Wall clock time and date at job start Sat Apr 11 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47644 * 2 1 4 4 C 1.53006 * 109.47054 * 240.00387 * 2 1 3 5 5 N 1.46504 * 109.46883 * 185.00191 * 4 2 1 6 6 C 1.34775 * 119.99531 * 179.97438 * 5 4 2 7 7 O 1.21569 * 120.00225 * 359.97438 * 6 5 4 8 8 C 1.47690 * 119.99844 * 179.97438 * 6 5 4 9 9 C 1.39657 * 120.15983 * 359.72367 * 8 6 5 10 10 C 1.38067 * 119.85617 * 179.79046 * 9 8 6 11 11 F 1.35100 * 119.91603 * 180.23674 * 10 9 8 12 12 C 1.38655 * 120.16563 * 0.48559 * 10 9 8 13 13 C 1.38184 * 120.31346 * 359.74897 * 12 10 9 14 14 C 1.38309 * 120.14880 * 0.02562 * 13 12 10 15 15 F 1.35101 * 120.08793 * 179.97438 * 14 13 12 16 16 N 1.46897 * 109.47337 * 120.00023 * 2 1 3 17 17 C 1.46891 * 111.00245 * 275.00002 * 16 2 1 18 18 C 1.50709 * 109.47334 * 179.97438 * 17 16 2 19 19 O 1.21287 * 119.99677 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99837 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99416 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00398 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99489 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00242 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99751 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47211 * 59.99517 * 25 23 21 27 27 H 1.48498 * 109.47148 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46835 * 299.99332 * 25 23 21 29 29 H 1.09001 * 109.47018 * 59.99757 * 1 2 3 30 30 H 1.08995 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47069 * 299.99745 * 1 2 3 32 32 H 1.09001 * 109.47002 * 304.99688 * 4 2 1 33 33 H 1.08993 * 109.46955 * 65.00125 * 4 2 1 34 34 H 0.96992 * 119.99966 * 359.97438 * 5 4 2 35 35 H 1.08001 * 120.06701 * 0.02562 * 9 8 6 36 36 H 1.07995 * 119.84213 * 179.72206 * 12 10 9 37 37 H 1.07998 * 119.92598 * 179.97438 * 13 12 10 38 38 H 1.00901 * 110.99813 * 38.95842 * 16 2 1 39 39 H 1.08998 * 109.47096 * 299.99607 * 17 16 2 40 40 H 1.09001 * 109.47578 * 60.00032 * 17 16 2 41 41 H 0.96994 * 120.00673 * 0.02562 * 20 18 17 42 42 H 0.97003 * 119.99717 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.1730 -1.4291 -2.1908 7 8 3.5683 -1.8859 -3.1414 8 6 5.6449 -1.5346 -2.1319 9 6 6.3433 -1.0059 -1.0442 10 6 7.7190 -1.1119 -0.9935 11 9 8.3954 -0.6052 0.0604 12 6 8.4084 -1.7326 -2.0240 13 6 7.7248 -2.2539 -3.1059 14 6 6.3463 -2.1590 -3.1678 15 9 5.6792 -2.6686 -4.2263 16 7 2.0197 -0.6925 1.1994 17 6 2.0825 0.2225 2.3468 18 6 2.5875 -0.5220 3.5560 19 8 2.8679 -1.6988 3.4701 20 7 2.7284 0.1203 4.7324 21 6 3.1883 -0.5569 5.8322 22 1 3.4371 -1.6049 5.7560 23 6 3.3331 0.1052 7.0453 24 7 3.0297 1.3805 7.1382 25 14 3.9603 -0.8172 8.5437 26 1 5.3165 -1.3531 8.2632 27 1 4.0242 0.1079 9.7036 28 1 3.0392 -1.9396 8.8553 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7198 -1.2953 33 1 1.7517 -0.1582 -2.1370 34 1 3.9824 -0.4622 -0.4320 35 1 5.8081 -0.5186 -0.2427 36 1 9.4848 -1.8087 -1.9812 37 1 8.2681 -2.7357 -3.9053 38 1 1.4496 -1.4980 1.4099 39 1 2.7589 1.0461 2.1182 40 1 1.0872 0.6162 2.5526 41 1 2.5045 1.0616 4.8011 42 1 3.1312 1.8427 7.9850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690584050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:59 Heat of formation + Delta-G solvation = -134.669737 kcal Electronic energy + Delta-G solvation = -28841.333875 eV Core-core repulsion = 24264.352283 eV Total energy + Delta-G solvation = -4576.981592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.17268 -49.09375 -40.20255 -38.67111 -38.26914 -36.93971 -34.28102 -33.84771 -32.09650 -31.30761 -30.60968 -30.31290 -26.77789 -26.29921 -24.44474 -23.94041 -22.90065 -21.10216 -20.75786 -19.37693 -18.57500 -17.94972 -17.70265 -17.48958 -16.51079 -16.26287 -16.15378 -15.89507 -15.58151 -15.43841 -15.10804 -14.88225 -14.59684 -14.54854 -14.51404 -13.98894 -13.88574 -13.51879 -13.29207 -13.09184 -12.83021 -12.69621 -12.59923 -12.23370 -12.14426 -11.82964 -11.74809 -11.62633 -11.46277 -11.07367 -11.03999 -10.47546 -10.25586 -10.08944 -9.72645 -9.54498 -9.11382 -8.89365 -8.56662 -8.18445 -8.01235 -6.46250 -3.87268 0.21991 0.59684 2.47732 2.96148 3.17111 3.23361 3.27558 3.29708 3.76356 3.78960 3.84654 3.99925 4.13025 4.23617 4.33934 4.59678 4.67551 4.73532 4.92294 5.06136 5.14303 5.15931 5.22121 5.39701 5.42940 5.48351 5.55722 5.61036 5.63099 5.65312 5.69797 5.81847 5.93292 5.99267 6.19968 6.31108 6.35866 7.06436 7.42717 7.50803 7.51832 8.01066 8.08363 8.55834 9.13181 9.48936 9.99990 10.71247 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010374 B = 0.002796 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.527101 B =10011.564185 C =12173.262954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.085 0.915 4 C 0.134 3.866 5 N -0.703 5.703 6 C 0.556 3.444 7 O -0.531 6.531 8 C -0.141 4.141 9 C -0.089 4.089 10 C 0.086 3.914 11 F -0.128 7.128 12 C -0.101 4.101 13 C -0.137 4.137 14 C 0.147 3.853 15 F -0.111 7.111 16 N -0.665 5.665 17 C 0.049 3.951 18 C 0.438 3.562 19 O -0.583 6.583 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.024 3.976 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.409 0.591 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.354 0.646 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.392 0.608 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 0.428 -19.115 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.010 3.990 5 N -0.354 5.354 6 C 0.342 3.658 7 O -0.408 6.408 8 C -0.145 4.145 9 C -0.109 4.109 10 C 0.067 3.933 11 F -0.107 7.107 12 C -0.120 4.120 13 C -0.156 4.156 14 C 0.126 3.874 15 F -0.089 7.089 16 N -0.298 5.298 17 C -0.084 4.084 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.198 5.198 21 C -0.431 4.431 22 H 0.120 0.880 23 C -0.178 4.178 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.198 1.198 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.246 0.754 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.225 0.775 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.319 -0.471 -19.812 20.519 hybrid contribution -0.540 0.532 1.620 1.789 sum 4.779 0.061 -18.192 18.809 Atomic orbital electron populations 1.22426 0.96054 1.02814 1.02694 1.21868 0.93553 0.98326 0.90657 0.89682 1.21395 0.79393 1.01280 0.96927 1.45688 1.08094 1.58658 1.23000 1.17820 0.86032 0.78895 0.83066 1.90836 1.69275 1.47544 1.33189 1.19921 0.94563 1.04168 0.95861 1.21314 0.92823 0.98722 0.98004 1.17498 0.89831 0.99620 0.86397 1.91580 1.79782 1.84869 1.54420 1.21198 1.01566 0.96983 0.92257 1.20989 0.91813 1.02582 1.00181 1.17674 0.89787 0.95286 0.84610 1.91612 1.80537 1.83745 1.53024 1.60186 1.57753 1.09267 1.02587 1.21727 1.00132 0.95601 0.90899 1.19790 0.85393 0.88264 0.84200 1.90537 1.55350 1.16220 1.84594 1.41856 1.57616 1.12429 1.07948 1.19652 1.40195 0.96432 0.86775 0.87965 1.25259 0.97541 0.95763 0.99255 1.69599 1.48482 1.08847 1.27331 0.85925 0.79504 0.78843 0.80014 1.19830 1.20956 1.19897 0.91784 0.91908 0.91854 0.91170 0.91023 0.75352 0.82904 0.83165 0.82989 0.82525 0.89645 0.93623 0.77483 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.16 37.16 0.34 -1.29 16 2 C 0.07 0.69 2.75 -67.71 -0.19 0.50 16 3 H 0.08 0.81 7.80 -51.93 -0.40 0.40 16 4 C 0.13 1.48 5.37 -4.04 -0.02 1.45 16 5 N -0.70 -8.37 5.34 -61.30 -0.33 -8.70 16 6 C 0.56 7.61 7.77 -12.40 -0.10 7.51 16 7 O -0.53 -8.88 15.34 5.30 0.08 -8.80 16 8 C -0.14 -1.67 5.88 -104.92 -0.62 -2.28 16 9 C -0.09 -0.93 9.51 -39.11 -0.37 -1.31 16 10 C 0.09 0.86 7.29 -39.49 -0.29 0.57 16 11 F -0.13 -1.45 17.26 2.25 0.04 -1.41 16 12 C -0.10 -0.78 10.01 -39.45 -0.40 -1.17 16 13 C -0.14 -1.09 10.01 -39.58 -0.40 -1.49 16 14 C 0.15 1.64 7.28 -38.97 -0.28 1.36 16 15 F -0.11 -1.47 15.55 2.25 0.04 -1.43 16 16 N -0.67 -9.21 5.32 -107.99 -0.57 -9.78 16 17 C 0.05 0.76 5.97 -4.98 -0.03 0.73 16 18 C 0.44 9.71 7.82 -10.98 -0.09 9.62 16 19 O -0.58 -15.07 15.78 5.55 0.09 -14.98 16 20 N -0.56 -13.65 5.29 -10.96 -0.06 -13.71 16 21 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 22 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 25 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.41 4.61 6.17 -40.82 -0.25 4.36 16 35 H 0.15 1.49 6.41 -52.49 -0.34 1.16 16 36 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.35 5.36 8.17 -39.29 -0.32 5.04 16 39 H 0.09 1.19 8.05 -51.93 -0.42 0.77 16 40 H 0.05 0.65 7.44 -51.93 -0.39 0.26 16 41 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 42 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -32.79 371.32 -6.97 -39.76 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -4.87 Total: 14.64 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -2.67 Total: 6.41 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.23 Total: -55.46 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: 0.17 Total: -23.78 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.07 Total: -2.84 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.79 -6.97 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690584050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.912 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds