Wall clock time and date at job start Sat Apr 11 2020 06:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47150 * 2 1 4 4 C 1.52995 * 109.47094 * 120.00592 * 2 1 3 5 5 N 1.46501 * 109.47069 * 175.00015 * 4 2 1 6 6 C 1.34780 * 120.00108 * 179.97438 * 5 4 2 7 7 O 1.21568 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.47698 * 119.99868 * 179.97438 * 6 5 4 9 9 C 1.39652 * 120.15803 * 0.02574 * 8 6 5 10 10 C 1.38068 * 119.85293 * 179.97438 * 9 8 6 11 11 F 1.35102 * 119.91627 * 179.97438 * 10 9 8 12 12 C 1.38657 * 120.16432 * 0.02562 * 10 9 8 13 13 C 1.38178 * 120.31589 * 359.96067 * 12 10 9 14 14 C 1.38317 * 120.14691 * 0.04138 * 13 12 10 15 15 F 1.35105 * 120.08383 * 180.25353 * 14 13 12 16 16 N 1.46900 * 109.46978 * 240.00278 * 2 1 3 17 17 C 1.46901 * 111.00066 * 85.00131 * 16 2 1 18 18 C 1.50705 * 109.47263 * 179.97438 * 17 16 2 19 19 O 1.21294 * 119.99875 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99810 * 179.97438 * 18 17 16 21 21 C 1.37090 * 119.99754 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00096 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00146 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99865 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00243 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47260 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47302 * 119.99951 * 25 23 21 28 28 H 1.48508 * 109.47244 * 240.00019 * 25 23 21 29 29 H 1.08997 * 109.46999 * 59.99783 * 1 2 3 30 30 H 1.08998 * 109.47150 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47011 * 299.99345 * 1 2 3 32 32 H 1.08995 * 109.47558 * 54.99612 * 4 2 1 33 33 H 1.09002 * 109.47244 * 294.99620 * 4 2 1 34 34 H 0.97000 * 120.00145 * 359.97438 * 5 4 2 35 35 H 1.08004 * 120.07395 * 359.95155 * 9 8 6 36 36 H 1.08001 * 119.83756 * 179.97438 * 12 10 9 37 37 H 1.07999 * 119.92979 * 180.02562 * 13 12 10 38 38 H 1.00900 * 111.00634 * 321.04539 * 16 2 1 39 39 H 1.08999 * 109.46967 * 299.99893 * 17 16 2 40 40 H 1.08998 * 109.47384 * 59.99967 * 17 16 2 41 41 H 0.97003 * 119.99736 * 0.02562 * 20 18 17 42 42 H 0.96997 * 120.00238 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8265 1.1904 6 6 4.1731 -1.4285 2.1910 7 8 3.5686 -1.8847 3.1420 8 6 5.6451 -1.5349 2.1315 9 6 6.3427 -1.0125 1.0404 10 6 7.7187 -1.1150 0.9915 11 9 8.3949 -0.6105 -0.0638 12 6 8.4082 -1.7354 2.0222 13 6 7.7249 -2.2545 3.1052 14 6 6.3464 -2.1590 3.1674 15 9 5.6800 -2.6624 4.2294 16 7 2.0196 -0.6924 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5885 -0.5214 -3.5558 19 8 2.8696 -1.6981 -3.4699 20 7 2.7286 0.1209 -4.7325 21 6 3.1884 -0.5561 -5.8323 22 1 3.4380 -1.6041 -5.7560 23 6 3.3334 0.1060 -7.0453 24 7 3.0303 1.3813 -7.1380 25 14 3.9593 -0.8166 -8.5440 26 1 4.2267 -2.2309 -8.1788 27 1 2.9351 -0.7685 -9.6183 28 1 5.2131 -0.1839 -9.0269 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6054 -1.7198 1.2950 33 1 1.7517 -0.1585 2.1369 34 1 3.9824 -0.4628 0.4315 35 1 5.8071 -0.5297 0.2363 36 1 9.4845 -1.8130 1.9783 37 1 8.2682 -2.7360 3.9047 38 1 1.4496 -1.4979 -1.4102 39 1 1.0870 0.6164 -2.5525 40 1 2.7588 1.0463 -2.1182 41 1 2.5041 1.0621 -4.8010 42 1 3.1311 1.8435 -7.9848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690584051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:03 Heat of formation + Delta-G solvation = -134.769794 kcal Electronic energy + Delta-G solvation = -28842.013805 eV Core-core repulsion = 24265.027874 eV Total energy + Delta-G solvation = -4576.985931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.17230 -49.09350 -40.20286 -38.67228 -38.27022 -36.94119 -34.28170 -33.84920 -32.09714 -31.30795 -30.61051 -30.31322 -26.77863 -26.30143 -24.44511 -23.94321 -22.90120 -21.10308 -20.75803 -19.37964 -18.57546 -17.95120 -17.70275 -17.48981 -16.51167 -16.26362 -16.15408 -15.89656 -15.58231 -15.43880 -15.10992 -14.88229 -14.59927 -14.55063 -14.51270 -13.98468 -13.88269 -13.52152 -13.29518 -13.09396 -12.83075 -12.69580 -12.60078 -12.23813 -12.14489 -11.83012 -11.75018 -11.63179 -11.46391 -11.10454 -11.05193 -10.37700 -10.26837 -10.08984 -9.72704 -9.56723 -9.11409 -8.89408 -8.56802 -8.18638 -8.01351 -6.46581 -3.87458 0.21999 0.59640 2.47689 2.96067 3.13145 3.24386 3.29661 3.31403 3.76310 3.78906 3.84370 3.99719 4.12991 4.23603 4.33904 4.59656 4.67520 4.73496 4.92193 5.05973 5.14240 5.15847 5.21994 5.39677 5.42808 5.48321 5.55704 5.61007 5.63006 5.65258 5.69713 5.81731 5.93172 5.99171 6.19766 6.31078 6.35840 7.06250 7.42636 7.51037 7.51703 8.01300 8.08308 8.55570 9.13224 9.48818 9.99743 10.71076 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010376 B = 0.002796 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.758114 B =10010.371406 C =12173.458593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.085 0.915 4 C 0.134 3.866 5 N -0.703 5.703 6 C 0.556 3.444 7 O -0.531 6.531 8 C -0.141 4.141 9 C -0.089 4.089 10 C 0.086 3.914 11 F -0.128 7.128 12 C -0.101 4.101 13 C -0.137 4.137 14 C 0.147 3.853 15 F -0.111 7.111 16 N -0.665 5.665 17 C 0.049 3.951 18 C 0.438 3.562 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.409 0.591 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.354 0.646 39 H 0.046 0.954 40 H 0.085 0.915 41 H 0.392 0.608 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 0.378 19.148 19.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.010 3.990 5 N -0.354 5.354 6 C 0.342 3.658 7 O -0.408 6.408 8 C -0.145 4.145 9 C -0.109 4.109 10 C 0.066 3.934 11 F -0.107 7.107 12 C -0.120 4.120 13 C -0.156 4.156 14 C 0.126 3.874 15 F -0.089 7.089 16 N -0.298 5.298 17 C -0.084 4.084 18 C 0.224 3.776 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.246 0.754 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.314 -0.532 19.852 20.557 hybrid contribution -0.545 0.557 -1.629 1.806 sum 4.769 0.025 18.223 18.836 Atomic orbital electron populations 1.22426 0.96054 1.02815 1.02694 1.21865 0.93554 0.98327 0.90655 0.89680 1.21392 0.79394 1.01278 0.96928 1.45691 1.08090 1.58707 1.22958 1.17824 0.86031 0.78891 0.83070 1.90836 1.69278 1.47553 1.33175 1.19918 0.94572 1.04191 0.95836 1.21314 0.92821 0.98740 0.97982 1.17499 0.89829 0.99657 0.86367 1.91581 1.79796 1.84953 1.54322 1.21198 1.01571 0.96964 0.92269 1.20990 0.91809 1.02592 1.00177 1.17674 0.89796 0.95319 0.84565 1.91613 1.80573 1.83988 1.52744 1.60189 1.57755 1.09266 1.02584 1.21729 1.00132 0.95605 0.90903 1.19795 0.85364 0.88261 0.84197 1.90540 1.55313 1.16222 1.84593 1.41872 1.57635 1.12458 1.07950 1.19747 1.39943 0.96464 0.86737 0.87860 1.25262 0.97588 0.95766 0.99277 1.69614 1.48629 1.08855 1.27140 0.85810 0.78277 0.79671 0.80664 1.19189 1.20763 1.20691 0.91847 0.91908 0.91791 0.91173 0.91024 0.75351 0.82897 0.83165 0.82989 0.82526 0.93610 0.89645 0.77489 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 9.16 37.16 0.34 -1.29 16 2 C 0.07 0.69 2.75 -67.72 -0.19 0.50 16 3 H 0.09 0.81 7.80 -51.93 -0.40 0.40 16 4 C 0.13 1.48 5.37 -4.04 -0.02 1.45 16 5 N -0.70 -8.37 5.34 -61.30 -0.33 -8.69 16 6 C 0.56 7.60 7.77 -12.39 -0.10 7.50 16 7 O -0.53 -8.88 15.34 5.31 0.08 -8.80 16 8 C -0.14 -1.66 5.88 -104.92 -0.62 -2.28 16 9 C -0.09 -0.93 9.51 -39.12 -0.37 -1.31 16 10 C 0.09 0.85 7.29 -39.49 -0.29 0.57 16 11 F -0.13 -1.45 17.26 2.25 0.04 -1.41 16 12 C -0.10 -0.78 10.01 -39.45 -0.40 -1.17 16 13 C -0.14 -1.09 10.01 -39.57 -0.40 -1.49 16 14 C 0.15 1.64 7.28 -38.97 -0.28 1.36 16 15 F -0.11 -1.47 15.55 2.25 0.04 -1.43 16 16 N -0.67 -9.20 5.31 -107.99 -0.57 -9.77 16 17 C 0.05 0.76 5.97 -4.97 -0.03 0.73 16 18 C 0.44 9.70 7.82 -10.98 -0.09 9.62 16 19 O -0.58 -15.06 15.78 5.55 0.09 -14.97 16 20 N -0.56 -13.65 5.29 -10.96 -0.06 -13.71 16 21 C -0.30 -8.13 9.68 -14.94 -0.14 -8.28 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -23.98 13.05 55.50 0.72 -23.25 16 25 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 26 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.41 4.61 6.17 -40.82 -0.25 4.35 16 35 H 0.15 1.49 6.41 -52.48 -0.34 1.16 16 36 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 37 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.35 5.35 8.17 -39.29 -0.32 5.03 16 39 H 0.05 0.65 7.44 -51.93 -0.39 0.26 16 40 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 41 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 42 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 371.32 15.07 5.60 5.60 Total: -1.00 -32.82 371.32 -6.97 -39.79 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -4.87 Total: 14.55 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -2.67 Total: 6.43 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.23 Total: -55.42 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.17 Total: -23.77 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.07 Total: -2.84 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.82 -6.97 -39.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690584051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.980 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds