Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47644 * 2 1 4 4 C 1.53006 * 109.47054 * 240.00387 * 2 1 3 5 5 N 1.46504 * 109.46883 * 185.00191 * 4 2 1 6 6 C 1.34775 * 119.99531 * 179.97438 * 5 4 2 7 7 O 1.21569 * 120.00225 * 359.97438 * 6 5 4 8 8 C 1.47690 * 119.99844 * 179.97438 * 6 5 4 9 9 C 1.39657 * 120.15983 * 359.72367 * 8 6 5 10 10 C 1.38067 * 119.85617 * 179.79046 * 9 8 6 11 11 F 1.35100 * 119.91603 * 180.23674 * 10 9 8 12 12 C 1.38655 * 120.16563 * 0.48559 * 10 9 8 13 13 C 1.38184 * 120.31346 * 359.74897 * 12 10 9 14 14 C 1.38309 * 120.14880 * 0.02562 * 13 12 10 15 15 F 1.35101 * 120.08793 * 179.97438 * 14 13 12 16 16 N 1.46897 * 109.47337 * 120.00023 * 2 1 3 17 17 C 1.46891 * 111.00245 * 275.00002 * 16 2 1 18 18 C 1.50709 * 109.47334 * 179.97438 * 17 16 2 19 19 O 1.21287 * 119.99677 * 0.02562 * 18 17 16 20 20 N 1.34774 * 119.99837 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99416 * 180.02562 * 20 18 17 22 22 H 1.07994 * 120.00398 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99489 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00242 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99751 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47211 * 59.99517 * 25 23 21 27 27 H 1.48498 * 109.47148 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.46835 * 299.99332 * 25 23 21 29 29 H 1.09001 * 109.47018 * 59.99757 * 1 2 3 30 30 H 1.08995 * 109.47070 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47069 * 299.99745 * 1 2 3 32 32 H 1.09001 * 109.47002 * 304.99688 * 4 2 1 33 33 H 1.08993 * 109.46955 * 65.00125 * 4 2 1 34 34 H 0.96992 * 119.99966 * 359.97438 * 5 4 2 35 35 H 1.08001 * 120.06701 * 0.02562 * 9 8 6 36 36 H 1.07995 * 119.84213 * 179.72206 * 12 10 9 37 37 H 1.07998 * 119.92598 * 179.97438 * 13 12 10 38 38 H 1.00901 * 110.99813 * 38.95842 * 16 2 1 39 39 H 1.08998 * 109.47096 * 299.99607 * 17 16 2 40 40 H 1.09001 * 109.47578 * 60.00032 * 17 16 2 41 41 H 0.96994 * 120.00673 * 0.02562 * 20 18 17 42 42 H 0.97003 * 119.99717 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8264 -1.1906 6 6 4.1730 -1.4291 -2.1908 7 8 3.5683 -1.8859 -3.1414 8 6 5.6449 -1.5346 -2.1319 9 6 6.3433 -1.0059 -1.0442 10 6 7.7190 -1.1119 -0.9935 11 9 8.3954 -0.6052 0.0604 12 6 8.4084 -1.7326 -2.0240 13 6 7.7248 -2.2539 -3.1059 14 6 6.3463 -2.1590 -3.1678 15 9 5.6792 -2.6686 -4.2263 16 7 2.0197 -0.6925 1.1994 17 6 2.0825 0.2225 2.3468 18 6 2.5875 -0.5220 3.5560 19 8 2.8679 -1.6988 3.4701 20 7 2.7284 0.1203 4.7324 21 6 3.1883 -0.5569 5.8322 22 1 3.4371 -1.6049 5.7560 23 6 3.3331 0.1052 7.0453 24 7 3.0297 1.3805 7.1382 25 14 3.9603 -0.8172 8.5437 26 1 5.3165 -1.3531 8.2632 27 1 4.0242 0.1079 9.7036 28 1 3.0392 -1.9396 8.8553 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6054 -1.7198 -1.2953 33 1 1.7517 -0.1582 -2.1370 34 1 3.9824 -0.4622 -0.4320 35 1 5.8081 -0.5186 -0.2427 36 1 9.4848 -1.8087 -1.9812 37 1 8.2681 -2.7357 -3.9053 38 1 1.4496 -1.4980 1.4099 39 1 2.7589 1.0461 2.1182 40 1 1.0872 0.6162 2.5526 41 1 2.5045 1.0616 4.8011 42 1 3.1312 1.8427 7.9850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690584050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = -158.725209 kcal Electronic energy + Delta-G solvation = -28842.376999 eV Core-core repulsion = 24264.352283 eV Total energy + Delta-G solvation = -4578.024716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.00519 -49.99854 -41.17294 -40.18525 -39.28016 -38.11349 -35.97017 -35.18560 -33.28924 -32.91010 -31.66257 -31.09755 -27.95839 -27.55462 -25.72891 -25.12252 -23.70291 -22.03995 -21.68984 -21.09876 -19.91752 -19.45854 -18.54199 -18.35330 -17.79053 -17.26235 -17.14634 -17.01239 -16.61917 -16.48690 -16.41896 -16.28257 -15.85419 -15.70106 -15.41477 -15.40597 -15.07552 -14.62221 -14.39079 -14.15999 -13.77125 -13.67826 -13.65047 -13.43866 -13.40187 -13.07129 -12.96549 -12.77623 -12.58492 -12.53842 -12.41588 -12.12605 -11.90912 -11.48675 -11.14777 -10.50386 -10.32704 -10.08742 -9.99716 -9.71540 -9.35868 -8.45757 -5.93896 -0.57918 -0.16380 1.39988 1.42308 1.52467 1.59264 2.03793 2.08339 2.29485 2.41625 2.88876 2.98163 3.01531 3.22241 3.40294 3.49954 3.58723 3.82485 3.86138 3.99339 4.10595 4.31610 4.35301 4.40134 4.50159 4.61751 4.64083 4.67324 4.76009 4.81019 4.85452 4.88666 4.93302 4.99222 5.24840 5.38461 5.42048 5.58564 5.89076 6.09974 6.35140 6.43503 6.61892 7.07536 7.14529 7.59077 8.14531 8.71263 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010374 B = 0.002796 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2698.527101 B =10011.564185 C =12173.262954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 H 0.103 0.897 4 C 0.134 3.866 5 N -0.696 5.696 6 C 0.551 3.449 7 O -0.570 6.570 8 C -0.159 4.159 9 C -0.092 4.092 10 C 0.074 3.926 11 F -0.137 7.137 12 C -0.082 4.082 13 C -0.120 4.120 14 C 0.127 3.873 15 F -0.128 7.128 16 N -0.675 5.675 17 C 0.065 3.935 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.988 3.012 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.413 0.587 35 H 0.154 0.846 36 H 0.186 0.814 37 H 0.186 0.814 38 H 0.346 0.654 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.396 0.604 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.943 1.210 -19.541 20.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.034 4.034 3 H 0.121 0.879 4 C 0.010 3.990 5 N -0.347 5.347 6 C 0.338 3.662 7 O -0.451 6.451 8 C -0.163 4.163 9 C -0.112 4.112 10 C 0.055 3.945 11 F -0.116 7.116 12 C -0.100 4.100 13 C -0.139 4.139 14 C 0.107 3.893 15 F -0.106 7.106 16 N -0.308 5.308 17 C -0.067 4.067 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.812 3.188 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.250 0.750 35 H 0.171 0.829 36 H 0.204 0.796 37 H 0.204 0.796 38 H 0.165 0.835 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.230 0.770 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.324 0.352 -20.233 21.202 hybrid contribution -0.829 0.271 1.689 1.901 sum 5.495 0.623 -18.544 19.351 Atomic orbital electron populations 1.22376 0.94668 1.02870 1.03605 1.21880 0.94549 0.98508 0.88460 0.87930 1.21463 0.78836 1.00883 0.97810 1.45721 1.08535 1.57877 1.22600 1.18164 0.86950 0.78341 0.82719 1.90803 1.70209 1.49408 1.34642 1.19833 0.93609 1.05887 0.97011 1.21289 0.93380 0.98845 0.97676 1.17718 0.89696 1.00253 0.86878 1.91560 1.79835 1.85150 1.55044 1.21573 1.03165 0.94633 0.90663 1.21327 0.90315 1.01360 1.00852 1.18067 0.91110 0.95924 0.84217 1.91567 1.81160 1.84125 1.53765 1.60156 1.58515 1.09148 1.02959 1.21585 1.01421 0.95268 0.88414 1.20934 0.83351 0.88007 0.85189 1.90510 1.56590 1.18382 1.85466 1.41920 1.58348 1.12593 1.08197 1.19602 1.42161 0.95906 0.88611 0.90432 1.25973 0.97275 0.96573 1.01269 1.69655 1.48662 1.09605 1.28150 0.85053 0.78753 0.77877 0.77077 1.19761 1.19568 1.19815 0.89883 0.92364 0.91852 0.92533 0.89834 0.74950 0.82873 0.79645 0.79638 0.83503 0.87219 0.91370 0.76965 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 9.16 71.98 0.66 -2.16 16 2 C 0.08 1.44 2.75 44.92 0.12 1.56 16 3 H 0.10 1.64 7.80 -2.39 -0.02 1.62 16 4 C 0.13 2.86 5.37 86.38 0.46 3.33 16 5 N -0.70 -16.58 5.34 -466.11 -2.49 -19.07 16 6 C 0.55 15.44 7.77 86.74 0.67 16.11 16 7 O -0.57 -19.71 15.34 -3.93 -0.06 -19.77 16 8 C -0.16 -3.79 5.88 -20.06 -0.12 -3.91 16 9 C -0.09 -1.91 9.51 22.57 0.21 -1.70 16 10 C 0.07 1.37 7.29 22.33 0.16 1.53 16 11 F -0.14 -2.95 17.26 44.97 0.78 -2.17 16 12 C -0.08 -1.02 10.01 22.36 0.22 -0.80 16 13 C -0.12 -1.61 10.01 22.27 0.22 -1.39 16 14 C 0.13 2.78 7.28 22.67 0.17 2.95 16 15 F -0.13 -3.41 15.55 44.97 0.70 -2.71 16 16 N -0.68 -18.04 5.32 -495.58 -2.63 -20.67 16 17 C 0.07 1.93 5.97 85.56 0.51 2.44 16 18 C 0.44 19.44 7.82 87.66 0.69 20.12 16 19 O -0.62 -32.91 15.78 -3.05 -0.05 -32.95 16 20 N -0.57 -28.09 5.29 -306.98 -1.62 -29.71 16 21 C -0.33 -18.46 9.68 84.04 0.81 -17.65 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 24 N -0.92 -48.59 13.05 21.66 0.28 -48.31 16 25 Si 0.99 42.29 29.55 68.60 2.03 44.31 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 31 H 0.06 1.04 7.45 -2.39 -0.02 1.03 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.41 9.19 6.17 -92.71 -0.57 8.62 16 35 H 0.15 3.02 6.41 -2.91 -0.02 3.00 16 36 H 0.19 1.03 8.06 -2.91 -0.02 1.00 16 37 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.35 10.38 8.17 -89.69 -0.73 9.65 16 39 H 0.11 2.78 8.05 -2.39 -0.02 2.76 16 40 H 0.07 1.77 7.44 -2.39 -0.02 1.75 16 41 H 0.40 18.38 7.90 -92.71 -0.73 17.65 16 42 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -73.11 371.32 1.28 -71.84 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: -0.92 Total: 38.88 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 5.27 Total: 20.33 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -6.46 Total: -117.76 kcal Atomic # 8 Polarization: -52.62 SS G_CDS: -0.11 Total: -52.73 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 1.48 Total: -4.88 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -73.11 1.28 -71.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690584050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.889 kcal (2) G-P(sol) polarization free energy of solvation -73.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds