 3 H 0.09 0.94 7.50 -51.93 -0.39 0.55 16 4 C 0.11 0.96 5.19 -4.04 -0.02 0.94 16 5 N -0.62 -7.25 2.77 -181.57 -0.50 -7.75 16 6 C 0.08 0.70 10.28 59.84 0.62 1.32 16 7 C 0.54 8.77 6.99 -10.99 -0.08 8.69 16 8 O -0.52 -9.63 13.18 5.55 0.07 -9.56 16 9 C -0.15 -2.89 4.71 36.00 0.17 -2.72 16 10 S -0.06 -1.42 20.57 -107.50 -2.21 -3.63 16 11 C -0.54 -14.92 9.50 30.94 0.29 -14.62 16 12 H 0.07 1.91 7.80 -52.49 -0.41 1.51 16 13 C 0.08 2.12 5.49 -17.43 -0.10 2.03 16 14 N -0.86 -25.69 13.22 55.49 0.73 -24.95 16 15 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 N -0.70 -8.74 4.47 -54.94 -0.25 -8.99 16 20 C 0.60 8.36 7.76 -12.61 -0.10 8.26 16 21 O -0.55 -7.99 14.40 5.26 0.08 -7.91 16 22 C -0.08 -1.22 6.98 -82.34 -0.57 -1.80 16 23 C 0.02 0.37 11.54 -17.36 -0.20 0.17 16 24 N -0.27 -4.80 12.35 30.47 0.38 -4.43 16 25 N -0.06 -1.01 13.14 60.35 0.79 -0.22 16 26 N -0.26 -3.64 3.79 -64.12 -0.24 -3.88 16 27 C 0.08 0.71 11.06 59.85 0.66 1.37 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.95 7.42 -51.93 -0.39 0.56 16 32 H 0.09 0.56 7.89 -51.93 -0.41 0.15 16 33 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 34 H 0.08 0.72 6.44 -51.93 -0.33 0.39 16 35 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 36 H 0.09 1.58 7.40 -51.91 -0.38 1.20 16 37 H 0.09 1.61 8.11 -51.91 -0.42 1.18 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.42 5.72 4.86 -40.82 -0.20 5.53 16 40 H 0.20 3.12 7.56 -52.48 -0.40 2.72 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.12 1.14 6.20 -51.93 -0.32 0.82 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -35.38 376.93 -5.40 -40.78 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.73 Total: 4.86 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 0.83 Total: 3.76 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.91 Total: -50.22 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.15 Total: -17.48 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.21 Total: -3.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.38 -5.40 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679908866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.999 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds