Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.46939 * 2 1 4 4 C 1.53003 * 109.47072 * 119.99253 * 2 1 3 5 5 N 1.46499 * 109.47218 * 175.00199 * 4 2 1 6 6 C 1.46500 * 119.99995 * 270.00227 * 5 4 2 7 7 C 1.34769 * 120.00089 * 90.00202 * 5 4 2 8 8 O 1.21284 * 120.00308 * 359.97438 * 7 5 4 9 9 C 1.50700 * 120.00396 * 180.02562 * 7 5 4 10 10 S 1.80996 * 109.47442 * 180.02562 * 9 7 5 11 11 C 1.76204 * 99.99968 * 180.02562 * 10 9 7 12 12 H 1.07992 * 120.00186 * 359.97438 * 11 10 9 13 13 C 1.38802 * 119.99987 * 179.97438 * 11 10 9 14 14 N 1.31627 * 120.00049 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99744 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47412 * 90.00137 * 15 13 11 17 17 H 1.48507 * 109.47062 * 209.99631 * 15 13 11 18 18 H 1.48496 * 109.47622 * 329.99540 * 15 13 11 19 19 N 1.46498 * 109.47441 * 239.99647 * 2 1 3 20 20 C 1.34774 * 119.99911 * 84.99937 * 19 2 1 21 21 O 1.21616 * 120.00194 * 5.19187 * 20 19 2 22 22 C 1.47232 * 119.99898 * 185.18788 * 20 19 2 23 23 C 1.37009 * 127.18990 * 5.53786 * 22 20 19 24 24 N 1.33317 * 106.37112 * 180.23805 * 23 22 20 25 25 N 1.28517 * 109.44152 * 359.77751 * 24 23 22 26 26 N 1.28718 * 110.63645 * 359.97438 * 25 24 23 27 27 C 1.46500 * 126.03421 * 179.97438 * 26 25 24 28 28 H 1.09001 * 109.47442 * 300.00716 * 1 2 3 29 29 H 1.09004 * 109.46804 * 60.00373 * 1 2 3 30 30 H 1.09000 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47135 * 295.00319 * 4 2 1 32 32 H 1.09002 * 109.46908 * 55.00347 * 4 2 1 33 33 H 1.09008 * 109.47024 * 89.99960 * 6 5 4 34 34 H 1.08997 * 109.47198 * 209.99994 * 6 5 4 35 35 H 1.09002 * 109.47481 * 330.00534 * 6 5 4 36 36 H 1.09006 * 109.47122 * 300.00366 * 9 7 5 37 37 H 1.09003 * 109.47076 * 59.99703 * 9 7 5 38 38 H 0.96997 * 119.99745 * 180.02562 * 14 13 11 39 39 H 0.96998 * 120.00149 * 265.00119 * 19 2 1 40 40 H 1.07992 * 126.81215 * 359.97438 * 23 22 20 41 41 H 1.09004 * 109.47162 * 85.80121 * 27 26 25 42 42 H 1.08998 * 109.47026 * 205.80446 * 27 26 25 43 43 H 1.08997 * 109.46825 * 325.80700 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 7 3.5000 -0.8262 1.1908 6 6 4.1258 -1.9918 0.5615 7 6 4.2674 0.1494 1.7157 8 8 3.7494 1.1146 2.2362 9 6 5.7693 0.0416 1.6549 10 16 6.5108 1.4949 2.4385 11 6 8.2191 1.1166 2.2304 12 1 8.5135 0.2025 1.7364 13 6 9.1865 1.9935 2.7015 14 7 10.4627 1.7111 2.5456 15 14 8.6773 3.5742 3.5566 16 1 8.5456 3.3279 5.0151 17 1 9.7074 4.6179 3.3220 18 1 7.3742 4.0338 3.0126 19 7 2.0184 -0.6907 -1.1961 20 6 2.1471 -0.0184 -2.3571 21 8 1.9488 1.1810 -2.3905 22 6 2.5279 -0.7360 -3.5849 23 6 2.6829 -2.0885 -3.7395 24 7 3.0361 -2.2835 -5.0101 25 7 3.0963 -1.1517 -5.6159 26 7 2.7986 -0.1909 -4.8128 27 6 2.7623 1.2343 -5.1500 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.7515 -0.1581 2.1370 32 1 1.6053 -1.7197 1.2953 33 1 4.2798 -1.7932 -0.4992 34 1 5.0863 -2.1897 1.0373 35 1 3.4769 -2.8599 0.6780 36 1 6.0907 -0.8578 2.1805 37 1 6.0879 -0.0127 0.6139 38 1 11.1386 2.3238 2.8751 39 1 2.2491 -1.6318 -1.1525 40 1 2.5499 -2.8458 -2.9812 41 1 1.7863 1.4845 -5.5661 42 1 2.9361 1.8250 -4.2506 43 1 3.5373 1.4537 -5.8843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001679908867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = 5.373896 kcal Electronic energy + Delta-G solvation = -27522.981580 eV Core-core repulsion = 23538.205873 eV Total energy + Delta-G solvation = -3984.775707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -44.40955 -41.31790 -40.44181 -37.66748 -35.93720 -35.44771 -34.69338 -33.51983 -31.77042 -30.85894 -29.06472 -28.20841 -27.87984 -26.55855 -25.35815 -23.74027 -22.34778 -21.71643 -20.80210 -19.63364 -19.25371 -18.19390 -17.93032 -17.86504 -17.34541 -17.18590 -17.00221 -16.64317 -16.08722 -15.81556 -15.45922 -15.21950 -14.98264 -14.71936 -14.58972 -14.30971 -13.95921 -13.86283 -13.73407 -13.57993 -13.37985 -13.29874 -13.19627 -13.06421 -12.95633 -12.81661 -12.57881 -12.25438 -12.10062 -11.89040 -11.37235 -11.28713 -11.19099 -10.96742 -10.70407 -10.54520 -10.31993 -9.67544 -9.02201 -8.53745 -6.24599 -0.19611 0.96641 1.02720 1.18030 1.29037 1.44306 1.51482 1.53866 1.91696 1.94915 2.12565 2.23023 2.66911 2.84679 3.24736 3.37026 3.58121 3.67540 3.75218 3.98337 4.07625 4.14070 4.15289 4.22085 4.34798 4.43514 4.48411 4.56787 4.59706 4.66131 4.71847 4.81419 4.91723 4.96419 5.00248 5.24998 5.26924 5.32957 5.56083 5.68464 6.08852 6.19698 6.26303 6.91657 6.93483 7.09197 7.20624 8.58694 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.002994 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.746839 B = 9349.532992 C =10369.573806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.130 3.870 3 H 0.053 0.947 4 C 0.110 3.890 5 N -0.606 5.606 6 C 0.059 3.941 7 C 0.531 3.469 8 O -0.559 6.559 9 C -0.106 4.106 10 S -0.180 6.180 11 C -0.528 4.528 12 H 0.062 0.938 13 C 0.047 3.953 14 N -0.916 5.916 15 Si 0.913 3.087 16 H -0.260 1.260 17 H -0.260 1.260 18 H -0.239 1.239 19 N -0.685 5.685 20 C 0.597 3.403 21 O -0.567 6.567 22 C -0.083 4.083 23 C 0.018 3.982 24 N -0.300 5.300 25 N -0.082 5.082 26 N -0.255 5.255 27 C 0.069 3.931 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.277 0.723 39 H 0.418 0.582 40 H 0.242 0.758 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.328 -11.340 -10.120 27.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.025 3.975 3 H 0.072 0.928 4 C -0.012 4.012 5 N -0.339 5.339 6 C -0.082 4.082 7 C 0.318 3.682 8 O -0.437 6.437 9 C -0.257 4.257 10 S 0.047 5.953 11 C -0.676 4.676 12 H 0.080 0.920 13 C -0.159 4.159 14 N -0.554 5.554 15 Si 0.735 3.265 16 H -0.185 1.185 17 H -0.184 1.184 18 H -0.163 1.163 19 N -0.338 5.338 20 C 0.381 3.619 21 O -0.446 6.446 22 C -0.218 4.218 23 C -0.143 4.143 24 N -0.162 5.162 25 N -0.063 5.063 26 N -0.052 5.052 27 C -0.071 4.071 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.156 0.844 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.257 0.743 40 H 0.258 0.742 41 H 0.131 0.869 42 H 0.124 0.876 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.644 -9.394 -10.813 27.644 hybrid contribution 1.169 -0.142 0.556 1.302 sum -22.475 -9.536 -10.257 26.481 Atomic orbital electron populations 1.22057 0.92176 1.04233 1.02642 1.21443 0.95686 0.96723 0.83653 0.92847 1.22040 0.78264 1.04123 0.96791 1.47752 1.06596 1.21415 1.58132 1.22303 1.00489 0.87484 0.97962 1.19988 0.88207 0.82512 0.77484 1.90690 1.74933 1.32634 1.45454 1.23283 0.94922 1.02329 1.05175 1.84730 1.02921 1.29725 1.77921 1.22439 0.90444 1.10317 1.44355 0.92016 1.25545 0.94078 1.00976 0.95262 1.70011 1.00586 1.38756 1.46090 0.85887 0.80452 0.79889 0.80276 1.18457 1.18386 1.16289 1.45536 1.65939 1.14682 1.07668 1.16783 0.76887 0.85718 0.82491 1.90824 1.52346 1.15351 1.86059 1.22084 1.15281 0.94906 0.89522 1.24580 1.00248 0.93773 0.95742 1.74888 1.17816 1.16347 1.07117 1.78285 1.17869 0.91129 1.18977 1.47948 1.40217 1.10811 1.06261 1.22784 1.06969 0.71873 1.05469 0.90477 0.93525 0.88941 0.89312 0.84431 0.91824 0.90969 0.85883 0.86785 0.87966 0.91350 0.74261 0.74166 0.86858 0.87642 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.48 71.98 0.68 -1.03 16 2 C 0.13 2.05 2.92 44.99 0.13 2.18 16 3 H 0.05 1.41 7.51 -2.38 -0.02 1.39 16 4 C 0.11 1.47 5.07 86.38 0.44 1.91 16 5 N -0.61 -11.54 2.73 -846.75 -2.31 -13.85 16 6 C 0.06 0.62 9.02 127.77 1.15 1.77 16 7 C 0.53 17.15 7.69 87.66 0.67 17.83 16 8 O -0.56 -22.76 15.44 -3.04 -0.05 -22.81 16 9 C -0.11 -3.92 4.71 71.24 0.34 -3.58 16 10 S -0.18 -9.06 18.55 -56.49 -1.05 -10.10 16 11 C -0.53 -30.69 10.04 67.95 0.68 -30.01 16 12 H 0.06 3.78 8.03 -2.91 -0.02 3.75 16 13 C 0.05 2.75 5.50 84.86 0.47 3.22 16 14 N -0.92 -55.80 13.97 21.65 0.30 -55.49 16 15 Si 0.91 45.11 27.74 68.60 1.90 47.01 16 16 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 17 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 19 N -0.69 -8.66 4.33 -446.00 -1.93 -10.59 16 20 C 0.60 11.63 7.76 86.61 0.67 12.30 16 21 O -0.57 -15.50 14.46 -4.08 -0.06 -15.56 16 22 C -0.08 -1.50 6.98 40.41 0.28 -1.22 16 23 C 0.02 0.26 11.54 84.18 0.97 1.23 16 24 N -0.30 -6.50 12.35 -57.51 -0.71 -7.21 16 25 N -0.08 -1.90 13.14 37.02 0.49 -1.41 16 26 N -0.26 -5.14 3.79 -356.77 -1.35 -6.50 16 27 C 0.07 1.02 11.00 127.77 1.40 2.43 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.09 1.57 7.42 -2.39 -0.02 1.55 16 32 H 0.14 0.44 7.89 -2.39 -0.02 0.42 16 33 H 0.06 0.60 7.39 -2.38 -0.02 0.58 16 34 H 0.07 0.96 6.44 -2.39 -0.02 0.94 16 35 H 0.12 0.14 7.89 -2.39 -0.02 0.12 16 36 H 0.11 3.80 7.40 -2.39 -0.02 3.78 16 37 H 0.10 3.61 8.11 -2.39 -0.02 3.59 16 38 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.42 2.04 6.15 -92.71 -0.57 1.47 16 40 H 0.24 0.73 7.60 -2.91 -0.02 0.71 16 41 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.11 1.90 6.33 -2.39 -0.02 1.89 16 43 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -87.82 376.34 3.57 -84.25 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: 0.44 Total: 5.24 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 7.89 Total: 7.02 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -5.52 Total: -95.05 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.11 Total: -38.37 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.90 Total: 47.01 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.10 kcal Total: -87.82 3.57 -84.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001679908867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.624 kcal (2) G-P(sol) polarization free energy of solvation -87.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds