Wall clock time and date at job start Sat Apr 11 2020 06:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.47100 * 2 1 4 4 C 1.46896 * 110.99968 * 59.18911 * 3 2 1 5 5 C 1.53000 * 109.47191 * 66.04429 * 4 3 2 6 6 C 1.53003 * 109.47378 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.47015 * 180.02562 * 6 5 4 8 8 C 1.34771 * 119.99555 * 179.72920 * 7 6 5 9 9 O 1.21607 * 120.00507 * 359.97438 * 8 7 6 10 10 C 1.47452 * 120.00003 * 180.02562 * 8 7 6 11 11 C 1.37974 * 124.15561 * 180.02562 * 10 8 7 12 12 S 1.72108 * 104.03256 * 179.97438 * 11 10 8 13 13 N 1.56399 * 96.15175 * 359.97438 * 12 11 10 14 14 N 1.27422 * 109.87961 * 359.74386 * 13 12 11 15 15 C 1.46902 * 110.99863 * 295.23565 * 3 2 1 16 16 C 1.50695 * 109.47099 * 288.23977 * 15 3 2 17 17 O 1.21289 * 120.00169 * 354.29749 * 16 15 3 18 18 N 1.34780 * 119.99760 * 174.30441 * 16 15 3 19 19 C 1.37099 * 119.99885 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00093 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99970 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00002 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99725 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47521 * 60.00077 * 23 21 19 25 25 H 1.48509 * 109.46815 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47208 * 299.99316 * 23 21 19 27 27 H 1.08997 * 109.47056 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46610 * 299.98851 * 1 2 3 29 29 H 1.08994 * 109.47327 * 59.99253 * 1 2 3 30 30 H 1.09006 * 109.47046 * 240.00584 * 2 1 3 31 31 H 1.08994 * 109.47338 * 119.99958 * 2 1 3 32 32 H 1.09006 * 109.46985 * 306.04734 * 4 3 2 33 33 H 1.09003 * 109.47270 * 186.04844 * 4 3 2 34 34 H 1.09006 * 109.46907 * 60.00257 * 5 4 3 35 35 H 1.09003 * 109.47352 * 300.00364 * 5 4 3 36 36 H 1.09000 * 109.46363 * 60.00451 * 6 5 4 37 37 H 1.09000 * 109.46873 * 300.00323 * 6 5 4 38 38 H 0.96992 * 119.99923 * 359.97438 * 7 6 5 39 39 H 1.08002 * 127.98653 * 359.94867 * 11 10 8 40 40 H 1.09007 * 109.46793 * 48.24013 * 15 3 2 41 41 H 1.08997 * 109.47230 * 168.23787 * 15 3 2 42 42 H 0.96998 * 120.00546 * 359.97438 * 18 16 15 43 43 H 0.97003 * 119.99963 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5329 2.1155 1.1778 5 6 2.1477 1.5120 2.4423 6 6 1.6412 2.2732 3.6690 7 7 2.2304 1.6957 4.8797 8 6 1.9299 2.2122 6.0877 9 8 1.1700 3.1578 6.1728 10 6 2.5233 1.6314 7.3062 11 6 2.2753 2.0908 8.5833 12 16 3.2154 1.0573 9.5884 13 7 3.8067 0.1891 8.4297 14 7 3.3569 0.5973 7.3095 15 6 1.6439 2.0763 -1.2406 16 6 2.4637 1.5370 -2.3842 17 8 3.3513 0.7384 -2.1705 18 7 2.2108 1.9421 -3.6445 19 6 2.9570 1.4519 -4.6850 20 1 3.7478 0.7414 -4.4946 21 6 2.6959 1.8692 -5.9843 22 7 1.7333 2.7334 -6.2160 23 14 3.7122 1.2007 -7.4020 24 1 3.5657 -0.2758 -7.4631 25 1 3.2375 1.7979 -8.6761 26 1 5.1409 1.5483 -7.1939 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 0.4468 2.0388 1.2297 33 1 1.8197 3.1642 1.0992 34 1 3.2338 1.5888 2.3904 35 1 1.8609 0.4634 2.5209 36 1 0.5551 2.1968 3.7210 37 1 1.9284 3.3218 3.5901 38 1 2.8395 0.9440 4.8115 39 1 1.6387 2.9101 8.8831 40 1 0.5855 1.9107 -1.4424 41 1 1.8303 3.1447 -1.1320 42 1 1.5008 2.5806 -3.8155 43 1 1.5508 3.0244 -7.1232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689946421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:51 Heat of formation + Delta-G solvation = 6.671755 kcal Electronic energy + Delta-G solvation = -26035.704823 eV Core-core repulsion = 22050.985395 eV Total energy + Delta-G solvation = -3984.719428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56626 -39.67230 -38.89027 -37.19244 -35.53697 -33.82689 -32.81215 -31.80450 -31.20732 -30.04500 -27.93411 -27.07499 -25.40637 -24.25072 -23.75571 -22.29698 -21.33225 -20.33402 -19.39092 -18.89984 -17.77463 -17.32609 -16.63888 -16.43842 -16.18721 -16.07930 -15.70395 -15.48124 -15.10984 -14.51877 -14.41751 -14.21910 -13.74538 -13.50556 -13.23313 -13.13780 -13.00542 -12.61207 -12.27305 -12.09610 -11.90797 -11.83384 -11.55104 -11.44304 -11.16911 -11.04433 -10.91880 -10.81693 -10.62903 -10.62299 -10.46437 -10.41927 -10.31353 -10.17544 -9.46300 -9.43325 -8.41973 -7.92601 -7.79695 -6.38115 -3.78745 -0.47668 0.37569 0.93928 0.99667 2.66454 2.69685 3.22348 3.27641 3.31677 3.32576 3.95822 3.98504 4.15434 4.26182 4.39294 4.76411 4.80059 4.91569 5.04462 5.11155 5.25580 5.29838 5.40130 5.46504 5.49854 5.57890 5.67084 5.73386 5.89879 5.92277 6.02142 6.06529 6.16720 6.29441 6.35599 6.55167 6.83753 7.13329 7.30144 7.41254 7.58237 7.66642 8.10353 8.66559 9.22292 9.59281 10.11816 10.79680 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.030237 B = 0.001547 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.792100 B =18094.756893 C =18383.653347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.049 3.951 3 N -0.511 5.511 4 C 0.054 3.946 5 C -0.129 4.129 6 C 0.119 3.881 7 N -0.706 5.706 8 C 0.603 3.397 9 O -0.526 6.526 10 C -0.023 4.023 11 C -0.237 4.237 12 S 0.464 5.536 13 N -0.288 5.288 14 N -0.210 5.210 15 C 0.041 3.959 16 C 0.445 3.555 17 O -0.576 6.576 18 N -0.567 5.567 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.412 0.588 39 H 0.209 0.791 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.391 0.609 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 -0.291 30.635 30.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.079 4.079 3 N -0.234 5.234 4 C -0.075 4.075 5 C -0.167 4.167 6 C -0.004 4.004 7 N -0.357 5.357 8 C 0.384 3.616 9 O -0.401 6.401 10 C -0.170 4.170 11 C -0.394 4.394 12 S 0.600 5.400 13 N -0.268 5.268 14 N -0.081 5.081 15 C -0.090 4.090 16 C 0.230 3.770 17 O -0.459 6.459 18 N -0.204 5.204 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.248 0.752 39 H 0.226 0.774 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.224 0.776 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.630 -1.432 31.322 31.397 hybrid contribution -1.523 0.844 -1.809 2.511 sum -3.153 -0.588 29.513 29.686 Atomic orbital electron populations 1.22466 0.99080 1.02150 1.01671 1.22220 0.91769 0.90163 1.03718 1.61756 1.59193 1.02001 1.00413 1.22028 0.97399 0.98257 0.89785 1.21785 1.02536 1.00090 0.92280 1.21472 0.98358 0.98160 0.82422 1.45853 1.48388 1.36016 1.05447 1.16620 0.80845 0.82611 0.81513 1.90858 1.35801 1.27225 1.86216 1.22697 1.01347 0.96793 0.96177 1.28915 1.06637 1.07670 0.96149 1.81618 1.25467 1.13730 1.19172 1.78669 1.24051 1.24830 0.99267 1.71546 1.09021 1.10566 1.16939 1.21919 0.97931 0.98864 0.90269 1.19768 0.87415 0.86251 0.83517 1.90510 1.34338 1.37117 1.83974 1.41870 1.32916 1.40741 1.04906 1.19642 1.14431 1.23792 0.84911 0.88026 1.25241 0.97234 0.96759 0.98725 1.69605 1.30607 1.32082 1.22183 0.85933 0.79750 0.78995 0.79614 1.19979 1.21030 1.19935 0.92285 0.92768 0.92322 0.89085 0.91101 0.94214 0.90617 0.89931 0.90903 0.90995 0.90712 0.75157 0.77360 0.92951 0.89516 0.77574 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.49 9.27 37.16 0.34 -2.15 16 2 C 0.05 0.75 5.52 -3.82 -0.02 0.72 16 3 N -0.51 -8.08 4.31 -236.06 -1.02 -9.09 16 4 C 0.05 0.63 4.69 -3.83 -0.02 0.61 16 5 C -0.13 -1.26 5.25 -26.73 -0.14 -1.40 16 6 C 0.12 1.08 5.67 -4.04 -0.02 1.06 16 7 N -0.71 -6.46 5.55 -61.37 -0.34 -6.80 16 8 C 0.60 6.27 7.81 -12.51 -0.10 6.17 16 9 O -0.53 -6.76 16.80 5.27 0.09 -6.67 16 10 C -0.02 -0.20 6.87 -83.78 -0.58 -0.78 16 11 C -0.24 -1.38 11.21 30.64 0.34 -1.04 16 12 S 0.46 2.07 23.38 -107.50 -2.51 -0.45 16 13 N -0.29 -2.46 12.49 60.35 0.75 -1.70 16 14 N -0.21 -2.01 11.24 32.74 0.37 -1.64 16 15 C 0.04 0.73 5.34 -4.98 -0.03 0.70 16 16 C 0.45 10.46 7.36 -10.99 -0.08 10.38 16 17 O -0.58 -15.54 14.70 5.55 0.08 -15.46 16 18 N -0.57 -14.37 5.29 -10.96 -0.06 -14.43 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.64 13.05 55.50 0.72 -23.91 16 23 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.60 6.26 -51.93 -0.33 0.28 16 29 H 0.06 0.81 6.29 -51.93 -0.33 0.49 16 30 H 0.09 1.72 6.54 -51.93 -0.34 1.38 16 31 H 0.07 0.95 6.51 -51.93 -0.34 0.61 16 32 H 0.04 0.43 5.98 -51.93 -0.31 0.12 16 33 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.70 6.57 -51.93 -0.34 0.36 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.41 3.37 8.06 -40.82 -0.33 3.04 16 39 H 0.21 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.05 0.85 5.97 -51.92 -0.31 0.54 16 41 H 0.09 1.38 7.81 -51.93 -0.41 0.98 16 42 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 43 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 373.69 15.07 5.63 5.63 Total: -1.00 -34.12 373.69 -7.22 -41.34 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.38 Total: 10.73 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -0.54 Total: 6.30 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.43 Total: -57.58 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.17 Total: -22.13 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.51 Total: -0.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.12 -7.22 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689946421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.014 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds