Wall clock time and date at job start Sat Apr 11 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47150 * 2 1 4 4 C 1.52995 * 109.47094 * 120.00592 * 2 1 3 5 5 N 1.46501 * 109.47069 * 175.00015 * 4 2 1 6 6 C 1.34780 * 120.00108 * 179.97438 * 5 4 2 7 7 O 1.21568 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.47698 * 119.99868 * 179.97438 * 6 5 4 9 9 C 1.39652 * 120.15803 * 0.02574 * 8 6 5 10 10 C 1.38068 * 119.85293 * 179.97438 * 9 8 6 11 11 F 1.35102 * 119.91627 * 179.97438 * 10 9 8 12 12 C 1.38657 * 120.16432 * 0.02562 * 10 9 8 13 13 C 1.38178 * 120.31589 * 359.96067 * 12 10 9 14 14 C 1.38317 * 120.14691 * 0.04138 * 13 12 10 15 15 F 1.35105 * 120.08383 * 180.25353 * 14 13 12 16 16 N 1.46900 * 109.46978 * 240.00278 * 2 1 3 17 17 C 1.46901 * 111.00066 * 85.00131 * 16 2 1 18 18 C 1.50705 * 109.47263 * 179.97438 * 17 16 2 19 19 O 1.21294 * 119.99875 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99810 * 179.97438 * 18 17 16 21 21 C 1.37090 * 119.99754 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00096 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00146 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99865 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00243 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47260 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47302 * 119.99951 * 25 23 21 28 28 H 1.48508 * 109.47244 * 240.00019 * 25 23 21 29 29 H 1.08997 * 109.46999 * 59.99783 * 1 2 3 30 30 H 1.08998 * 109.47150 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47011 * 299.99345 * 1 2 3 32 32 H 1.08995 * 109.47558 * 54.99612 * 4 2 1 33 33 H 1.09002 * 109.47244 * 294.99620 * 4 2 1 34 34 H 0.97000 * 120.00145 * 359.97438 * 5 4 2 35 35 H 1.08004 * 120.07395 * 359.95155 * 9 8 6 36 36 H 1.08001 * 119.83756 * 179.97438 * 12 10 9 37 37 H 1.07999 * 119.92979 * 180.02562 * 13 12 10 38 38 H 1.00900 * 111.00634 * 321.04539 * 16 2 1 39 39 H 1.08999 * 109.46967 * 299.99893 * 17 16 2 40 40 H 1.08998 * 109.47384 * 59.99967 * 17 16 2 41 41 H 0.97003 * 119.99736 * 0.02562 * 20 18 17 42 42 H 0.96997 * 120.00238 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8265 1.1904 6 6 4.1731 -1.4285 2.1910 7 8 3.5686 -1.8847 3.1420 8 6 5.6451 -1.5349 2.1315 9 6 6.3427 -1.0125 1.0404 10 6 7.7187 -1.1150 0.9915 11 9 8.3949 -0.6105 -0.0638 12 6 8.4082 -1.7354 2.0222 13 6 7.7249 -2.2545 3.1052 14 6 6.3464 -2.1590 3.1674 15 9 5.6800 -2.6624 4.2294 16 7 2.0196 -0.6924 -1.1995 17 6 2.0824 0.2227 -2.3469 18 6 2.5885 -0.5214 -3.5558 19 8 2.8696 -1.6981 -3.4699 20 7 2.7286 0.1209 -4.7325 21 6 3.1884 -0.5561 -5.8323 22 1 3.4380 -1.6041 -5.7560 23 6 3.3334 0.1060 -7.0453 24 7 3.0303 1.3813 -7.1380 25 14 3.9593 -0.8166 -8.5440 26 1 4.2267 -2.2309 -8.1788 27 1 2.9351 -0.7685 -9.6183 28 1 5.2131 -0.1839 -9.0269 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6054 -1.7198 1.2950 33 1 1.7517 -0.1585 2.1369 34 1 3.9824 -0.4628 0.4315 35 1 5.8071 -0.5297 0.2363 36 1 9.4845 -1.8130 1.9783 37 1 8.2682 -2.7360 3.9047 38 1 1.4496 -1.4979 -1.4102 39 1 1.0870 0.6164 -2.5525 40 1 2.7588 1.0463 -2.1182 41 1 2.5041 1.0621 -4.8010 42 1 3.1311 1.8435 -7.9848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690584051.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:02 Heat of formation + Delta-G solvation = -158.860579 kcal Electronic energy + Delta-G solvation = -28843.058460 eV Core-core repulsion = 24265.027874 eV Total energy + Delta-G solvation = -4578.030586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.00427 -49.99766 -41.17269 -40.18575 -39.28047 -38.11381 -35.97171 -35.18509 -33.28919 -32.91000 -31.66265 -31.09739 -27.96033 -27.55459 -25.73088 -25.12227 -23.70295 -22.03977 -21.68951 -21.10049 -19.91911 -19.45859 -18.54161 -18.35304 -17.79210 -17.26297 -17.14499 -17.01529 -16.61804 -16.49042 -16.41830 -16.28328 -15.84742 -15.70174 -15.41223 -15.40559 -15.07868 -14.62283 -14.39322 -14.16096 -13.77175 -13.68116 -13.65352 -13.44415 -13.40505 -13.07472 -12.96562 -12.78311 -12.58477 -12.53919 -12.38550 -12.11724 -11.91010 -11.49987 -11.14763 -10.50399 -10.32791 -10.08718 -9.99499 -9.71529 -9.35871 -8.46082 -5.94011 -0.57865 -0.16379 1.36658 1.42495 1.55866 1.59258 2.03773 2.08053 2.29406 2.41640 2.88818 2.98157 3.01524 3.21996 3.40282 3.49933 3.58706 3.82549 3.86164 3.99344 4.10585 4.31640 4.35262 4.40165 4.50154 4.61755 4.64027 4.67360 4.76038 4.81035 4.85456 4.88666 4.93316 4.99286 5.24871 5.38495 5.42498 5.58577 5.89119 6.10083 6.35163 6.43480 6.61755 7.07533 7.14724 7.59008 8.14450 8.71400 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010376 B = 0.002796 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2697.758114 B =10010.371406 C =12173.458593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.076 3.924 3 H 0.103 0.897 4 C 0.134 3.866 5 N -0.697 5.697 6 C 0.551 3.449 7 O -0.570 6.570 8 C -0.159 4.159 9 C -0.092 4.092 10 C 0.074 3.926 11 F -0.137 7.137 12 C -0.082 4.082 13 C -0.120 4.120 14 C 0.127 3.873 15 F -0.128 7.128 16 N -0.675 5.675 17 C 0.065 3.935 18 C 0.438 3.562 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.331 4.331 22 H 0.077 0.923 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.271 1.271 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.413 0.587 35 H 0.154 0.846 36 H 0.186 0.814 37 H 0.186 0.814 38 H 0.346 0.654 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.396 0.604 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.932 1.200 19.553 20.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.034 4.034 3 H 0.121 0.879 4 C 0.010 3.990 5 N -0.347 5.347 6 C 0.338 3.662 7 O -0.451 6.451 8 C -0.163 4.163 9 C -0.112 4.112 10 C 0.055 3.945 11 F -0.116 7.116 12 C -0.100 4.100 13 C -0.139 4.139 14 C 0.107 3.893 15 F -0.106 7.106 16 N -0.308 5.308 17 C -0.067 4.067 18 C 0.226 3.774 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.460 4.460 22 H 0.095 0.905 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.199 1.199 27 H -0.197 1.197 28 H -0.196 1.196 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.251 0.749 35 H 0.171 0.829 36 H 0.204 0.796 37 H 0.204 0.796 38 H 0.165 0.835 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.230 0.770 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.314 0.334 20.250 21.214 hybrid contribution -0.831 0.285 -1.696 1.910 sum 5.483 0.619 18.554 19.357 Atomic orbital electron populations 1.22376 0.94668 1.02873 1.03605 1.21878 0.94550 0.98507 0.88457 0.87929 1.21460 0.78836 1.00881 0.97812 1.45724 1.08532 1.57924 1.22557 1.18169 0.86949 0.78337 0.82723 1.90803 1.70213 1.49418 1.34628 1.19830 0.93618 1.05909 0.96981 1.21289 0.93381 0.98871 0.97650 1.17718 0.89691 1.00287 0.86847 1.91560 1.79848 1.85232 1.54946 1.21573 1.03169 0.94615 0.90676 1.21327 0.90310 1.01366 1.00851 1.18067 0.91120 0.95962 0.84169 1.91568 1.81195 1.84365 1.53488 1.60158 1.58518 1.09148 1.02956 1.21587 1.01422 0.95270 0.88415 1.20939 0.83326 0.87998 0.85187 1.90514 1.56565 1.18396 1.85467 1.41932 1.58362 1.12620 1.08193 1.19662 1.41940 0.95865 0.88582 0.90474 1.25972 0.97323 0.96576 1.01280 1.69666 1.48794 1.09599 1.28031 0.84930 0.78192 0.78089 0.77513 1.19899 1.19733 1.19643 0.91841 0.92363 0.89894 0.92534 0.89841 0.74948 0.82875 0.79644 0.79639 0.83502 0.91349 0.87219 0.76962 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 9.16 71.98 0.66 -2.16 16 2 C 0.08 1.44 2.75 44.91 0.12 1.56 16 3 H 0.10 1.64 7.80 -2.39 -0.02 1.62 16 4 C 0.13 2.86 5.37 86.38 0.46 3.33 16 5 N -0.70 -16.57 5.34 -466.12 -2.49 -19.06 16 6 C 0.55 15.44 7.77 86.74 0.67 16.11 16 7 O -0.57 -19.71 15.34 -3.93 -0.06 -19.77 16 8 C -0.16 -3.79 5.88 -20.06 -0.12 -3.90 16 9 C -0.09 -1.91 9.51 22.57 0.21 -1.70 16 10 C 0.07 1.37 7.29 22.33 0.16 1.53 16 11 F -0.14 -2.95 17.26 44.97 0.78 -2.17 16 12 C -0.08 -1.02 10.01 22.36 0.22 -0.80 16 13 C -0.12 -1.61 10.01 22.27 0.22 -1.39 16 14 C 0.13 2.78 7.28 22.67 0.17 2.94 16 15 F -0.13 -3.41 15.55 44.97 0.70 -2.71 16 16 N -0.68 -18.02 5.31 -495.58 -2.63 -20.66 16 17 C 0.07 1.93 5.97 85.56 0.51 2.44 16 18 C 0.44 19.44 7.82 87.66 0.69 20.13 16 19 O -0.62 -32.92 15.78 -3.07 -0.05 -32.97 16 20 N -0.57 -28.09 5.29 -306.98 -1.62 -29.71 16 21 C -0.33 -18.33 9.68 84.04 0.81 -17.51 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 24 N -0.92 -48.53 13.05 21.66 0.28 -48.25 16 25 Si 0.99 42.32 29.55 68.60 2.03 44.35 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 29 H 0.06 1.04 7.45 -2.39 -0.02 1.03 16 30 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.41 9.19 6.17 -92.71 -0.57 8.62 16 35 H 0.15 3.02 6.41 -2.91 -0.02 3.00 16 36 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 37 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.35 10.37 8.17 -89.69 -0.73 9.64 16 39 H 0.07 1.77 7.44 -2.39 -0.02 1.75 16 40 H 0.11 2.77 8.06 -2.39 -0.02 2.76 16 41 H 0.40 18.36 7.90 -92.71 -0.73 17.63 16 42 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -73.22 371.32 1.28 -71.94 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.92 Total: 38.59 kcal Atomic # 6 Polarization: 15.16 SS G_CDS: 5.27 Total: 20.43 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -6.46 Total: -117.68 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.11 Total: -52.74 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 1.48 Total: -4.88 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -73.22 1.28 -71.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690584051.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.920 kcal (2) G-P(sol) polarization free energy of solvation -73.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds