Wall clock time and date at job start Sat Apr 11 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.47100 * 2 1 4 4 C 1.46896 * 110.99968 * 59.18911 * 3 2 1 5 5 C 1.53000 * 109.47191 * 66.04429 * 4 3 2 6 6 C 1.53003 * 109.47378 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.47015 * 180.02562 * 6 5 4 8 8 C 1.34771 * 119.99555 * 179.72920 * 7 6 5 9 9 O 1.21607 * 120.00507 * 359.97438 * 8 7 6 10 10 C 1.47452 * 120.00003 * 180.02562 * 8 7 6 11 11 C 1.37974 * 124.15561 * 180.02562 * 10 8 7 12 12 S 1.72108 * 104.03256 * 179.97438 * 11 10 8 13 13 N 1.56399 * 96.15175 * 359.97438 * 12 11 10 14 14 N 1.27422 * 109.87961 * 359.74386 * 13 12 11 15 15 C 1.46902 * 110.99863 * 295.23565 * 3 2 1 16 16 C 1.50695 * 109.47099 * 288.23977 * 15 3 2 17 17 O 1.21289 * 120.00169 * 354.29749 * 16 15 3 18 18 N 1.34780 * 119.99760 * 174.30441 * 16 15 3 19 19 C 1.37099 * 119.99885 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00093 * 359.97438 * 19 18 16 21 21 C 1.38951 * 119.99970 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00002 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99725 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47521 * 60.00077 * 23 21 19 25 25 H 1.48509 * 109.46815 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47208 * 299.99316 * 23 21 19 27 27 H 1.08997 * 109.47056 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46610 * 299.98851 * 1 2 3 29 29 H 1.08994 * 109.47327 * 59.99253 * 1 2 3 30 30 H 1.09006 * 109.47046 * 240.00584 * 2 1 3 31 31 H 1.08994 * 109.47338 * 119.99958 * 2 1 3 32 32 H 1.09006 * 109.46985 * 306.04734 * 4 3 2 33 33 H 1.09003 * 109.47270 * 186.04844 * 4 3 2 34 34 H 1.09006 * 109.46907 * 60.00257 * 5 4 3 35 35 H 1.09003 * 109.47352 * 300.00364 * 5 4 3 36 36 H 1.09000 * 109.46363 * 60.00451 * 6 5 4 37 37 H 1.09000 * 109.46873 * 300.00323 * 6 5 4 38 38 H 0.96992 * 119.99923 * 359.97438 * 7 6 5 39 39 H 1.08002 * 127.98653 * 359.94867 * 11 10 8 40 40 H 1.09007 * 109.46793 * 48.24013 * 15 3 2 41 41 H 1.08997 * 109.47230 * 168.23787 * 15 3 2 42 42 H 0.96998 * 120.00546 * 359.97438 * 18 16 15 43 43 H 0.97003 * 119.99963 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.5329 2.1155 1.1778 5 6 2.1477 1.5120 2.4423 6 6 1.6412 2.2732 3.6690 7 7 2.2304 1.6957 4.8797 8 6 1.9299 2.2122 6.0877 9 8 1.1700 3.1578 6.1728 10 6 2.5233 1.6314 7.3062 11 6 2.2753 2.0908 8.5833 12 16 3.2154 1.0573 9.5884 13 7 3.8067 0.1891 8.4297 14 7 3.3569 0.5973 7.3095 15 6 1.6439 2.0763 -1.2406 16 6 2.4637 1.5370 -2.3842 17 8 3.3513 0.7384 -2.1705 18 7 2.2108 1.9421 -3.6445 19 6 2.9570 1.4519 -4.6850 20 1 3.7478 0.7414 -4.4946 21 6 2.6959 1.8692 -5.9843 22 7 1.7333 2.7334 -6.2160 23 14 3.7122 1.2007 -7.4020 24 1 3.5657 -0.2758 -7.4631 25 1 3.2375 1.7979 -8.6761 26 1 5.1409 1.5483 -7.1939 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 0.4468 2.0388 1.2297 33 1 1.8197 3.1642 1.0992 34 1 3.2338 1.5888 2.3904 35 1 1.8609 0.4634 2.5209 36 1 0.5551 2.1968 3.7210 37 1 1.9284 3.3218 3.5901 38 1 2.8395 0.9440 4.8115 39 1 1.6387 2.9101 8.8831 40 1 0.5855 1.9107 -1.4424 41 1 1.8303 3.1447 -1.1320 42 1 1.5008 2.5806 -3.8155 43 1 1.5508 3.0244 -7.1232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689946421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:50 Heat of formation + Delta-G solvation = -21.134160 kcal Electronic energy + Delta-G solvation = -26036.910578 eV Core-core repulsion = 22050.985395 eV Total energy + Delta-G solvation = -3985.925183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.131 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -42.15289 -40.57033 -40.30469 -38.66308 -36.44218 -35.82693 -33.46756 -33.24313 -32.60750 -31.29328 -28.85542 -28.04508 -26.69085 -25.78602 -24.60327 -23.20883 -21.97364 -21.44104 -20.63750 -20.10154 -19.74926 -17.96346 -17.70846 -17.36240 -17.16700 -17.00408 -16.80236 -16.48727 -16.30352 -16.12187 -15.70632 -15.30502 -15.00858 -14.84609 -14.63116 -14.33604 -13.68253 -13.62600 -13.42433 -13.18207 -13.08947 -13.00904 -12.91882 -12.70475 -12.70144 -12.41080 -12.18720 -12.11562 -11.94076 -11.56922 -11.49599 -11.32301 -11.27755 -11.18734 -10.92014 -10.27613 -10.21040 -9.97256 -9.07326 -8.43972 -5.92406 -0.94821 -0.05353 0.29400 0.52602 1.40599 1.41857 1.52728 1.96959 1.98760 2.10744 2.30343 2.70945 2.84980 3.22932 3.47495 3.62649 3.82034 3.95212 4.00758 4.15583 4.26194 4.29946 4.34236 4.37306 4.49428 4.55817 4.60822 4.62399 4.68418 4.75972 5.01756 5.07205 5.18965 5.21152 5.28941 5.42021 5.44006 5.93513 6.13618 6.18747 6.29594 6.51580 6.64566 6.93651 7.16374 7.60964 8.17609 8.73206 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.030237 B = 0.001547 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.792100 B =18094.756893 C =18383.653347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.051 3.949 3 N -0.532 5.532 4 C 0.055 3.945 5 C -0.117 4.117 6 C 0.126 3.874 7 N -0.702 5.702 8 C 0.603 3.397 9 O -0.556 6.556 10 C -0.047 4.047 11 C -0.236 4.236 12 S 0.562 5.438 13 N -0.334 5.334 14 N -0.235 5.235 15 C 0.054 3.946 16 C 0.443 3.557 17 O -0.615 6.615 18 N -0.577 5.577 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.273 1.273 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.417 0.583 39 H 0.230 0.770 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.395 0.605 43 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.082 0.173 32.504 32.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.077 4.077 3 N -0.255 5.255 4 C -0.073 4.073 5 C -0.155 4.155 6 C 0.003 3.997 7 N -0.353 5.353 8 C 0.385 3.615 9 O -0.434 6.434 10 C -0.195 4.195 11 C -0.393 4.393 12 S 0.697 5.303 13 N -0.314 5.314 14 N -0.104 5.104 15 C -0.077 4.077 16 C 0.230 3.770 17 O -0.501 6.501 18 N -0.215 5.215 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.198 1.198 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.254 0.746 39 H 0.246 0.754 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.229 0.771 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.414 -0.974 33.196 33.298 hybrid contribution -1.261 0.695 -2.192 2.623 sum -3.675 -0.279 31.004 31.222 Atomic orbital electron populations 1.22374 0.96960 1.03010 1.02093 1.22119 0.93480 0.89772 1.02295 1.61684 1.60448 1.02497 1.00879 1.22113 0.98457 0.98227 0.88500 1.21639 1.01773 1.00305 0.91767 1.21370 0.98499 0.97828 0.82021 1.45848 1.48148 1.35928 1.05343 1.16818 0.80380 0.82177 0.82128 1.90831 1.37283 1.28570 1.86740 1.22575 1.02586 0.97767 0.96539 1.29298 1.06322 1.07975 0.95695 1.81245 1.22461 1.10773 1.15849 1.78335 1.25800 1.26993 1.00316 1.71574 1.09718 1.11183 1.17913 1.21770 0.97499 0.99610 0.88835 1.20859 0.86975 0.84910 0.84260 1.90479 1.36212 1.38686 1.84713 1.41944 1.33066 1.41195 1.05320 1.19611 1.15215 1.24823 0.86553 0.90448 1.26004 0.98113 0.96688 1.00474 1.69668 1.31200 1.32345 1.23013 0.85013 0.78183 0.78381 0.76888 1.19795 1.19497 1.19812 0.91324 0.90425 0.93595 0.93613 0.89431 0.92501 0.89887 0.90917 0.90446 0.90554 0.90927 0.74640 0.75367 0.91111 0.87461 0.77132 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.43 9.27 71.98 0.67 -3.76 16 2 C 0.05 1.53 5.52 86.30 0.48 2.01 16 3 N -0.53 -16.36 4.31 -900.77 -3.88 -20.24 16 4 C 0.05 1.17 4.69 86.30 0.41 1.57 16 5 C -0.12 -2.11 5.25 30.60 0.16 -1.95 16 6 C 0.13 2.12 5.67 86.38 0.49 2.61 16 7 N -0.70 -12.35 5.55 -466.34 -2.59 -14.93 16 8 C 0.60 12.17 7.81 86.67 0.68 12.85 16 9 O -0.56 -13.94 16.80 -4.05 -0.07 -14.01 16 10 C -0.05 -0.78 6.87 41.36 0.28 -0.50 16 11 C -0.24 -2.30 11.21 67.76 0.76 -1.55 16 12 S 0.56 3.70 23.38 -56.49 -1.32 2.37 16 13 N -0.33 -5.34 12.49 37.02 0.46 -4.88 16 14 N -0.23 -4.36 11.24 -50.35 -0.57 -4.93 16 15 C 0.05 1.86 5.34 85.55 0.46 2.31 16 16 C 0.44 21.28 7.36 87.65 0.65 21.92 16 17 O -0.62 -34.46 14.70 -3.06 -0.04 -34.50 16 18 N -0.58 -29.99 5.29 -306.99 -1.62 -31.61 16 19 C -0.33 -19.12 9.68 84.04 0.81 -18.30 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 22 N -0.92 -50.16 13.05 21.66 0.28 -49.88 16 23 Si 0.99 43.49 29.55 68.60 2.03 45.51 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.49 6.26 -2.39 -0.01 1.47 16 29 H 0.05 1.21 6.29 -2.39 -0.02 1.19 16 30 H 0.05 1.78 6.54 -2.38 -0.02 1.77 16 31 H 0.09 2.27 6.51 -2.39 -0.02 2.26 16 32 H 0.06 1.05 5.98 -2.38 -0.01 1.04 16 33 H 0.08 1.67 7.86 -2.39 -0.02 1.66 16 34 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.08 1.34 6.57 -2.39 -0.02 1.33 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.42 6.63 8.06 -92.71 -0.75 5.88 16 39 H 0.23 1.13 8.06 -2.91 -0.02 1.10 16 40 H 0.07 2.19 5.97 -2.38 -0.01 2.18 16 41 H 0.11 3.26 7.81 -2.39 -0.02 3.24 16 42 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 43 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -76.03 373.69 -1.41 -77.44 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.39 Total: 32.70 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 6.30 Total: 16.96 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -7.91 Total: -126.47 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -0.11 Total: -48.51 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.32 Total: 2.37 kcal Total: -76.03 -1.41 -77.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689946421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.304 kcal (2) G-P(sol) polarization free energy of solvation -76.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds